cluster # 6305

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6305 cluster # 6305 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6305#0 length = 762 sequences # 4

consensus_6305#1 length = 427 sequences # 1

consensusID : consensus_6305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 762
fasta sequence

                              [TCAGTTGCAGTCGAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCATGATGATGTTCGCCCAGTGTCCGGCGTCCGTTTTTAATGTGAACGAGAACTGCAACAAGCTGCGGGAGTATGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGTGTGATTGGGGTCTTGGTTGTGAAAAACGGCAAACGTTGCATAGCTGGTGTAGCGATAGGGGAAAATGAATCATAAATTATGTGCAAACACCTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AF533512             [TCAGTTGCAGTCGAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGTTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCATGATGATGTTCGCCCAGTGTCCGGCGTCCGTTTTTAATGTGAACGAGAACTGCAACAAGCTGCGGGAGTATGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGTGTGATTGGGGTCTTGGTTGTGAAAAACGGCAAACGTTGCATAGCTGGTGTAGCGATAGGGGAAAATGAATCATAAATTATGTGCAAACACCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM587563             [      ccgGTCGAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGTCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCACGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCATGATGATGTTCGCCCAGTGTCCGGCGTCCGTTTTTAACGTGAACGAGAACTGCAACAAGCTGCGGGAGTATGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGTGTGATTGGGGTCTTGGTTGTGAAAAACGGCAAACGTTGC                                                                         ]
[+] EMBL BM654527             [        ccgCGAGTAGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCACGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCTAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGC                                                                                                                                                                                                                                         ]
[+] EMBL BM630546             [                                          TGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCTAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCT                                                                                                                                                                                                                                                 ]




>consensus_6305#0
TCAGTTGCAGTCGAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACT
GTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTG
TGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCCCATGCTGGT
GGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCT
CCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAA
CATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGT
CAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCT
GGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGG
CGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCATGATGATGTT
CGCCCAGTGTCCGGCGTCCGTTTTTAATGTGAACGAGAACTGCAACAAGCTGCGGGAGTA
TGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGTGTGATTGGGG
TCTTGGTTGTGAAAAACGGCAAACGTTGCATAGCTGGTGTAGCGATAGGGGAAAATGAAT
CATAAATTATGTGCAAACACCTAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6305#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [GCAAGAATTCGCCAGAGGTTNTAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCTGACGGTATGCTGAAGCGGGACGATCTGTCGAAGAATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAG]

[+] EMBL AL696649             [GCAAGAATTCGCCAGAGGTTNTAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCTGACGGTATGCTGAAGCGGGACGATCTGTCGAAGAATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAG]




>consensus_6305#1
GCAAGAATTCGCCAGAGGTTNTAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCA
GTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGA
TAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCGAATGTTGCCCCAAGCCC
ATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAG
AAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAAT
GCGACCAACATGTACGCTGACGGTATGCTGAAGCGGGACGATCTGTCGAAGAATGTTCAT
GGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTG
CTTCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6305#0      --------TCAGTTGCAGTCG-AGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCA 51
consensus_6305#1      GCAAGAATTCGCCAGAGGTTNTAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCA 60
                              **    *  **   **************************************

consensus_6305#0      GTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGA 111
consensus_6305#1      GTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGA 120
                      ************************************************************

consensus_6305#0      TAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCC 171
consensus_6305#1      TAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGC-GAATGTTGCCCCAAGCC 179
                      ****************************************** *****************

consensus_6305#0      CATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAA 231
consensus_6305#1      CATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAA 239
                      ************************************************************

consensus_6305#0      GAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAA 291
consensus_6305#1      GAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAA 299
                      ************************************************************

consensus_6305#0      TGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGA-TGTTCA 350
consensus_6305#1      TGCGACCAACATGTACGCTGACGGTATGCTGAAGCGGGACGATCTGTCGAAGAATGTTCA 359
                      ****************** ********************************** ******

consensus_6305#0      TGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGT 410
consensus_6305#1      TGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGT 419
                      ************************************************************

consensus_6305#0      GCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGA 470
consensus_6305#1      GCTTCGAG---------------------------------------------------- 427
                      ********                                                    

consensus_6305#0      GCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCA 530
consensus_6305#1      ------------------------------------------------------------
                                                                                  

consensus_6305#0      TGATGATGTTCGCCCAGTGTCCGGCGTCCGTTTTTAATGTGAACGAGAACTGCAACAAGC 590
consensus_6305#1      ------------------------------------------------------------
                                                                                  

consensus_6305#0      TGCGGGAGTATGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGT 650
consensus_6305#1      ------------------------------------------------------------
                                                                                  

consensus_6305#0      GTGATTGGGGTCTTGGTTGTGAAAAACGGCAAACGTTGCATAGCTGGTGTAGCGATAGGG 710
consensus_6305#1      ------------------------------------------------------------
                                                                                  

consensus_6305#0      GAAAATGAATCATAAATTATGTGCAAACACCTAAAAAAAAAAAAAAAAAAAA 762
consensus_6305#1      ----------------------------------------------------