These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 956 fasta sequence [GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAAGCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT-CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCACTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTGACGAACTGATACCCCGCCGGTAGGGCATCGTTCTATCACGCCGCGTCATATGGAATTTGCATGCAAAACGTCGTCTACAAAAACCGCGAAGCGAACATTACACACAGCCAAAAAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACATCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGATGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNGNCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACAGAAC] [+] EMBL BX625161 [GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAAGCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCTTTCGGCATCTCGACAGAGCCCACGAACATCCTCGGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTCGGATCGATGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCACTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTG ] [+] EMBL BX623323 [ CGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCGCTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTGACGAACTGATACCCCGCCGGTAGGGCATCGTTCTATCACGCCGCGTCATATGGAATTTGCATGCAAAACGTCGTCTACAAAAACCGCGAAGCGAACATTACACACAGCCAAAAAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACATCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGATGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNGNCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACAGAAC] [+] EMBL BX619967 [ ggnTGGGAGTCCCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCG ] consensusID : consensus_6298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [GGCCATAGTTGTCGTNTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCACCCATCCCAGCAAATACCCATATCCCCAAAAACCCACCAAAACAACAGTCGCGGGCTGCTCGTTGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTGCANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCAACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACGCAGCCCTGTTCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGACCGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAATACCGACATGACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAATANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCAACAGAAATGGTTC] [+] EMBL AL932746 [GGCCATAGTTGTCGTNTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCACCCATCCCAGCAAATACCCATATCCCCAAAAACCCACCAAAACAACAGTCGCGGGCTGCTCGTTGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTGCANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCAACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACGCAGCCCTGTTCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGACCGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAATACCGACATGACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAATANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCAACAGAAATGGTTC] consensusID : consensus_6298#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGGACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTGCCGGAGGCGGTGGCTTCGGAGGCGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGGCCATCAAGAAGCTGATCTCGAGGCTGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCCGTGCTGGGGACGTATCGGGATCTGGCCAGTGTCTTGCCTACAAATGGCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGCAATCCCATATCCCAAAAACCAGCCAAAAAGAACCAGTACGCAGGGCTGACTCAGTTGTCAAGCCGGTGCCAACTGGTGGGAGTCCCGGTTAGAAACCAAAACGGTTAGAANGCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG] [+] EMBL AL696621 [CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGGACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTGCCGGAGGCGGTGGCTTCGGAGGCGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGGCCATCAAGAAGCTGATCTCGAGGCTGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCCGTGCTGGGGACGTATCGGGATCTGGCCAGTGTCTTGCCTACAAATGGCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGCAATCCCATATCCCAAAAACCAGCCAAAAAGAACCAGTACGCAGGGCTGACTCAGTTGTCAAGCCGGTGCCAACTGGTGGGAGTCCCGGTTAGAAACCAAAACGGTTAGAANGCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6298#0 GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGG 60 consensus_6298#1 ------------------------------------------------------------ consensus_6298#2 ------------------------------------------------------------ consensus_6298#0 TAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAA 120 consensus_6298#1 ------------------------------------------------------------ consensus_6298#2 ------------------------------------------------------------ consensus_6298#0 GCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGG 180 consensus_6298#1 ----------------------------------GGCCAT--AGTTGTCGTNTCCGGTGG 24 consensus_6298#2 ---------CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGG 51 * * * *** consensus_6298#0 AC-ACGGTGGCGG----CTGGGGACGTATCGGATCTGGCCAG-GGTCTTGCCTACAATGG 234 consensus_6298#1 AC-ACGGTGGCGG----CTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGG 79 consensus_6298#2 ACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTG-CCGGAGGCGGTGGCTTCGGAGG 110 ** *** **** ** ** * ***** ** ** * ** ** ** * ** consensus_6298#0 CTACGGACACTACGCCCAGTA-AGCG--CAGTATACCTTGATCCC-CCCATCCCAGCCAA 290 consensus_6298#1 CTACGGACACTACGCCCAGTA-AGCG--CAGTATACCTTGATCCCACCCATCCCAGCAAA 136 consensus_6298#2 CGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAG 170 * * ** * * * ** * * ** ** * * * ******* * * * * * * consensus_6298#0 CTCCCATATCCC---------CAAAAACC-CACCAAAACAACCAGTCGCGGGCTGCTCGT 340 consensus_6298#1 TACCCATATCCC---------CAAAAACC-CACCAAAACAAC-AGTCGCGGGCTGCTCGT 185 consensus_6298#2 CACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGT 230 * * **** * ** * ** * ** * *** **** consensus_6298#0 TGTCAGCC-GGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCAAGT--G 397 consensus_6298#1 TGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTG 245 consensus_6298#2 GTCCAAGC--TCGCCCTCGCCCTCGCCTCGATCATTGGCCATCA---AGAAGCTGATC-T 284 ** * *** * ** * * * * * ****** * consensus_6298#0 CAAC-CTGG-GTCCTTC-GGCATCTCGACAGC-GCTCAC-GAACATCCTCAGCCAAATCA 452 consensus_6298#1 CANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCA 305 consensus_6298#2 CGAGGCTGG----CAGCGGACACCACGA-ATCGGCCCATGAGGTGGTCGTCTCCGG-TGG 338 * **** * * * ** * *** * * ** ** * ** * consensus_6298#0 CCCCATTAATCTCACC-CTCAG-TGGATCGGCGCTTGGATCGGTGTAATGCA---GAAGG 507 consensus_6298#1 ACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCA---GAAGG 362 consensus_6298#2 ACACGGTGGCCGTGCT--GGGGACGTATCGGGATCTGG-CCAGTGTCTTGCCTACAAATG 395 * * * * * * * ***** *** * **** *** ** * consensus_6298#0 AAC-CAGCC-CTGT-TCCATT---CGACCC--GCTTTCAAACCC---ACTCCTCC--ACC 554 consensus_6298#1 AACGCAGCC-CTGT-TCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGAC 420 consensus_6298#2 GCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGC-AAT 454 * * * ** * *** * ** ** * ** *** consensus_6298#0 CGCAA---CGGCCCCAGCGCAGC--AAGCACCGAACTC---GCACTCAA-T-ACCGAC-T 603 consensus_6298#1 CGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAAT-ACCGACAT 479 consensus_6298#2 CCCA----TATCCCAAAAACCAGCCAAAAA--GAACCAGT-ACGCAGGGCTGACTCAGTT 507 * ** *** * * * *** * * * ** * * consensus_6298#0 GACGAACTGATACCCCGCCGGTAGGGC-ATCGT-TCTATCACGCCGCGTC-ATATGGAAT 660 consensus_6298#1 GACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAAT 539 consensus_6298#2 GTCAAGCCGGTGCCA-ACTGGTGGGA--GTCCCGGTTAGAA-ACCAAAACGGT-TAGAAN 562 * * * * * * ** * *** ** ** ** * ** * * * *** consensus_6298#0 TTGCA-TGCAAAACGTCGTCTACAAAAACCG-CGA--AGCGAACATTACAC-ACAGCCAA 715 consensus_6298#1 ANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCA 599 consensus_6298#2 GCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG------------- 609 * *** * * *** * * *** *** * consensus_6298#0 A---AAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACA 772 consensus_6298#1 ACAGAAATGGTTC----------------------------------------------- 612 consensus_6298#2 ------------------------------------------------------------ consensus_6298#0 TCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGA 832 consensus_6298#1 ------------------------------------------------------------ consensus_6298#2 ------------------------------------------------------------ consensus_6298#0 TGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNG 892 consensus_6298#1 ------------------------------------------------------------ consensus_6298#2 ------------------------------------------------------------ consensus_6298#0 NCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACA 952 consensus_6298#1 ------------------------------------------------------------ consensus_6298#2 ------------------------------------------------------------ consensus_6298#0 GAAC 956 consensus_6298#1 ---- consensus_6298#2 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||