These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1331 fasta sequence [CCGGGACACATTAGTGCAAAGAAGAACGTATAACAGTCCAATCATGAAACAATGTCGCCAACGATGATAACCATCATACACTGCTTGGCTATCGGTATACTGATATTTTGGTGCGGAAAATGGATCATTCATCTGACTGCCATCACGTATGGGAAGATAAAACTACATAAAAAAGCATCCCAACAGCCGCGAGAAACTCCGTATCCCTCGGTGTCGATTCTGAAGCCGCTAATGGGAGTCGATCCAAATTTACAGAACAATTTGGAAACCTTTTTCCTCATGGACTATCCGGTCTACGAGCTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGTGATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGC-TCGAACGTGGGAGTAAACCCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATG-ATTTCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACGGAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACC-GAGAGGGGTTTGCAGCAGCGTTTGAGAAAATATACTTC-GGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTCCTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAACTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGA-TTTCTTTCTGGCCAAG-G-CATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATTATCCAGAATGGGGCGTTACCATTTAATAAGTTTACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATTCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGG-GCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTTACGTTGTTTTCCTCGTCTTAATGTCACTAGTAAATGTATGCAAACGAAAACAAATATTCGGTTTATAAATCACT] [+] EMBL BM608739 [CCGGGACACATTAGTGCAAAGAAGAACGTATAACAGTCCAATCATGAAACAATGTCGCCAACGATGATAACCATCATACACTGCTTGGCTATCGGTATACTGATATTTTGGTGCGGAAAATGGATCATTCATCTGACTGCCATCACGTATGGGAAGATAAAACTACATAAAAAAGCATCCCAACAGCCGCGAGAAACTCCGTATCCCTCGGTGTCGATTCTGAAGCCGCTAATGGGAGTCGATCCAAATTTACAGAACAATTTGGAAACCTTTTTCCTCATGGACTATCCGGTCTACGAGCTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGTGATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGC TCGAACGTGGGAGTAAACCCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATG ATTTCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACGGAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACCGGAGAGGGGTTTGCAGCAGCGTTTGAGAAAATATACTTCGGGCACAGTGCAGT ] [+] EMBL CNS08W0X [ TTTTTCCTCATGGACTATCCGGTCTACGAGCTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGTGATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGC TCGAACGTGGGAGTAAACCCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATG ATTTCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACGGAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACC GAGAGGGGTTTGCAGCAGCGTTTGAGAAAATATACTTC GGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTCCTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAACTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGA TTTCTTTCTGGCCAAG G CATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATTATCCAGAATGGGGCGTTACCATTTAATAAGTTTACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATTCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGG GCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTTACGTTGTTTTCCTCGTCTTAATGTCACTAGTAAATGTATGCAAACGAAAACAAATA ] [+] EMBL CNS08O4O [ TCCTCATGGACTATCCGGTCTACGAGCTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGTGATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGCATCGAACGTGGGAGTAAACCCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATGCATTTCCGATGCAGGTATCCGGATGAAGAGTGAAACATTGACCGACATGGTGAACCATATGACGGAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACC GAGAGGGGTTTGCAGCAGCGTTTGAGAAAATATACTTC GGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTCCTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAACTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGATTTTCTTTCTGGCCAAGAGACATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGAAAAAAAAGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGCCCATCCTCCTCGCGCCTATGTCAGAGTGCATCATC ] [-] EMBL CNS08W0Y [ GGCGAACTCGTGTGTATAAGCTTCCTTGGGGGGCGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTTACGTTGTTTTCCTCGTCTTAATGTCACTAGTAAATGTATGCAAACGAAAACAAATATTCGGTTTATAAATCACT] consensusID : consensus_6300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [TGGATTGACTATACTAGGCCGAAGATTTACTATTACTGGCCAAGGCATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATCATCCAGAATGGGGCGTTACCATTTAATAAGTATACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATCCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATNTGGGCTTACGTCGTTTTATTTTCTATGCTTATGTCTCTACTATTCGAACAAATTGCGTTCATAAGGANNACTTCATGAGTGAGCCATCTTTTTAAGCAAGCGCACATG] [+] EMBL BX624223 [TGGATTGACTATACTAGGCCGAAGATTTACTATTACTGGCCAAGGCATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATCATCCAGAATGGGGCGTTACCATTTAATAAGTATACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATCCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATNTGGGCTTACGTCGTTTTATTTTCTATGCTTATGTCTCTACTATTCGAACAAATTGCGTTCATAAGGANNACTTCATGAGTGAGCCATCTTTTTAAGCAAGCGCACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6300#0 CCGGGACACATTAGTGCAAAGAAGAACGTATAACAGTCCAATCATGAAACAATGTCGCCA 60 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 ACGATGATAACCATCATACACTGCTTGGCTATCGGTATACTGATATTTTGGTGCGGAAAA 120 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 TGGATCATTCATCTGACTGCCATCACGTATGGGAAGATAAAACTACATAAAAAAGCATCC 180 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 CAACAGCCGCGAGAAACTCCGTATCCCTCGGTGTCGATTCTGAAGCCGCTAATGGGAGTC 240 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 GATCCAAATTTACAGAACAATTTGGAAACCTTTTTCCTCATGGACTATCCGGTCTACGAG 300 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 CTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGT 360 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 GATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGCTCGAACGTGGGAGTAAAC 420 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 CCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATGATT 480 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 TCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACG 540 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 GAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACCGAGAGGGGTTTGCAGCA 600 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 GCGTTTGAGAAAATATACTTCGGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTC 660 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 CTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAA 720 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 CTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGATTTC---TTTCTGGCCAAG 777 consensus_6300#1 ---------------TGGATTGACTA-TACTAGGCCGAAGATTTACTATTACTGGCCAAG 44 * *** * ** ************ ** ********* consensus_6300#0 GCATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCT 837 consensus_6300#1 GCATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCT 104 ************************************************************ consensus_6300#0 GGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTG 897 consensus_6300#1 GGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTG 164 ************************************************************ consensus_6300#0 GCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATG 957 consensus_6300#1 GCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATG 224 ************************************************************ consensus_6300#0 TTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATT 1017 consensus_6300#1 TTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATT 284 ************************************************************ consensus_6300#0 CATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATTATCCAGAATGGGGCG 1077 consensus_6300#1 CATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATCATCCAGAATGGGGCG 344 ******************************************** *************** consensus_6300#0 TTACCATTTAATAAGTTTACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCC 1137 consensus_6300#1 TTACCATTTAATAAGTATACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCC 404 **************** ******************************************* consensus_6300#0 TACCTATTCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAG 1197 consensus_6300#1 TACCTATCCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAG 464 ******* **************************************************** consensus_6300#0 CTTGCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTT 1257 consensus_6300#1 CTTGCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATNTGGGCTT 524 **************************************************** ******* consensus_6300#0 ACGTTGTTTTCCTC---GTCTTAATGTCACTAGTA----AATGTATGCAAACGAAAACAA 1310 consensus_6300#1 ACGTCGTTTTATTTTCTATGCTTATGTCTCTACTATTCGAACAAATTGCGTTCATAAGGA 584 **** ***** * * * ***** *** ** ** ** * ** * consensus_6300#0 ATATTCGGTTTATAAATCACT-------------------- 1331 consensus_6300#1 NNACTTCATGAGTGAGCCATCTTTTTAAGCAAGCGCACATG 625 * * * * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||