These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 860 fasta sequence [GCCTTTTTTTTTTTTTGTTTTGTTACACGATATTGTTAAGTTTATTGTTAAAAGCGAAACATTTACATTCGACCAACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGGCGGTGGTTCAATCTTTTCCTTCAGCACGTCCTCATTCGTCTTGCCGCCCTTTCGCTCGAGCTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCGCTACCTCCCGTGCCTCAATTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCA-CCAGCGCTCGCTTGATC-ACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTT-CAAGCGGTGCTGCTTTTCGATGCCCGC-TTCCCGCT-GGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATACTGTAAGC-AATTGTGTTTCTGCTTATCCACCAATTTGTTTACGGGATTCACGAAGGCCCTTGTTTACGTTTGCTGCATATTCCAGTAGG] [+] EMBL CNS091OJ [GCCTTTTTTTTTTTTTGTTTTGTTACACGATATTGTTAAGTTTATTGTTAAAAGCGAAACATTTACATTCGACCAACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGGCGGTGGTTCAATCTTTTCCTTCAGCACGTCCTCATTCGTCTTGCCGCCCTTTCGCTCGAGCTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCGCTACCTCCCGTGCCTCAATTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCA CCAGCGCTCGCTTGATC ACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTT CAAGCGGTGCTGCTTTTCGATGCCCGC TTCCCGCT GGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCT ] [-] EMBL BM608759 [ ACACGATATTGTTAAGTTTATTGTTAAAAGCGAAACATTTACATTCGACCGACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGGCGGTGGTTCAATCTTTTCCTTCAGCACGTCCTCATTCGTCTTGCCGg ] [-] EMBL CNS091OI [ CGAGCTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCGCTACCTCCCGTGCCTCAATTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCA CCAGCGCTCGCTTGATC ACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTT CAAGCGGTGCTGCTTTTCGATGCCCGC TTCCCGCT GGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATACTGTAAGC AATTGTGTTTCTGCTTATCCACCAATTTGTTTACGGGATTCACGAAGGCCCTTGTTTACGTTTGCTGCATATTCCAGTAGG] [-] EMBL BX619324 [ tnnTGCACTTCACCCAGCGCTCGCTTGATCAACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTTCCAAGCGGTGCTGCTTTTCGATGCCCGCTTTCCCGCTGGGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATACTGTAAGCNCATTGTGTTCCTGTTTATCCACCAATTTATTTACag ] consensusID : consensus_6302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [CACGGCACGTCCCTCCATTTCCGGTCCTGTGCCGGCCCCTTTTNCGTCTCGAACCTGTTTTNCTCGGATGGAATGCCGCCGCCATTTGTTTGGCCNGTAGCTTGTCCCGGCCTACCTCCCCGGTGCCTTCAAATTTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCGCTCGCTTGATCACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATGACTGTAAGCAATTGTGTTCCTCCATCGTGCCGATTCTTGGCC] [-] EMBL BX468909 [CACGGCACGTCCCTCCATTTCCGGTCCTGTGCCGGCCCCTTTTNCGTCTCGAACCTGTTTTNCTCGGATGGAATGCCGCCGCCATTTGTTTGGCCNGTAGCTTGTCCCGGCCTACCTCCCCGGTGCCTTCAAATTTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCGCTCGCTTGATCACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATGACTGTAAGCAATTGTGTTCCTCCATCGTGCCGATTCTTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6302#0 GCCTTTTTTTTTTTTTGTTTTGTTACACGATATTGTTAAGTTTATTGTTAAAAGCGAAAC 60 consensus_6302#1 ------------------------------------------------------------ consensus_6302#0 ATTTACATTCGACCAACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGG 120 consensus_6302#1 -------------------------------------------------------CACGG 5 ** consensus_6302#0 CG-GTGGTTCAATCTTT--TCCTTCAGCACGTCCTCATTCGTCTTGCCGCCCTTTCGCTC 177 consensus_6302#1 CACGTCCCTCCATTTCCGGTCCTGTGCCGGCCCCTTTTNCGTCTCGAACCTGTTTTNCTC 65 * ** ** ** * **** * *** * ***** * * *** *** consensus_6302#0 GAGCTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCG--CTACCTCCC--GTG 233 consensus_6302#1 GGATGGAATGCCGCCGCCATTTGTTTGGCCNGTAGCTTGTCCCGGCCTACCTCCCCGGTG 125 * * * ** * * * * * *** ********* *** consensus_6302#0 CCTCAA---TTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGC 290 consensus_6302#1 CCTTCAAATTTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGC 185 *** * *************************************************** consensus_6302#0 CCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGC 350 consensus_6302#1 CCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGC 245 ************************************************************ consensus_6302#0 TGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCG 410 consensus_6302#1 TGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCG 305 ************************************************************ consensus_6302#0 CTCGCTTGATCACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGC 470 consensus_6302#1 CTCGCTTGATCACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGGTAGGC 365 *************************** ******************************** consensus_6302#0 CACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGA 530 consensus_6302#1 CACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGA 425 ************************************************************ consensus_6302#0 CTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGG 590 consensus_6302#1 CTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGG 485 ************************************************************ consensus_6302#0 CCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTT 650 consensus_6302#1 CCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTT 545 ************************************************************ consensus_6302#0 GTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCT 710 consensus_6302#1 GTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCT 605 ************************************************************ consensus_6302#0 TTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAAT 770 consensus_6302#1 TTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAAT 665 ************************************************************ consensus_6302#0 -ACTGTAAGCAATTGTGTTTCTGCTTATCCACCAATTTGTTTACGGGATTCACGAAGGCC 829 consensus_6302#1 GACTGTAAGCAATTGTGTTCCTCCAT-CGTGCCGATTCTTGGCC---------------- 708 ****************** ** * * ** *** * * consensus_6302#0 CTTGTTTACGTTTGCTGCATATTCCAGTAGG 860 consensus_6302#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||