These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 950 fasta sequence [AGGCAAGAATCCGCACGATTACGTTTCGCGCTTGCTTACAACAGCTCCAGTAAGCTTATCAAACTCCCGCGCTCACTTTAGCCATCTGATTTCCAACATTGCAAACGTGTCATCAATACGCAAAACATAGTTCAATCAATTAGGACGGTGACACGTATTAGAGTGATGTATTACATACGGAATGGATCGTTTCACGACTATGAGTTAAGCATCGATTACATTACTTNTNGCTATCAACGGACGATNTGCGATATACAAAACGCCCTGCTGAAACGATGTTNAACCAAATGTCCGATCCCGGAGGCGAGCTTGAGCAGCATGTAAAAGATCCGTTATCCTGTATCAATAGGCTACACACGAGCGAAAAACGAACACGTGGGACGTACTCGGGCGCGTGCCAGTGATGCCGTCCTAGGGCTGGNTTGCCAGAGAAAAAGTAATACGNAACGGGGNATTGGTCCTACCCTATACGACGACAGAACTNGNATTCNAATAGNATAATTGGGACTACACCCAGGNCGNAACTTGGTGNGCGTACCAAGCGGTGNGGACCCCTATCCGGGCACTCCCTGGACGGGATCCGGTCAAGGCNGCGTACCAACNNCCGCTAAATTAAAACCGNTAAACCCAACACAACACCGCGGCTGGATAACCCACACTTTGACTTGGCNCCACCNTCNACATGGGCCGCCCAACAGNGGAACAGGCAACTTCCCCTTCCCTCNNGNCCACAAACGGGGCCGAAGGAGCCCCNAACAAGACNCAGGAAACCAATTNCCCAAAAAAGCGAGCTTCACGAGTAGNCCCAAANTCCACGAATATCGNGCGAGAGATNGGAAGTGAGACCCGTATTCTACCCCCAACCGACGCTAGGNAGGACCACCCCCANCGCATGGAACNTNACATTAGTNAATCCACCGANGAGACCATGGCTAAAATTCACTCCNGGA] [+] EMBL AL692714 [AGGCAAGAATCCGCACGATTACGTTTCGCGCTTGCTTACAACAGCTCCAGTAAGCTTATCAAACTCCCGCGCTCACTTTAGCCATCTGATTTCCAACATTGCAAACGTGTCATCAATACGCAAAACATAGTTCAATCAATTAGGACGGTGACACGTATTAGAGTGATGTATTACATACGGAATGGATCGTTTCACGACTATGAGTTAAGCATCGATTACATTACTTNTNGCTATCAACGGACGATNTGCGATATACAAAACGCCCTGCTGAAACGATGTTNAACCAAATGTCCGATCCCGGAGGCGAGCTTGAGCAGCATGTAAAAGATCCGTTATCCTGTATCAATAGGCTACACACGAGCGAAAAACGAACACGTGGGACGTACTCGGGCGCGTGCCAGTGATGCCGTCCTAGGGCTGGNTTGCCAGAGAAAAAGTAATACGNAACGGGGNATTGGTCCTACCCTATACGACGACAGAACTNGNATTCNAATAGNATAATTGGGACTACACCCAGGNCGNAACTTGGTGNGCGTACCAAGCGGTGNGGACCCCTATCCGGGCACTCCCTGGACGGGATCCGGTCAAGGCNGCGTACCAACNNCCGCTAAATTAAAACCGNTAAACCCAACACAACACCGCGGCTGGATAACCCACACTTTGACTTGGCNCCACCNTCNACATGGGCCGCCCAACAGNGGAACAGGCAACTTCCCCTTCCCTCNNGNCCACAAACGGGGCCGAAGGAGCCCCNAACAAGACNCAGGAAACCAATTNCCCAAAAAAGCGAGCTTCACGAGTAGNCCCAAANTCCACGAATATCGNGCGAGAGATNGGAAGTGAGACCCGTATTCTACCCCCAACCGACGCTAGGNAGGACCACCCCCANCGCATGGAACNTNACATTAGTNAATCCACCGANGAGACCATGGCTAAAATTCACTCCNGGA] consensusID : consensus_6288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 796 fasta sequence [GCAAGAATCCCCCGAGGTTTCACCAGACCACTCCGGAAGGCTTGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCGGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCA-TCTGATTTCCAACATTGCAAACGTGTCATCAATACGCA-A----AACATAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCATCGGAATGGATCGTTTCACGCTTGGTTTGCATCGATTACATTACTTTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCGTTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCGGTGCCG-TGTGCGTCTGGCTGGTGCGGCAAAGTAATCGAAGGGA-TGGGCTCCTTCCGCG-AA-GATGATT-ATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCTTACACCGTCTATAACTACAAAAAGGTGTACATGTGCTT-T-TGCCAAGGCGATCTCTGCAACGCAG-CCAACCGACTCAACGTCAGCCATCGTTGGGTGAGCCTTT-CCAGTGGCACCGTG-ATATTTTCGCTTGTA-TTTGG-AAGTTGTACTTATCTCAAATTTCACAAATGGTATTATCCACTACGTGATCGTGATATTCATCCATCTATGTGCTAATTCTTGAATGTTTATTA] [+] EMBL AL930739 [GCAAGAATCCCCCGAGGTTT A CACTCCGGAAGGCTTGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCAGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCA TCTGATTTCCAACATTGCAAACGTGTCATCAATACGCA A AACATAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCATCGGAATGGATCGTTTCACGCTTGGTTTGCATCGATTACATTAC TTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCGTTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCGGTGCCG TGTGCGTCTGGCTGGTGCGGCAAAGTAATCGAAGGGACTGGGCTCCTTCCGCG AA GATGATT ATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCGTACACCGTCTATAACTACAAAAAGGTGTACATGTGCTTATNTGCCAAGGCGATCTCTGCAACGCAGACCAACCGACTCAACGTCAGCCATCGTTGGGTGAGCCTTT CCAGTGGCACCGTG ATAT ] [+] EMBL AL695053 [ CCGAGGTTTCACCAGACCACTCCGGAAGGCTTGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCGGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCA TCTGATTTCCAACATTGCAAACGTGTCATCAATACGCA A AACATAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCATCGGAATGGATCGTTTCACGCTTGGTTTGCATCGATTACATTACTTTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCATTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCGGTGCCGCTGTGCGTCTGGCTGGTGCGGCAAAGTAATCCAAGGGA TGGGCTCCTTCCGCGCAAGGATGATTCATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCTTACACCGTCTATAACTACCAAAAGGTGTACATGTGCTT T TGCCAAGGCGATCTCTGCNACGCAG CAACCGACTCAACGTCAGCCATCGTAGGGTGAGCCTTTCCCAGTGGCACCGTGCATATTTTCGCTTGTA TTTGG AAGTTGTACTTATCTCAAATTTCACAAATGGTATTATCCACTACGTGATCGTGATATTCATCCATCTATGTGCTAATTCTTGAATGTTTATTA] [+] EMBL BM616459 [ ccgACCAGACCACTCCGGAAGGCTTGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCGGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCACTC GATTTCCAACATTGCAAACGTGTCATCAATACGCACAGTTCAACACAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCAACGGAATGGAACATTTCACGCTTGGTTTGCATCGATTATATTGCTTTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCGTTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCAGTGCCG TGTGCGTCTGGCTGGTGCGGCAAAGTAATCGAAGGGA TGGGCTCCTTCCGCG AA GATGATT ATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCTTACACCGTCTATAACTACAAAAAGGTGTACATGTGCTT T TGCCAAGGCGATCTCTGCAACGCAG CCAACCGACTCAACGTCAGCCATCGTTGGGTGAGCCTTT CCAGT ] [+] EMBL BM580587 [ ccGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCGGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCACTC GATTTCCAACATTGCAAACGTGTCATCAATACGCACAGTTCAACACAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCAACGGAATGGAACATTTCACGCTTGGTTTGCATCGATTATATTGCTTTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCGTTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCAGTGCCG TGTGCGTCTGGCTGGTGCGGCAAAGTAATCGAAGGGA TGGGCTCCTTCCGCG AA GATGATT ATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCTTACACCGTCTATAACTACAAAAAGGTGTACATGTGCTT T TGCCAAGGCGATCTCTGCAACGCAG CCAACCGACTCAACGTCAGCCATCGTTGGGTGAGCCTTT CCAGTGGCACCGTG ATATTTTCGCTTGTATTTTGGAAAGTTGTACTTATCTCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6288#0 ------------------------------------------------------------ consensus_6288#1 GCAAGAATCCCCCGAGGTTTCACCAGACCACTCCGGAAGGCTTGCGCATGCTCAGAGAGG 60 consensus_6288#0 -----------------AGGCAAGAATCCGCACGATTACGTTTCGCGCTTGCTTACAACA 43 consensus_6288#1 TCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAA-A 119 ** ** ** * * * ********************* * consensus_6288#0 