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Anopheles gambiae
cluster # 6284 cluster # 6284       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6284#0 length = 1139 sequences # 3  
consensus_6284#1 length = 750 sequences # 2  

consensusID : consensus_6284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1139
fasta sequence
                              [ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGTGTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGCTTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCAACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTGTACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGTTTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGA--ACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA]

[+] EMBL BX621631             [ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGTGTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGCTTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCAACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTGTACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGTTTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGA  ACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGAACGGGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACC   ACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGNTTTATTGCATTTCTTCACCCAACCCTGT                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX625697             [                                                                                                                                                                                                                                                                                                                                                                                                                            AGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAAAAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA]
[+] EMBL BX617226             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAAT                                          ]


>consensus_6284#0 ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGT GTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGC TTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCA ACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTG TACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGT TTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAG CGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAA TAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAG TTAAGTGGTAAGAACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGG CATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCAC AACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAA CCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTA CTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTT CACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATG TTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAAC GCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACG CGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAA ACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATG ATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA



consensusID : consensus_6284#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 750
fasta sequence
                              [ATCGCCCCAGGGTTTAGGAATCACTAATACAATATTTATTATGTGGTCTATGAATGTGATCTACTATATTTAAAAAAAATGAGAAGAAAAAAAACAGAGAAAAAGTAACAGCAAAACAAAACCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAG-AAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACA--CACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGATCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAG]

[+] EMBL AL932590             [ATCGCCCCAGGGTTTAGGAATCACTAATACAATATTTATTATGTGGTCTATGAATGTGATCTACTATATTTAAAAAAAATGAGAAGAAAAAAAACAGAGAAAAAGTAACAGCAAAACAAAACCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAG AAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACA  CACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGC                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX615097             [                                                                                                                         CCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACACGCACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCA   AAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGATCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAG]


>consensus_6284#1 ATCGCCCCAGGGTTTAGGAATCACTAATACAATATTTATTATGTGGTCTATGAATGTGAT CTACTATATTTAAAAAAAATGAGAAGAAAAAAAACAGAGAAAAAGTAACAGCAAAACAAA ACCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATA GAGCGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAAC GAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGA AAGTTAAGTGGTAAGAACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAA AGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAG CACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGATCGAG AAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTA CTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTT CTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAAT ATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCA AACGCAAGCAAAACAATAGCAAAAGAAAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6284#0      ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGT 60
consensus_6284#1      ------------------------------------------------------------
                                                                                  

consensus_6284#0      GTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGC 120
consensus_6284#1      ------------------------------------------------------------
                                                                                  

consensus_6284#0      TTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCA 180
consensus_6284#1      -----------------------------ATCGCCCCAGGGTTTAGGAATCACTAATACA 31
                                                   * *** **   **  ** *    *   * **

consensus_6284#0      ACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTG 240
consensus_6284#1      ATATTTATTATGTGGTCT-ATGAATGTGATCTACTATAT-------TTAAAAAAAATGAG 83
                      *     *    **** *  * *     ** *   * * *       *    * *  *  *

consensus_6284#0      TACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGT 300
consensus_6284#1      AAGAAAAAAAACAG--AGAAAAAGTAACAG----------CAAA--ACAAAACCTAGTAC 129
                       *  *  *** ***   ** * * *   **          ***        *  * **  

consensus_6284#0      TTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAG 360
consensus_6284#1      TAAA------CTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAG 183
                      * *       ***    * *****************************************

consensus_6284#0      CGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAA 420
consensus_6284#1      CGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAA 243
                      ************************************************************

consensus_6284#0      TAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAG 480
consensus_6284#1      TAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAG 303
                      ************************************************************

consensus_6284#0      TTAAGTGGTAAGAACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGG 540
consensus_6284#1      TTAAGTGGTAAGAACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGG 363
                      ************************************************************

consensus_6284#0      CATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCAC 600
consensus_6284#1      CATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCAC 423
                      ************************************************************

consensus_6284#0      AACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAA 660
consensus_6284#1      AACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGATCGAGAAA 483
                      *********************************************** **** *******

consensus_6284#0      CCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTA 720
consensus_6284#1      CCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTA 543
                      ************************************************************

consensus_6284#0      CTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTT 780
consensus_6284#1      CTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTT 603
                      ************************************************************

consensus_6284#0      CACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATG 840
consensus_6284#1      CACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATG 663
                      ************************************************************

consensus_6284#0      TTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAAC 900
consensus_6284#1      TTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAAC 723
                      ************************************************************

consensus_6284#0      GCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACG 960
consensus_6284#1      GCAAGCAAAACAATAGCAAAAGAAAAG--------------------------------- 750
                      ***************************                                 

consensus_6284#0      CGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAA 1020
consensus_6284#1      ------------------------------------------------------------
                                                                                  

consensus_6284#0      ACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATG 1080
consensus_6284#1      ------------------------------------------------------------
                                                                                  

consensus_6284#0      ATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA 1139
consensus_6284#1      -----------------------------------------------------------
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)