These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1391 fasta sequence [CCGACCGTTTCATGGGCAGTTGCTGGAATACACCACGACCCGTACACACAGTAACACACTTCTTATAGCTTTACACTAACAACCACTCTCCTCACGCTCCTCTTCCCCTTCCCCTCCACACAGACAGCAGCGCCGTTTGTAGCAGGATCTACTACCGTGCGGTTTGGTATGGCGGCCAATCAACACTAAACACCACACATCTACTAAAACACACCGGAACAATAAACAAATGTTAAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCCCCCCTCCCTCCGGTTTGCTTACCACCACTGCACCACCAGTATGAATTTGTTCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTACGTGCTGAAGATATAAACTAGCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACAAAAGCAACATCCTGGCCCTATCCGTTTTCTCATTCTTAAAACATCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTAGAGTAACTGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAAAACAAAACTACAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAA--ACACACACACACACACACACACACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAAACATTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCCAAGCACACAAAAAACAAACAAAAAACAGATTAGGTTACAAAAGAGAACAGAAACTGTCGAGCAATGCGTCGCGCGAGTACATTTTCTACTTTCACGTTCTTCACACCGCTGATGGAAGCAAACAAATGAACGGAACGCGGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGCCCGGTGGTGGATGAAAGATTAGAGTTTAGCCCTTTAGCCGAGACTCTCTGCACTGCTGCAGCAAGGAGAGCAAGTTTTCCAACATACATTTTCCCTG] [+] EMBL BM608195 [CCGACCGTTTCATGGGCAGTTGCTGGAATACACCACGACCCGTACACACAGTAACACACTTCTTATAGCTTTACACTAACAACCACTCTCCTCACGCTCCTCTTCCCCTTCCCCTCCACACAGACAGCAGCGCCGTTTGTAGCAGGATCTACTACCGTGCGGTTTGGTATGGCGGCCAATCAACACTAAACACCACACATCTACTAAAACACACCGGAACAATAAACAAATGTTAAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCCCCCCTCCCTCCGGTTTGCTTACCACCACTGCACCACCAGTATGAATTTGTTCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTACGTGCTGAAGATATAAACTAGCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACAAAAGCAACATCCTGGCCCTATCCGTTTTCTCATTCTTAAAACATCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTAGAGTAACTGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAAAACAAAACTACAACAAACTAATTACTTGCAATCCA ] [+] EMBL BM595826 [ ccgCATTCTTAAAACATCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTAGAGTAACTGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAAAACAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAA ACACACACACACACACACACACACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAG ] [+] EMBL BM628157 [ cCGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAAACACACACACACACACACACACACACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATC ATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAAACATTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCCAAGCACACAAAAAACAAACAAAAAACAGATTAGGTTACAAAAGAGAACAGAAACTGTCGAGCAATGCGTCGCGCGAGTACATTTTCTACTTTCACGTTCTTCACACCGCTGATGGAAGCAAACAAATGAACGGAACGCGGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGCCCGGTGGTGGATGAAAGATTAGAGTTTAGCCCTTTAGCCGAGACTCTCTGCACTGCTGCAGCAAGGAGAGCAAGTTTTCCAACATACATTTTCCCTG] consensusID : consensus_6273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence [GCAGAACCCACGATTNAATGTTAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCTCCCCCTCCGGTTTGCTATACCACCACTGCACCACCAGTATGAATTTGTATCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTTCGTGCTGAAGATGTAAACTAGCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACGAAAGCAACATCCTGGCCCTATCCGTTTTCTCATTCTTAAAACTTCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTTGAGTAACCGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAANACAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCCACGAAAACTCCTCAAAATACAAACGGGAAGTAAACAAAAAAATCAGAACGCAACAAATTCTACCTACACAAACCAAAGTAAACAAACACACAAACAAACAAAGGCCCTACTAAACCCTTACTAATCCCAATCGGCATAGTCGCGAACCCCGTCTGGGCACGCCACAANACGCGTACCGCANTACACGATCAAGGAACGTNACACAACGCCNACACACTGACAACTCAANAAACACCACACACCACAACACNCAAAACAATACACAAAGGTAAAAG] [+] EMBL