GCTCCAGTAAGCTTATCAAACTCCCGCGCTCACTTTAGCCATCTGATTTCCAACATTGCA 103 consensus_6288#1 GCTCCGG-AAGCTTATCAAACTCCCGCGCTCACTTTAGCCATCTGATTTCCAACATTGCA 178 ***** * **************************************************** consensus_6288#0 AACGTGTCATCAATACGCAAAACATAGTTCAATCAATTAGGACGGTGACACGTATTAGAG 163 consensus_6288#1 AACGTGTCATCAATACGCAAAACATAGTTCAATCAATTAGGACGGTGACACGTATT-GAG 237 ******************************************************** *** consensus_6288#0 TGATGTATTACATACGGAATGGATCGTTTCACGACTATGAGTTAAGCATCGATTACATTA 223 consensus_6288#1 TGATGTTTCAT---CGGAATGGATCGTTTCACGCTT----GGTTTGCATCGATTACATTA 290 ****** * * ******************* * * * *************** consensus_6288#0 CTTNTNGCTATCAACGGACGATNTGCGATATACAAAACGCCCTGCTGAAACGATGTTNAA 283 consensus_6288#1 CTTTTG-CTATCAACGGA--GATTGCGAT-TACAAA-CGCCCTGCTGAAACGATGTTA-- 343 *** * *********** ****** ****** ******************** consensus_6288#0 CCAAATGTCCGATCCCGGAGGCGAGCTTGAGCAGCATGTAAAAGATCCGTTATCCTGTAT 343 consensus_6288#1 -CCAATGTC-GATCCCGGAG-CGAGCTTG-GCAGC-TGTAAA-GATCCGT--TCCTGT-T 394 * ****** ********** ******** ***** ****** ******* ****** * consensus_6288#0 CAATAGGCTACACACGAGCGAAAAACGAACACGTGGGACGTACTCGGGCGCGTGCCAGTG 403 consensus_6288#1 CAAT--GCTACACA-GAGCGAAAA-CGAACGTG----------------GCGTATCGGCG 434 **** ******** ********* ***** * **** * * * consensus_6288#0 ATGCCGTCCTAGGGCTGGNTTGCCAGAGAAAAAGTAATACGNAACGGGGNATTGGTCCTA 463 consensus_6288#1 GTGCCGTG-TGCGTCTGGCTGGT--GCGGCAAAGTAAT-CGAA----GGGATGGGCT--- 483 ****** * * **** * * * * ******** ** * ** ** ** consensus_6288#0 CCCTATACGACGACAGAACTNGNATTCNAATAGNATAATTGGGACTACACCCAGGNCGNA 523 consensus_6288#1 CCTTCCGCGAAGATGATTATGATATGGCTACCCAGCGAATG----TGCGTCCAGCGTGGC 539 ** * *** ** * ** * * ** * * **** * consensus_6288#0 ACTTGGTGNGCGTACCAAGCGGTGNGGACCCCTATCCGGGCACTCCCTGGACGGGATCCG 583 consensus_6288#1 CCTTCGGACTC-----------TGAGGATCGTTGTGCTTACACCGTCTAT-----AACTA 583 *** * * ** *** * * * * *** ** * * consensus_6288#0 GTCAAGGCNGCGTACCAACNNCCGCTAAATTAAAACCGNTAAACCCAACACAACACCGCG 643 consensus_6288#1 CAAAAAGGTGTACATGTGCTTTTGCCAAGGCGATCTCTGCAA-CGCAGCCAACCGACTCA 642 ** * * * * ** ** * * ** * ** * * * * * consensus_6288#0 GCTGGATAACCCACACTTTGACTTGGCNCCACCNTCNACATGGGCCGCCCAACAGNGGAA 703 consensus_6288#1 AC---GTCAGCCAT-CGTTGGGTGAGCCTTTCCAGTGGCACCGTGATATTTTCGCTTGTA 698 * * * *** * *** * ** ** ** * * * * consensus_6288#0 CAGGCAACTTCCCCTTCCCTCNNGNC-CACAAACGGGGCCGAAGGAGCCCCNAACAAGAC 762 consensus_6288#1 TTTGGAAGTTGTACTTATCTCAAATTTCACAAATGGTATT------ATCCACTACGTGA- 751 * ** ** *** *** ****** ** ** ** ** consensus_6288#0 NCAGGAAACCAATTNCCCAAAAAAGCGAGCTTCACGAGTAGNCCCAAANTCCACGAATAT 822 consensus_6288#1 TCGTGATATTCATCCATCTATGTGCTAA--TTCTTGAATGTTTATTA------------- 796 * ** * ** * * * *** ** * * consensus_6288#0 CGNGCGAGAGATNGGAAGTGAGACCCGTATTCTACCCCCAACCGACGCTAGGNAGGACCA 882 consensus_6288#1 ------------------------------------------------------------ consensus_6288#0 CCCCCANCGCATGGAACNTNACATTAGTNAATCCACCGANGAGACCATGGCTAAAATTCA 942 consensus_6288#1 ------------------------------------------------------------ consensus_6288#0 CTCCNGGA 950 consensus_6288#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||