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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[CCGGTCATTTTGGACTATGCAAAACCATGCACGCCATAAAACAACGGTATTTTATACCGCATTTAGAGCGAAAAGTGAAACTGATTCTCAACAGCTGTGTGAAGTGTATCATCCACAATAAGAAGTTAGGACGAAAGGAAGGGTTCCTGCACCCCATTGACAAGGGAGATCAGCCACTGCAAACCCTTCACCTCGATCATGTAGGGCCGATGGACGCCACGGGAAAGCAGTACAAATACGTTTTGACTGTAGTGGATGGTTTTTCCAAGTTCGTCTGGTTGTACCCGACAAAAACGACTGGAGCGGAGGAAACGTTGAGGAAGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCTCAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCGTTTGTACAACAGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATGTTATCGGTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCCTTCTGTGCAGCGAGCGATTAACTCTCATATTCACGTAGCAGCTGGAAAGTCGCCATTCGAGTTGATGTTCGGGACAAAGATGAGGACGTCGGAGGTGGAAGACTTGTCGCGGTTACTGGAGGAGG]
[+] EMBL BM579723 [CCGGTCATTTTGGACTATGCAAAACCATGCACGCCATAAAACAACGGTATTTTATACCGCATTTAGAGCGAAAAGTGAAACTGATTCTCAACAGCTGTGTGAAGTGTATCATCCACAATAAGAAGTTAGGACGAAAGGAAGGGTTCCTGCACCCCATTGACAAGGGAGATCAGCCACTGCAAACCCTTCACCTCGATCATGTAGGGCCGATGGACGCCACGGGAAAGCAGTACAAATACGTTTTGACTGTAGTGGATGGTTTTTCCAAGTTCGTCTGGTTGTACCCGACAAAAACGACTGGAGCGGAGGAAACGTTGAGGAAGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCTCAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCGTTTGTACAACAGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATGTTATCGGTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCCTTCTGTGCAGCGAGCGATTAACTCTCATATTCACGTAGCAGCTGGAAAGTCGCCATTCGAGTTGATGTTCGGGACAAAGATGAGGACGTCGGAGGTGGAAGACTTGTCGCGGTTACTGGAGGAGG]
consensusID : consensus_629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCGGACGTTGAATACGAAATCGGTTTGCTGGTGGTCTCTCCAAATTCGATGAAGGTTCCAATGCTGGTAGGCATGAATTTTCTTCGAAGTGTTTGTTACGCTATAACCAACGATGGAGTGCAGATTTTTAAGAAAAAAAGTGACAACGAGGAATCGGGTAGCGATCACGAAAGTGCTGTGTATAAGATTGATTGTGAACAAATCCAAGAACTGGAAGTGCCGGGTAAGTTTCGAGACAAGGTACAAGCGCTGAAAAGTCAATACGAAGCTTCAGTGGTGGATAATTACGAAGACAATTGTCCCATACAAATGAAGATAGTGTTGGAAGAAAACGCGTCACCTTTTCGGCATACGCCCCGTCGCTTGCCTTTAATGGAGGAAGAAGCAGTCGAAAACCATGTAGGGGAATGGTTGAGGAAGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCTCAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCGTTTGTACAACAGGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATGTTATCGGTTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCCTTCTGTGCAG]
[+] EMBL BM654773 [CCGGACGTTGAATACGAAATCGGTTTGCTGGTGGTCTCTCCAAATTCGATGAAGGTTCCAATGCTGGTAGGCATGAATTTTCTTCGAAGTGTTTGTTACGCTATAACCAACGATGGAGTGCAGATTTTTAAGAAAAAAAGTGACAACGAGGAATCGGGTAGCGATCACGAAAGTGCTGTGTATAAGATTGATTGTGAACAAATCCAAGAACTGGAAGTGCCGGGTAAGTTTCGAGACAAGGTACAAGCGCTGAAAAGTCAATACGAAGCTTCAGTGGTGGATAATTACGAAGACAATTGTCCCATACAAATGAAGATAGTGTTGGAAGAAAACGCGTCACCTTTTCGGCATACGCCCCGTCGCTTGCCTTTAATGGAGGAAGAAGCAGTCGAAAACCATGTAGGGGAATGGTTGAGGAAGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCTCAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCGTTTGTACAACAGGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATGTTATCGGTTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCCTTCTGTGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_629#0 ------------------------------------------------------------
