Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6304 cluster # 6304       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6304#0 length = 1151 sequences # 4  
consensus_6304#1 length = 654 sequences # 1  

consensusID : consensus_6304#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1151
fasta sequence
                              [CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGACGAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGCATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGCCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGTGGTATATTAAGCTCTGTGTATGTATGNGGGGATCA]

[+] EMBL BM576316             [CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGACGAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGCATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGACGGTGCACACGTACGAGGATAACGATGTGTACACGCGGGTCGACGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM590573             [                                                                                                                                                               CCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGTTTCATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAGCACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGC                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM617023             [                                                                                                                                                               CCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGTTTCATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAGCACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACT                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX625222             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGTGGTATATTAAGCTCTGTGTATGTATGNGGGGATCA]


>consensus_6304#0 CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGAC GAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGC ATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGCCGGTACACACGTACGAGGAT AACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTC GACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCG GAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGG ATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTA TCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGC GTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGC GAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACG CGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAG CAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATC GACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAG GACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACT GCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGC GGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGG CGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCG AGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACC TCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGTGGTATATTAAGCTCTGTGTATGTA TGNGGGGATCA



consensusID : consensus_6304#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [CAGAATCCCCGAGGTTAACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACTCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTATGTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGATAAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCTGAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCTCCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCACTCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTCTCGCTCTTTGAAATGGCTATTT]

[+] EMBL AL694455             [CAGAATCCCCGAGGTTAACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACTCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTATGTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGATAAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCTGAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCTCCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCACTCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTCTCGCTCTTTGAAATGGCTATTT]


>consensus_6304#1 CAGAATCCCCGAGGTTAACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACAC CGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTAT TAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTC TTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGT GCACTACGAAGATGGGGGTAAAGACACACAAAACTCGAGCGACGCTTCTTTTCTACTTCT TTTGGTGGTTTGGTATATTAAGCTCTGTGTATGTATGTGGGGATCATTTTAACCCAGCGC TCTCTCGGAGAAGATCCGCCACGGAAAAGGATAAGAGTAAGGTGAATCCATTCTAAGTAC ACCATGGAAAATCGAAGCACAATCGAGGCTCTGAGCCAAATTTGTTAGGGGAAAAAGCAT TTCAGGCACAAAAGCAAAAACCCTCCCGGTCTCCAAGCCATCCAGACACAGATGCCGGTC AGGTTCTCAGTAAAGGTTCCGGTTCGATTCACTCATCCCGGTGTAGCGATNTGTATGGTG AACGGAATGGAATGTTTCAAGGTACTACTCTCTCGCTCTTTGAAATGGCTATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6304#0      CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGAC 60
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      GAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGC 120
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      ATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGCCGGTACACACGTACGAGGAT 180
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      AACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTC 240
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      GACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCG 300
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      GAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGG 360
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      ATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTA 420
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      TCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGC 480
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      GTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGC 540
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      GAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACG 600
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      CGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAG 660
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      CAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATC 720
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      GACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAG 780
consensus_6304#1      ------------------------------------------------------------
                                                                                  

consensus_6304#0      GACATCAGCAAAGGGATGGGCACGCTGCAGAAGGT--GAAAAAGACGTACATATGATTTA 838
consensus_6304#1      ---------------------------CAGAATCCCCGAGGTTAACGTACATATGATTTA 33
                                                 *****     **     ****************

consensus_6304#0      CTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTG 898
consensus_6304#1      CTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTG 93
                      ************************************************************

consensus_6304#0      GCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCT 958
consensus_6304#1      GCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCT 153
                      ************************************************************

consensus_6304#0      GGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCT 1018
consensus_6304#1      GGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCT 213
                      ************************************************************

consensus_6304#0      CGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAA 1078
consensus_6304#1      CGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAA 273
                      ************************************************************

consensus_6304#0      CCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGT-GGTATATTAAGCTCTGTGTAT 1137
consensus_6304#1      C-TCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTAT 332
                      * ******************************* ** * *********************

consensus_6304#0      GTATGNGGGGATCA---------------------------------------------- 1151
consensus_6304#1      GTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGAT 392
                      ***** ********                                              

consensus_6304#0      ------------------------------------------------------------
consensus_6304#1      AAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCT 452
                                                                                  

consensus_6304#0      ------------------------------------------------------------
consensus_6304#1      GAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCT 512
                                                                                  

consensus_6304#0      ------------------------------------------------------------
consensus_6304#1      CCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCAC 572
                                                                                  

consensus_6304#0      ------------------------------------------------------------
consensus_6304#1      TCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTC 632
                                                                                  

consensus_6304#0      ----------------------
consensus_6304#1      TCGCTCTTTGAAATGGCTATTT 654
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)