These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1013 fasta sequence [TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGCTGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTG--GGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA-CAAAAAAAA-AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTATAACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAATACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGTTAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGGCAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTACAACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA] [+] EMBL BX612274 [TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGCTGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTG GGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA CAAAAAAAA AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGAT ] [+] EMBL BM623677 [ ccgTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGATGGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAGAATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGA ] [+] EMBL BX613293 [ TCGCAGATTTAGTAAATGGCCTTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA CAAAAAAAA AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTATAACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAATACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGTTAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGG ] [+] EMBL BX609242 [ TTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGGCAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTACAACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA] consensusID : consensus_6286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAACTCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCGCCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCTTTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGCTGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGGATGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTATCCAAAACCCAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACACACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT] [+] EMBL BM604245 [CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAACTCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCGCCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCTTTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGCTGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGGATGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTATCCAAAACCCAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACACACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6286#0 ------------------------------------------------------------ consensus_6286#1 CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAAC 60 consensus_6286#0 ------------------------------------------------------------ consensus_6286#1 TCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCG 120 consensus_6286#0 ------------------------------------------------------------ consensus_6286#1 CCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCT 180 consensus_6286#0 -----------------------TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGC 37 consensus_6286#1 TTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGC 240 ********************* ** ** ********* consensus_6286#0 TGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTA 97 consensus_6286#1 TGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTA 300 ************ *********************************************** consensus_6286#0 CCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTGGGA 157 consensus_6286#1 CCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGG-A 359 ****************************************************** *** * consensus_6286#0 TGAAGGAAGGCAGCAGCAGAAGGCCCTCA------------CCACGTGTTGGGCGGCGGG 205 consensus_6286#1 TGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGG 419 *********** ***************** ******************* consensus_6286#0 GCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACC 265 consensus_6286#1 GCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGT--ATCCAAAACC 477 ************************************************ ********** consensus_6286#0 CAATCCAATCCCAAACAAGTATTTTAGCAAAC-AACACAGATCGCAGATTTAGTAAATGG 324 consensus_6286#1 CAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGG 537 *************** **************** *************************** consensus_6286#0 GATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACAAAAAAAAAA---------- 374 consensus_6286#1 GATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACA 597 **************************************** ********* consensus_6286#0 TACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTT-CAATCGATGTG 433 consensus_6286#1 CACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT------- 650 ************************* ********************* **** consensus_6286#0 TAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAAT 493 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 ATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCG 553 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 ACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGA 613 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 GAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTAT 673 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 AACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAAT 733 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 ACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGT 793 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 TAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGG 853 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 CGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGG 913 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 CAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTAC 973 consensus_6286#1 ------------------------------------------------------------ consensus_6286#0 AACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA 1013 consensus_6286#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||