AL692745 [GCAGAACCCACGATTNAATGTTAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCTCCCCCTCCGGTTTGCTATACCACCACTGCACCACCAGTATGAATTTGTATCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTTCGTGCTGAAGATGTAAACTAGCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACGAAAGCAACATCCTGGCCCTATCCGTTTTCTCATTCTTAAAACTTCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTTGAGTAACCGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAANACAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCCACGAAAACTCCTCAAAATACAAACGGGAAGTAAACAAAAAAATCAGAACGCAACAAATTCTACCTACACAAACCAAAGTAAACAAACACACAAACAAACAAAGGCCCTACTAAACCCTTACTAATCCCAATCGGCATAGTCGCGAACCCCGTCTGGGCACGCCACAANACGCGTACCGCANTACACGATCAAGGAACGTNACACAACGCCNACACACTGACAACTCAANAAACACCACACACCACAACACNCAAAACAATACACAAAGGTAAAAG] consensusID : consensus_6273#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGCAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAAACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAAACATTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCGAAGCACACAAAAACAAACAAAAAAACAGATTAGGTTACAACAGAAAACCAAAACTGTCGAGCAAAGCGTCGCGCGAGTACATTTTCTACTTTCACGTTCTTCAGACCGCTGATGGAAGCAAACAAATGAACGGTACGCGGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGACCGGTGTTGGATGAAAGTTTAGAGTTTAGTCCTTTAGCCGAGACTCTCTGC] [+] EMBL BM650964 [CCGCAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAAACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAAACATTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCGAAGCACACAAAAACAAACAAAAAAACAGATTAGGTTACAACAGAAAACCAAAACTGTCGAGCAAAGCGTCGCGCGAGTACATTTTCTACTTTCACGTTCTTCAGACCGCTGATGGAAGCAAACAAATGAACGGTACGCGGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGACCGGTGTTGGATGAAAGTTTAGAGTTTAGTCCTTTAGCCGAGACTCTCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6273#0 CCGACCGTTTCATGGGCAGTTGCTGGAATACACCACGACCCGTACACACAGTAACACACT 60 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 TCTTATAGCTTTACACTAACAACCACTCTCCTCACGCTCCTCTTCCCCTTCCCCTCCACA 120 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 CAGACAGCAGCGCCGTTTGTAGCAGGATCTACTACCGTGCGGTTTGGTATGGCGGCCAAT 180 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 CAACACTAAACACCACACATCTACTAAAACACACCGGAACAATAAACAAATGTTAAACTT 240 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 ACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTC 300 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 TGACAAAACACATTACCTTGTCCCCCCCCCCCTCCCTCCGGTTTGCTTACCACCACTGCA 360 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 CCACCAGTATGAATTTGTTCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTG 420 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 GGTCGTTGGCGGAGTGCTGCGCGTTACGTGCTGAAGATATAAACTAGCACCGCGCACACT 480 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 TTCGACACGCAACCACAGCTACACATCACAAAAGCAACATCCTGGCCCTATCCGTTTTCT 540 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------------------ consensus_6273#0 CATTCTTAAAACATCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTAGAG 600 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ------------------------------------------------GCAGAACCCACG 12 consensus_6273#0 TAACTGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCA 660 consensus_6273#2 ------------------------------------------------------------ consensus_6273#1 ATTNAATGTTAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACT 72 consensus_6273#0 AAATGTATAAAACAAAACTACAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAA 720 consensus_6273#2 ---------CCGCAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAA 51 consensus_6273#1 ACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCTCCCCCTCCGGTTTGCTA 132 * **** * ** * * * * ** * * * consensus_6273#0 ACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACA--AATTTACCTA 778 consensus_6273#2 ACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACA--AATTTACCTA 109 consensus_6273#1 TACCACCACTGCACCACCAGTATGAATTTGTATCCATAATAACGCTTCGTAACTCGTTAC 192 * ** * * * * * * * * ** * **** ** * consensus_6273#0 AAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATT 838 consensus_6273#2 AAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATT 169 consensus_6273#1 CAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTTCGTGCTGAAGATGTAAACTA 252 * * ** * * * * * ** * * * consensus_6273#0 GT--CGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAAC 896 consensus_6273#2 GT--CGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAAC 227 consensus_6273#1 GCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACGAAAGCAACATCCTGGC 312 * **** ** * ** ** * * ** ** * ** * *** ** * * * consensus_6273#0 TGAAATCAAAAACACACACACACACACACACAC---ACACACACACACACACAAACTACA 953 consensus_6273#2 TGAAATCAAAAACACA-------------------------CACACACACACAAACTACA 262 consensus_6273#1 CCTATCCGTTTTCTCATTCTTAAAACTTCTTTCCTTAGACCAAAACCAACGCAAACTAGC 372 * * * ** * ** ** ******* consensus_6273#0 CAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAA 1013 consensus_6273#2 CAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAA 322 consensus_6273#1 AAAAGGTACTTGAGTAACCGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAG 432 *** ** * ** * * *** **** * * * consensus_6273#0 ATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAA 1073 consensus_6273#2 ATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAA 382 consensus_6273#1 GTATAATT-----TCTGCAAAATGTATAANACAAAACTAAAACAAACTAATTACTTGCAA 487 ** ** ** * ***** * ****** ** *** * * * ** consensus_6273#0 ACA--TTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCCAAGCACACAAAAAACAAAC 1131 consensus_6273#2 ACA--TTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCGAAGCACACAAAAACAAACA 440 consensus_6273#1 TCCATTCTAAAGCCACGAAAACTCCTCAAAATACAAACGGGAAGTAAACAAAAA--AATC 545 * * ** * * * * * *** * ** * *** * ******* ** consensus_6273#0 AAAAAACAGATTAGGTTACAAAAGAGAACAGAAACTGTCGAGCAATGCGTCGCGCGAGTA 1191 consensus_6273#2 AAAAAACAGATTAGGTTACAACAGAAAACCAAAACTGTCGAGCAAAGCGTCGCGCGAGTA 500 consensus_6273#1 AGAACGCAACAAATTCTACCTACACAAACCAAAGTAAACAAACACACAAACAAACAAAGG 605 * ** ** * *** *** ** * * ** * * * consensus_6273#0 CATT-TTCTACTTTCACGTTCTTCACACCGCTGATGGAAGCAAACAAATGAACGGAACGC 1250 consensus_6273#2 CATT-TTCTACTTTCACGTTCTTCAGACCGCTGATGGAAGCAAACAAATGAACGGTACGC 559 consensus_6273#1 CCCTACTAAACCCTTACTAATCCCAATCGGC--ATAGTCGCGAACCCCGTCTGGGCACGC 663 * * * ** * ** ** * ** ** * ** *** ** **** consensus_6273#0 GGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGCCCGGTGGTGGA-TGAA 1309 consensus_6273#2 GGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGACCGGTGTTGGA-TGAA 618 consensus_6273#1 CACAANACG-CGTACCGCANTACACGATCAAGGAACGTNACACAACGCCNACACACTGAC 722 ** ** ** *** * ** * *** consensus_6273#0 AGATTAGAGTTTAGCCCTTTAGCCGAGACTCTCTGCACTGCTGCAGCAAGGAGAGCAAGT 1369 consensus_6273#2 AGTTTAGAGTTTAGTCCTTTAGCCGAGACTCTCTGC------------------------ 654 consensus_6273#1 AACTCAANAAACACCACACACCACAACACNCAAAACAATACACAAAGGTAAAAG------ 776 * * * * * * * ** * * consensus_6273#0 TTTCCAACATACATTTTCCCTG 1391 consensus_6273#2 ---------------------- consensus_6273#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||