These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1139 fasta sequence [ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGTGTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGCTTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCAACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTGTACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGTTTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGA--ACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA] [+] EMBL BX621631 [ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGTGTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGCTTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCAACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTGTACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGTTTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGA ACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGAACGGGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACC ACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGNTTTATTGCATTTCTTCACCCAACCCTGT ] [+] EMBL BX625697 [ AGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAAAAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA] [+] EMBL BX617226 [ GCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAAT ] consensusID : consensus_6284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence [ATCGCCCCAGGGTTTAGGAATCACTAATACAATATTTATTATGTGGTCTATGAATGTGATCTACTATATTTAAAAAAAATGAGAAGAAAAAAAACAGAGAAAAAGTAACAGCAAAACAAAACCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAG-AAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACA--CACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGATCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAG] [+] EMBL AL932590 [ATCGCCCCAGGGTTTAGGAATCACTAATACAATATTTATTATGTGGTCTATGAATGTGATCTACTATATTTAAAAAAAATGAGAAGAAAAAAAACAGAGAAAAAGTAACAGCAAAACAAAACCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAG AAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACA CACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGC ] [+] EMBL BX615097 [ CCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACACGCACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCA AAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGATCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6284#0 ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGT 60 consensus_6284#1 ------------------------------------------------------------ consensus_6284#0 GTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGC 120 consensus_6284#1 ------------------------------------------------------------ consensus_6284#0 TTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCA 180 consensus_6284#1 -----------------------------ATCGCCCCAGGGTTTAGGAATCACTAATACA 31 * *** ** ** ** * * * ** consensus_6284#0 ACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTG 240 consensus_6284#1 ATATTTATTATGTGGTCT-ATGAATGTGATCTACTATAT-------TTAAAAAAAATGAG 83 * * **** * * * ** * * * * * * * * * consensus_6284#0 TACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGT 300 consensus_6284#1 AAGAAAAAAAACAG--AGAAAAAGTAACAG----------CAAA--ACAAAACCTAGTAC 129 * * *** *** ** * * * ** *** * * ** consensus_6284#0 TTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAG 360 consensus_6284#1 TAAA------CTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAG 183 * * *** * ***************************************** consensus_6284#0 CGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAA 420 consensus_6284#1 CGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAA 243 ************************************************************ consensus_6284#0 TAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAG 480 consensus_6284#1 TAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAG 303 ************************************************************ consensus_6284#0 TTAAGTGGTAAGAACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGG 540 consensus_6284#1 TTAAGTGGTAAGAACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGG 363 ************************************************************ consensus_6284#0 CATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCAC 600 consensus_6284#1 CATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCAC 423 ************************************************************ consensus_6284#0 AACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAA 660 consensus_6284#1 AACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGATCGAGAAA 483 *********************************************** **** ******* consensus_6284#0 CCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTA 720 consensus_6284#1 CCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTA 543 ************************************************************ consensus_6284#0 CTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTT 780 consensus_6284#1 CTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTT 603 ************************************************************ consensus_6284#0 CACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATG 840 consensus_6284#1 CACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATG 663 ************************************************************ consensus_6284#0 TTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAAC 900 consensus_6284#1 TTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAAC 723 ************************************************************ consensus_6284#0 GCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACG 960 consensus_6284#1 GCAAGCAAAACAATAGCAAAAGAAAAG--------------------------------- 750 *************************** consensus_6284#0 CGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAA 1020 consensus_6284#1 ------------------------------------------------------------ consensus_6284#0 ACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATG 1080 consensus_6284#1 ------------------------------------------------------------ consensus_6284#0 ATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA 1139 consensus_6284#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||