These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1732 fasta sequence [CCGTATTTTTGTCCATACATTTTGGAAAAATGTAATCTTAATAAGTGTGTGTGTGTGAGAGAGAGGTAAAACATAGAGGGAAACAGTATAGCGAAGAGCACACCAAAACGATCGGTTCGTTAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCACCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCTCTCTGTCTCTGTTTTCTCTGCATCGAGCGTGGAGACAACGGATCTGTATGTTACCATTTCTTTTTTTTTATTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATAGGAGTGAAGGCGGAGAAGGCGGGCGAGTAAAGAGAAAGTATTTTTGAAACCATATTCCACATTACTATTTATCCGGTACAATTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAACTGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTTTTTTTATTTTTTATTTTTTATGTTAAGATATGTTTTCTTTGATTGCTTCGTAACTCGTGGAGGTGCTTTTGTGCTTCAAACCAAATCTCATTTTTGCAGTATTTTTTAGTTTATTGAGTTGCAGCTACCAGTTTTGTTTTATATTTTTGGTTTAAATTTTGGTTTTTTGGGCTTTACGGCTGGTTCTAGTTGTTGTACATCAGGACAGGACTTGAGAACAAACGCTCCCGCTCTCGCTCTCTTTCTCTCTCTATCACACACTTTTGTGTGTATTGTGAACGATTTAGTATTTTGTTTTTCAGTGTATGAGATTTTTCGGTAACAATTTGGTTAATTTTGTTTGCGCTGATATGCGATCCACACATGCGAACCTGGGTGTAGTGGCACAGACAAGAGCGGGAAGGAAAAAGCCGTAAACATACAGAGCGTGTTATAAAAACAGCAGAGGATGAAGAAAAACGCGCGCAGAAGAATTTCAGCAGGTCAATTTCTCCGCTAGGCACCGTGCAAAACCAGTTACGCCTATGATTTCCCCTCAATTAAACAACTCCTGTGTGAAAGCGGAAGGAGCGTGCAAGACACACACACACGCACACCGCGATGGAATGTTTCTTTCTTGTACATGCGTTTATATTTCGGTCCCCAGTAAAAAAAAACTCCAACCAACAACCAACAGCACACCCCCAACGTACCCGAGGATCGTTCTTGTTTCACTTG-TTTTTTTTTTTCGTTTTCCCCATTGTGCGAAATTAAGTACTGCGAAAAGAAGAAGGGCGCCTTAATGTTTAGGCAAATAGCAAAGGAGTAGGCTGAAAAGCAACCCCCCGCGCGAGGGACAACGGTTCGCATTTTCATCGGAAAAAAGGAAGCGAAAAGCACACGCAAATCCCTGGCCCTTGAAACGAAGTGTATCTGTGTTTTTTAAACGCTGAGATTGAAGAACAAGAGAAAAAAAAACACGAGAAAGACTAATAATGAGACGATGAGACGAGAAAATCAATCCTATTTCAGAGAGAAGGAGGAGAAGGGGGTGTGTATGAATTTTTACCGCTACCGCTAACGCAACTATCAACTACTACATCTACTATGAAGAAATAAATATTCTATAAAATATACAAAACGTGAGCAAACACAACCACAAGCA] [+] EMBL BM650373 [CCGTATTTTTGTCCATACATTTTGGAAAAATGTAATCTTAATAAGTGTGTGTGTGTGAGAGAGAGGTAAAACATAGAGGGAAACAGTATAGCGAAGAGCACACCAAAACGATCGGTTCGTTAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCACCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCTCTCTGTCTCTGTTTTCTCTGCATCGAGCGTGGAGACAACGGATCTGTATGTTACCATTTCTTTTTTTTTATTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATAGGAGTGAAGGCGGAGAAGGCGGGCGAGTAAAGAGAAAGTATTTTTGAAACCATATTCCACATTACTATTTATCCGGTACAATTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAACTGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTTTTTTTATTTTTTATTTTTTATGTTAAGATATGTTTTCTTTGATTGCTTCGTAACTCGTGGAGGTGCTTTTGTGCTTCAAACCAAAT ] [+] EMBL BX625806 [ CTTCGTAACTCGTGGAGGTGCTTTTGTGCTTCAAACCAAATCTCATTTTTGCAGTATTTTTTAGTTTATTGAGTTGCAGCTACCAGTTTTGTTTTATATTTTTGGTTTAAATTTTGGTTTTTTGGGCTTTACGGCTGGTTCTAGTTGTTGTACATCAGGACAGGACTTGAGAACAAACGCTCCCGCTCTCGCTCTCTTTCTCTCTCTATCACACACTTTTGTGTGTATTGTGAACGATTTAGTATTTTGTTTTTCAGTGTATGAGATTTTTCGGTAACAATTTGGTTAATTTTGTTTGCGCTGATATGCGATCCACACATGCGAACCTGGGTGTAGTGGCACAGACAAGAGCGGGAAGGAAAAAGCCGTAAACATACAGAGCGTGTTATAAAAACAGCAGAGGATGAAGAAAAACGCGCGCAGAAGAATTTCAGCAGGTCAATTTCTCCGCTAGGCACCGTGCAAAACCAGTTACGCCTATGATTTCCCCTCAATTAAACAACTCCTGTGTGAAAGCGGAAGGAGCGTGCAAGACACACACACACGCACACCGCGATGGAATGTTTCTTTCTTGTACATGCGTTTATATTTCGGTCCCCAGTAAAAAAAAACTCCAACCAACAACCAACAGCACACCCCCAACGTACCCGAGGATCGTTCTTGTTTCACTTG TTTTTTTTTTTCGTTTTCCCCATTGTGCGAAATTAAGTACTGCGAAAAGAAGAAGGGCGCCTTAATGTTTAGGCAAATAGCAAAGGAGTAGGCTGAAAAGCAACCCCC ] [+] EMBL BX617267 [ GTAAAAAAAAACTCCAACCAACAACCAACAGCACACCCCCAACGTACCCGAGGATCGTTCTTGTTTCACTTGTTTTTTTTTTTTCGTTTTCCCCATTGTGCGAAATTAAGTACTGCGAAAAGAAGAAGGGCGCCTTAATGTTTAGGCAAATAGCAAAGGAGTAGGCTGAAAAGCAACCCCCCGCGCGAGGGACAACGGTTCGCATTTTCATCGGAAAAAAGGAAGCGAAAAGCACACGCAAATCCCTGGCCCTTGAAACGAAGTGTATCTGTGTTTTTTAAACGCTGAGATTGAAGAACAAGAGAAAAAAAAACACGAGAAAGACTAATAATGAGACGATGAGACGAGAAAATCAATCCTATTTCAGAGAGAAGGAGGAGAAGGGGGTGTGTATGAATTTTTACCGCTACCGCTAACGCAACTATCAACTACTACATCTACTATGAAGAAATAAATATTCTATAAAATATACAAAACGTGAGCAAACACAACCACAAGCA] consensusID : consensus_6308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [AGAATCGCCCGAGGGTTTTCTCTGCATCGAGCGTGGAGACAGCGGATCTGTATGTTACCATTTCTTTTTTTTTTTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATATGGAGTGAAGGCGGAGAGGGCGGGCGAGAAAGGAGAAAGTATTTTTGAAACCATTTTCCACATCACTATTTATCCGGTACAATTTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAACTGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTCTTTATTTTTTTATTTTTTATGTT] [+] EMBL AL932429 [AGAATCGCCCGAGGGTTTTCTCTGCATCGAGCGTGGAGACAGCGGATCTGTATGTTACCATTTCTTTTTTTTTTTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATATGGAGTGAAGGCGGAGAGGGCGGGCGAGAAAGGAGAAAGTATTTTTGAAACCATTTTCCACATCACTATTTATCCGGTACAATTTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAACTGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTCTTTATTTTTTTATTTTTTATGTT] consensusID : consensus_6308#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [GGCCAGAATCGCCACGAGGGTACGAAGAGCACACCACAACGATCGGTTCGTCAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCATCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCGTCTCTGGTCTCTGGTGTTCTCTGCATCGAGCGTGGAAACAGCGGATCTGTATGTTACCATTNCTTTTGGTGGATTGAAAGCACGAAACGGAAGAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGNG] [+] EMBL BX469204 [GGCCAGAATCGCCACGAGGGTACGAAGAGCACACCACAACGATCGGTTCGTCAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCATCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCGTCTCTGGTCTCTGGTGTTCTCTGCATCGAGCGTGGAAACAGCGGATCTGTATGTTACCATTNCTTTTGGTGGATTGAAAGCACGAAACGGAAGAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6308#0 CCGTATTTTTGTCCATACATTTTGGAAAAATGTAATCTTAATAAGTGTGTGTGTGTGAGA 60 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 GAGAGGTAAAACATAGAGGGAAACAGTATAGCGAAGAGCACACCAAAACGATCGGTTCGT 120 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCA 180 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 CCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCTCTCTGTCTC 240 consensus_6308#1 ----------------------------------------------AGAATCGCC-CGAG 13 consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TGTTTTCTCTGCATCGAGCGTGGAGACAACGGATCTGTATGTTACCATTTCTTTTTTTTT 300 consensus_6308#1 GGTTTTCTCTGCATCGAGCGTGGAGACAGCGGATCTGTATGTTACCATTTCTTTTTTTTT 73 consensus_6308#2 GGCCAGAATCGCCACGAGGGTACGAAGAGCACACCACAACG--ATCGGTTCGTC------ 52 * ** **** ** * * * * * * * * * *** * consensus_6308#0 ATTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTG 360 consensus_6308#1 -TTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTG 132 consensus_6308#2 ----AAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTC------TTCCGCTCG 102 **** * ** ** **** * ** * * ** * consensus_6308#0 AAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATA-GGAGTGAAGGCGGAGAAG 419 consensus_6308#1 AAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATATGGAGTGAAGGCGGAGAGG 192 consensus_6308#2 CATCTTCCATCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCG 162 * * * * ** *** *** * * * * * * * * * consensus_6308#0 GCGGGCGAGTAAAGAGAAAGTATTTTTGAAACCATATTCCACATTACT-ATTTATCCGGT 