These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1151 fasta sequence [CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGACGAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGCATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGCCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGTGGTATATTAAGCTCTGTGTATGTATGNGGGGATCA] [+] EMBL BM576316 [CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGACGAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGCATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGACGGTGCACACGTACGAGGATAACGATGTGTACACGCGGGTCGACGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGC ] [+] EMBL BM590573 [ CCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGTTTCATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAGCACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGC ] [+] EMBL BM617023 [ CCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGTTTCATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAGCACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACT ] [+] EMBL BX625222 [ GGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGTGGTATATTAAGCTCTGTGTATGTATGNGGGGATCA] consensusID : consensus_6304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CAGAATCCCCGAGGTTAACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACTCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTATGTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGATAAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCTGAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCTCCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCACTCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTCTCGCTCTTTGAAATGGCTATTT] [+] EMBL AL694455 [CAGAATCCCCGAGGTTAACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACTCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTATGTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGATAAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCTGAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCTCCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCACTCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTCTCGCTCTTTGAAATGGCTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6304#0 CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGAC 60 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 GAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGC 120 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 ATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGCCGGTACACACGTACGAGGAT 180 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 AACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTC 240 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 GACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCG 300 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 GAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGG 360 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 ATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTA 420 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 TCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGC 480 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 GTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGC 540 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 GAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACG 600 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 CGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAG 660 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 CAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATC 720 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 GACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAG 780 consensus_6304#1 ------------------------------------------------------------ consensus_6304#0 GACATCAGCAAAGGGATGGGCACGCTGCAGAAGGT--GAAAAAGACGTACATATGATTTA 838 consensus_6304#1 ---------------------------CAGAATCCCCGAGGTTAACGTACATATGATTTA 33 ***** ** **************** consensus_6304#0 CTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTG 898 consensus_6304#1 CTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTG 93 ************************************************************ consensus_6304#0 GCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCT 958 consensus_6304#1 GCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCT 153 ************************************************************ consensus_6304#0 GGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCT 1018 consensus_6304#1 GGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCT 213 ************************************************************ consensus_6304#0 CGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAA 1078 consensus_6304#1 CGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAA 273 ************************************************************ consensus_6304#0 CCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGT-GGTATATTAAGCTCTGTGTAT 1137 consensus_6304#1 C-TCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTAT 332 * ******************************* ** * ********************* consensus_6304#0 GTATGNGGGGATCA---------------------------------------------- 1151 consensus_6304#1 GTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGAT 392 ***** ******** consensus_6304#0 ------------------------------------------------------------ consensus_6304#1 AAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCT 452 consensus_6304#0 ------------------------------------------------------------ consensus_6304#1 GAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCT 512 consensus_6304#0 ------------------------------------------------------------ consensus_6304#1 CCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCAC 572 consensus_6304#0 ------------------------------------------------------------ consensus_6304#1 TCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTC 632 consensus_6304#0 ---------------------- consensus_6304#1 TCGCTCTTTGAAATGGCTATTT 654 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||