consensus_629#1 CCGGACGTTGAATACGAAATCGGTTTGCTGGTGGTCTCTCCAAATTCGATGAAGGTTCCA 60
consensus_629#0 ---CCGGTCATTTTGGACTAT----GCAAAACCATGCACGCCATAAAACAACGGTATTTT 53
consensus_629#1 ATGCTGGTAGGCATGAATTTTCTTCGAAGTGTTTGTTACGCTATAAC-CAACGATGGAGT 119
* *** ** * * * * * **** **** ***** * *
consensus_629#0 ATACCGCATTTAGAGCGAAAAGTGAAACTGATT--CTCAACAGCTGTGTGAAGTGTATCA 111
consensus_629#1 GCAG-ATTTTTAAGAAAAAAAGTGACAACGAGGAATCGGGTAGCGATCACGAAAGTGCTG 178
* **** ******** * ** *** * * **
consensus_629#0 TCCACAATAAGAAGTTAGGACGAA---AGGAA---GGGTTCCTGCACCCCATTGACAAGG 165
consensus_629#1 TGTATAAGATTGATTGTGAACAAATCCAAGAACTGGAAGTGCCGGGTAAGTTTCGAGACA 238
* * ** * * * * ** ** * *** * * * * ** *
consensus_629#0 GAGATCAGCCACTGCAAACCCTTCAC-----CTCGATCATGTAGGGC--CGATGGACGCC 218
consensus_629#1 AGGTACAAGCGCTGAAAAGTCAATACGAAGCTTCAGTGGTGGATAATTACGAAGACAATT 298
* ** * *** *** * ** ** * ** * *** *
consensus_629#0 ACGGGAAAGCAGTACAAATACGTTTTGACTGTAGTGGATGGTTTTTCCAA-GTTCGTCTG 277
consensus_629#1 GTCCCATACAAATGAAGATAGTGTTGGAAGAAAACGCGTCACCTTTTCGGCATACGCCCC 358
* * * * * *** ** ** * * * *** * * ** *
consensus_629#0 GTTG--TACCC--------GACAAAAACGACTGGA------GCGGAGGAAACGTTGAGGA 321
consensus_629#1 GTCGCTTGCCTTTAATGGAGGAAGAAGCAGTCGAAAACCATGTAGGGGAATGGTTGAGGA 418
** * * ** * * ** * * * * * **** ********
consensus_629#0 AGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCT 381
consensus_629#1 AGCTGGAATGCTGGTCGACAATTTTTGGCTATCCGGCTCGTATCGTAACCGACAGGGGCT 478
************************************************************
consensus_629#0 CAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCG 441
consensus_629#1 CAGCTTTCACAGCCAACGCATTTGGTGAGTACGCTAATCGCCATGGTATACAGCACGTCG 538
************************************************************
consensus_629#0 TTTGTACAACAGG-AGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATG 500
consensus_629#1 TTTGTACAACAGGGAGTGCCGAGGGGCAACGGTCAAGCGGAGAGAGTGAACCGCACCATG 598
************* **********************************************
consensus_629#0 TTATCGGTTTT-GACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCC 559
consensus_629#1 TTATCGGTTTTTGACGAAGTTGTCATCGGAAGATCCTGGAAAGTGGTTCAAGGTGGTGCC 658
*********** ************************************************
consensus_629#0 TTCTGTGCAGCGAGCGATTAACTCTCATATTCACGTAGCAGCTGGAAAGTCGCCATTCGA 619
consensus_629#1 TTCTGTGCAG-------------------------------------------------- 668
**********
consensus_629#0 GTTGATGTTCGGGACAAAGATGAGGACGTCGGAGGTGGAAGACTTGTCGCGGTTACTGGA 679
consensus_629#1 ------------------------------------------------------------
consensus_629#0 GGAGG 684
consensus_629#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||