Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6286 cluster # 6286       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6286#0 length = 1013 sequences # 4  
consensus_6286#1 length = 650 sequences # 1  

consensusID : consensus_6286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1013
fasta sequence
                              [TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGCTGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTG--GGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA-CAAAAAAAA-AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTATAACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAATACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGTTAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGGCAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTACAACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA]

[+] EMBL BX612274             [TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGCTGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTG  GGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA CAAAAAAAA AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGAT                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM623677             [                                               ccgTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGATGGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAGAATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX613293             [                                                                                                                                                                                                                                                                                                                   TCGCAGATTTAGTAAATGGCCTTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA CAAAAAAAA AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTATAACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAATACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGTTAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGG                                                                                                                          ]
[+] EMBL BX609242             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGGCAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTACAACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA]


>consensus_6286#0 TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGCTGGCCCCCGAACTTAACCTATCA CCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGT CGCTTTCTGTTGACGCTTGTTGTTGATGATGGTGGGATGAAGGAAGGCAGCAGCAGAAGG CCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAA TGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAAC ACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAA TAACAAAAAAAAAATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTT TTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCC AAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTA AAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAG AGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTT TTGAGTGATTTATAACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTA ACAAAAGAAAAATACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAA AATAGAACCTTGTTAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGAC CTTTTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGC GAAAAAAATAAGGCAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAAC AAAACAAAACTACAACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA



consensusID : consensus_6286#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence
                              [CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAACTCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCGCCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCTTTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGCTGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGGATGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTATCCAAAACCCAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACACACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT]

[+] EMBL BM604245             [CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAACTCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCGCCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCTTTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGCTGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGGATGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTATCCAAAACCCAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACACACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT]


>consensus_6286#1 CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAAC TCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCG CCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCT TTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGC TGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTA CCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGGAT GAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGGG CGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTATCCAAAACCCAA TCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGGGAT TATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACACAC ACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6286#0      ------------------------------------------------------------
consensus_6286#1      CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAAC 60
                                                                                  

consensus_6286#0      ------------------------------------------------------------
consensus_6286#1      TCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCG 120
                                                                                  

consensus_6286#0      ------------------------------------------------------------
consensus_6286#1      CCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCT 180
                                                                                  

consensus_6286#0      -----------------------TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGC 37
consensus_6286#1      TTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGC 240
                                             ********************* ** ** *********

consensus_6286#0      TGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTA 97
consensus_6286#1      TGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTA 300
                      ************ ***********************************************

consensus_6286#0      CCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTGGGA 157
consensus_6286#1      CCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGG-A 359
                      ****************************************************** *** *

consensus_6286#0      TGAAGGAAGGCAGCAGCAGAAGGCCCTCA------------CCACGTGTTGGGCGGCGGG 205
consensus_6286#1      TGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGG 419
                      *********** *****************            *******************

consensus_6286#0      GCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACC 265
consensus_6286#1      GCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGT--ATCCAAAACC 477
                      ************************************************  **********

consensus_6286#0      CAATCCAATCCCAAACAAGTATTTTAGCAAAC-AACACAGATCGCAGATTTAGTAAATGG 324
consensus_6286#1      CAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGG 537
                      *************** **************** ***************************

consensus_6286#0      GATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACAAAAAAAAAA---------- 374
consensus_6286#1      GATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACA 597
                      **************************************** *********          

consensus_6286#0      TACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTT-CAATCGATGTG 433
consensus_6286#1      CACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT------- 650
                       ************************* ********************* ****       

consensus_6286#0      TAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAAT 493
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      ATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCG 553
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      ACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGA 613
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      GAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTAT 673
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      AACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAAT 733
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      ACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGT 793
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      TAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGG 853
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      CGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGG 913
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      CAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTAC 973
consensus_6286#1      ------------------------------------------------------------
                                                                                  

consensus_6286#0      AACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA 1013
consensus_6286#1      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)