478 consensus_6308#1 GCGGGCGAGAAAGGAGAAAGTATTTTTGAAACCATTTTCCACATCACT-ATTTATCCGGT 251 consensus_6308#2 TCTCTGGTCTCTGGTGT-----TCTCTGCATCGAGCGTGGAAACAGCGGATCTGTATGTT 217 * * * * * * ** * * * * * * * ** * * * * consensus_6308#0 ACAATTTTTTTTTT-GCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAAC 537 consensus_6308#1 ACAATTTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAAC 311 consensus_6308#2 ACCATTNCTTTTGGTG--------GATTGAAAGCACGAAACGGAAGAAAATCGCATACAA 269 ** *** **** * ** * * ** * ** ** * * consensus_6308#0 TGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTTTTTTTATTT 597 consensus_6308#1 TGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTCTTTAT-TTT 370 consensus_6308#2 CGCGTCGGGAGAGG------ATCCTCCTTGAAAGTGATAATGGNG--------------- 308 * * * * *** * ** * ** * * * * consensus_6308#0 TTTATTTTTTATGTTAAGATATGTTTTCTTTGATTGCTTCGTAACTCGTGGAGGTGCTTT 657 consensus_6308#1 TTTATTTTTTATGTT--------------------------------------------- 385 consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TGTGCTTCAAACCAAATCTCATTTTTGCAGTATTTTTTAGTTTATTGAGTTGCAGCTACC 717 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 AGTTTTGTTTTATATTTTTGGTTTAAATTTTGGTTTTTTGGGCTTTACGGCTGGTTCTAG 777 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TTGTTGTACATCAGGACAGGACTTGAGAACAAACGCTCCCGCTCTCGCTCTCTTTCTCTC 837 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TCTATCACACACTTTTGTGTGTATTGTGAACGATTTAGTATTTTGTTTTTCAGTGTATGA 897 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 GATTTTTCGGTAACAATTTGGTTAATTTTGTTTGCGCTGATATGCGATCCACACATGCGA 957 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 ACCTGGGTGTAGTGGCACAGACAAGAGCGGGAAGGAAAAAGCCGTAAACATACAGAGCGT 1017 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 GTTATAAAAACAGCAGAGGATGAAGAAAAACGCGCGCAGAAGAATTTCAGCAGGTCAATT 1077 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TCTCCGCTAGGCACCGTGCAAAACCAGTTACGCCTATGATTTCCCCTCAATTAAACAACT 1137 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 CCTGTGTGAAAGCGGAAGGAGCGTGCAAGACACACACACACGCACACCGCGATGGAATGT 1197 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TTCTTTCTTGTACATGCGTTTATATTTCGGTCCCCAGTAAAAAAAAACTCCAACCAACAA 1257 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 CCAACAGCACACCCCCAACGTACCCGAGGATCGTTCTTGTTTCACTTGTTTTTTTTTTTC 1317 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 GTTTTCCCCATTGTGCGAAATTAAGTACTGCGAAAAGAAGAAGGGCGCCTTAATGTTTAG 1377 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 GCAAATAGCAAAGGAGTAGGCTGAAAAGCAACCCCCCGCGCGAGGGACAACGGTTCGCAT 1437 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TTTCATCGGAAAAAAGGAAGCGAAAAGCACACGCAAATCCCTGGCCCTTGAAACGAAGTG 1497 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TATCTGTGTTTTTTAAACGCTGAGATTGAAGAACAAGAGAAAAAAAAACACGAGAAAGAC 1557 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 TAATAATGAGACGATGAGACGAGAAAATCAATCCTATTTCAGAGAGAAGGAGGAGAAGGG 1617 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 GGTGTGTATGAATTTTTACCGCTACCGCTAACGCAACTATCAACTACTACATCTACTATG 1677 consensus_6308#1 ------------------------------------------------------------ consensus_6308#2 ------------------------------------------------------------ consensus_6308#0 AAGAAATAAATATTCTATAAAATATACAAAACGTGAGCAAACACAACCACAAGCA 1732 consensus_6308#1 ------------------------------------------------------- consensus_6308#2 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||