These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1081 fasta sequence [GCAGAGTAGCCGCTGTTATTTGTCCCGGGCGAGCCGGGAGCCGACATCAGCAGCTCCTCGTTCATAGGCGAACACTCACGCGAATTGTCAGTGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGGTGGCTTATCGCTCTCCAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTTGTTGTTGGTGGTGCCGGTTACGCTGGCCGGGGTGTGCTGATGATGGTGATTGCTGCTGCTGTACTGGGCAAACTCGTGCACGTTCTGCCGTGGGCTGGTGGGGCAAATGTTCGCAGCACTGATCGTCCCGGTAGGGGACGGGTATCCGCTGCCGCCCATGCCGTGCAGCTCACCGCCCCGACAACTGCCGCCGCCTCCCCCACTGCCAGCTCCACCACCACCGCCACCGCCGCCCCGTACGGAGCCGCGAGATACATCGCCGAGCAGACCGACCGTGCCGACCGCACCACCGTGCTCGGAGGGAATTGAAATTTTGAGCGGTGCGTAAATCACACTGGAGGAGGGCGACTTTCCACCACGGTTGTGGTGATAGTGGTGCTGCTGGCCGCTGCCAGCTAGCCCGACGCCGCCGCTACTGTTGCCACTGGCGCCGCCGACGCCGCCGCCGCCCTGCGACATGCCGCCGCTCATCGATGCACCGCTGATGGAGCCAGCGTGCAGCGGGATGCCACCGACCGGACCGGTACCGATCTTGACCGGCGTGTGCTCGTTCAGGTCCACCAATTATACCGTTGTTG] [-] EMBL BX611268 [GCAGAGTAGCCGCTGTTATTTGTCCCGGGCGAGCCGGGAGCCGACATCAGCAGCTCCTCGTTCATAGGCGAACACTCACGCGAATTGTCAGTGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGGTGGCTTATCGCTCTCCAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTTGTTGTTGGTGGTGCCGGTTACGCTGGCCGGGGTGTGCTGATGATGGTGATTGCTGCTGCTGTACTGGGCAAACTCGTGCACGTTCTGCCGTGGGCTGGTGGGGCAAATGTTCGCAGCAC ] [+] EMBL AGA282756 [ GAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGGTGGCTTATCGCTCTCCAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTTGTTGTTGGT ] [+] EMBL BM595551 [ ccggcCTCTCCAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTTGTTGTTGGTGGTGCCGGTTACGCTGGCCGGGGTGTGCTGATGATGGTGATTGCTGCTGCTGTACTGGGCAAACTCGTGCACGTTCTGCCGTGGGCTGGTGGGGCAACTGTTCGCAGCACTGATCGTCCCGGTAGGGGACGGGTATCCGCTGCCGCCCATGCCGTGCAGCTCACCGCCCCGACAACTGCCGCCGCCTCCCCCACTGCCAGCTCCACCACCACCGCCACCGCCGCCCCGTACGGAGCCGCGAGATACATCGCCGAGCAGACCGACCGTGCCGACCGCACCACCGTGCTCGGAGGGAATTGAAATTTTGAGCGGTGCGTAAATCACACTGGAGGAGGGCGACTTTCCACCACGGTTGTGGTGATAGTGGTGCTGCTGGCCGCTGCCAGCTAGCCCGACGCCGCCGCTACTGTTGCCACTGGCGCCGCCGACGCCGCCGCCGCCCTGCGACATGCCGCCGCTCATCGATGCACCGCTGATGGAGCCAGCGTGCAGCGGGATGCCACCGACCGGACCGGTACCGATCTTGACCGGCGTGTGCTCGTTCAGGTCCACCAATTATACCGTTGTTG] consensusID : consensus_6296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TATCCACACAGAGAGCCCTTGCGTCGGCGGAGGATACCAGAGCAAGTTAACATCTTTGGGCGCTTGTTGCCCGGCTCGTAGTCGTCGCTTTCCGTATTCGAGCTGCTCGTCCTCCTCGTACACTTCGGCCTGCTGGTGTTCCGCACTCGCGTACCCGGTGTACTGGTTCTGGTACGAAGACTGCTGAGAGCCGTCGTGTTGTTGCCAGAGTAGCCGCTGTTATTTGGTCCGGGCGAGCCGGGAGCCGACATCAGCAGCTCCTCGTTCATAGGCGAACACTCACGCGAATTGTCAGTGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGATAGTAGGATAGTTTCGTTCGAGATGAAGGAATAGATCTNACCTCTGCGAT] [-] EMBL AL696345 [TATCCACACAGAGAGCCCTTGCGTCGGCGGAGGATACCAGAGCAAGTTAACATCTTTGGGCGCTTGTTGCCCGGCTCGTAGTCGTCGCTTTCCGTATTCGAGCTGCTCGTCCTCCTCGTACACTTCGGCCTGCTGGTGTTCCGCACTCGCGTACCCGGTGTACTGGTTCTGGTACGAAGACTGCTGAGAGCCGTCGTGTTGTTGCCAGAGTAGCCGCTGTTATTTGGTCCGGGCGAGCCGGGAGCCGACATCAGCAGCTCCTCGTTCATAGGCGAACACTCACGCGAATTGTCAGTGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGATAGTAGGATAGTTTCGTTCGAGATGAAGGAATAGATCTNACCTCTGCGAT] consensusID : consensus_6296#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [CCGCTGCTTATCTTGGTCCGGNCGACCCGGGACGCCGACATCAGCAGCTCCTCGTTCATAGCNCGAACACTCACGCGAATTGTCACGTGTANCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTCGCGAACCACGCTGGCGTCGCTTCCGGTACGCTCTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGTANCGACCTCGTGNCGATTCTGCCTC] [-] EMBL BX469466 [CCGCTGCTTATCTTGGTCCGGNCGACCCGGGACGCCGACATCAGCAGCTCCTCGTTCATAGCNCGAACACTCACGCGAATTGTCACGTGTANCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTCGCGAACCACGCTGGCGTCGCTTCCGGTACGCTCTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGTANCGACCTCGTGNCGATTCTGCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6296#0 ------------------------------------------------------------ consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 TATCCACACAGAGAGCCCTTGCGTCGGCGGAGGATACCAGAGCAAGTTAACATCTTTGGG 60 consensus_6296#0 ------------------------------------------------------------ consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 CGCTTGTTGCCCGGCTCGTAGTCGTCGCTTTCCGTATTCGAGCTGCTCGTCCTCCTCGTA 120 consensus_6296#0 ------------------------------------------------------------ consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 CACTTCGGCCTGCTGGTGTTCCGCACTCGCGTACCCGGTGTACTGGTTCTGGTACGAAGA 180 consensus_6296#0 ------------------------GCAGAGTAGCCGCTG-TTAT-TTGTCCCGGGCGAGC 34 consensus_6296#2 ---------------------------------CCGCTGCTTATCTTGGTCCGGNCGACC 27 consensus_6296#1 CTGCTGAGAGCCGTCGTGTTGTTGCCAGAGTAGCCGCTG-TTAT-TTGGTCCGGGCGAGC 238 ****** **** *** **** *** * consensus_6296#0 CGGGA-GCCGACATCAGCAGCTCCTCGTTCATAG-GCGAACACTCACGCGAATTGTCA-G 91 consensus_6296#2 CGGGACGCCGACATCAGCAGCTCCTCGTTCATAGCNCGAACACTCACGCGAATTGTCACG 87 consensus_6296#1 CGGGA-GCCGACATCAGCAGCTCCTCGTTCATAG-GCGAACACTCACGCGAATTGTCA-G 295 ***** **************************** ********************** * consensus_6296#0 TGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATT-GC 150 consensus_6296#2 TGTANCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTCGC 147 consensus_6296#1 TGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATT-GC 354 **** **************************************************** ** consensus_6296#0 GAACCACGCTGGCGTCGCTTCCGGTA-GCT-TTGATCGATCAGCTTCAGCTCGCTGGACG 208 consensus_6296#2 GAACCACGCTGGCGTCGCTTCCGGTACGCTCTTGATCGATCAGCTTCAGCTCGCTGGACG 207 consensus_6296#1 GAACCACGCTGGCGTCGCTTCCGGTA-GCT-TTGATCGATCAGCTTCAGCTCGCTGGACG 412 ************************** *** ***************************** consensus_6296#0 GATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACC-TTGATG 267 consensus_6296#2 GATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCCTTGATG 267 consensus_6296#1 GATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACC-TTGATG 471 ***************************************************** ****** consensus_6296#0 AAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCG 327 consensus_6296#2 AAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCG 327 consensus_6296#1 AAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCG 531 ************************************************************ consensus_6296#0 GTCCGG-TAGTAGGGATAGTTC--TTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGC 384 consensus_6296#2 GTCCGG-TAGTAGGGATAGTTC--TTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGC 384 consensus_6296#1 GTCCGGATAGTAGG-ATAGTTTCGTTCGAGATGAAGGAATAGATCTN-----ACCTCTGC 585 ****** ******* ****** ********************* ** ** consensus_6296#0 TGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGGTGGC 444 consensus_6296#2 TGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACG----- 439 consensus_6296#1 GAT--------------------------------------------------------- 588 consensus_6296#0 TTATCGCTCTC-CAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTT 503 consensus_6296#2 -TANCGACCTCGTGNCGATTCTGCCTC--------------------------------- 465 consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 GTTGTTGGTGGTGCCGGTTACGCTGGCCGGGGTGTGCTGATGATGGTGATTGCTGCTGCT 563 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 GTACTGGGCAAACTCGTGCACGTTCTGCCGTGGGCTGGTGGGGCAAATGTTCGCAGCACT 623 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 GATCGTCCCGGTAGGGGACGGGTATCCGCTGCCGCCCATGCCGTGCAGCTCACCGCCCCG 683 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 ACAACTGCCGCCGCCTCCCCCACTGCCAGCTCCACCACCACCGCCACCGCCGCCCCGTAC 743 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 GGAGCCGCGAGATACATCGCCGAGCAGACCGACCGTGCCGACCGCACCACCGTGCTCGGA 803 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 GGGAATTGAAATTTTGAGCGGTGCGTAAATCACACTGGAGGAGGGCGACTTTCCACCACG 863 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 GTTGTGGTGATAGTGGTGCTGCTGGCCGCTGCCAGCTAGCCCGACGCCGCCGCTACTGTT 923 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 GCCACTGGCGCCGCCGACGCCGCCGCCGCCCTGCGACATGCCGCCGCTCATCGATGCACC 983 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 GCTGATGGAGCCAGCGTGCAGCGGGATGCCACCGACCGGACCGGTACCGATCTTGACCGG 1043 consensus_6296#2 ------------------------------------------------------------ consensus_6296#1 ------------------------------------------------------------ consensus_6296#0 CGTGTGCTCGTTCAGGTCCACCAATTATACCGTTGTTG 1081 consensus_6296#2 -------------------------------------- consensus_6296#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||