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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6309#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence
[AATCCCCCNAGGTTAAAAGGCATCTACCGGGTGCCGGGCACGTCACGCACGTCGATCTGCTGAACCAGAAGTTTGCTGAAGAATCCGGCATGTAATATACGAAAAGCTGGACATACCGGTGAATGCGGTCGCCACCGCACTGAAGGACTTCTTCGTGAAGCGTCTCAAGGGGCTGTTCAGTGCGGAAACTGATGAGCGAGCTGGAGGAAATAGCCGGCTCCCGGCCGCTCCAGTCCATCACGAGCCTTAACATGGAGGTGAAAACGGATCGGAGCTGCCGGCTGATCGCACTCCGCGGGCTGCTAAACAAGTTGCCGCCAAACAACTTTGCAACTACTGAGCTACATCTTCCAGCATTCTNGTACGTGTATCGGANAACTCGAAGCTCAACAGCATGGACAGCAAAAACTTTGGCCATCTGCTGGTGGCCGACACTGCTGCCGATCGAGTTCACCGACATGATGCGGTTCGAAACGATGCGCCCGTACTTGGAGGACATCGTGCAGACGATGATCGATCAGTATCCGTTCCTGTTCTGCGGCGAGGAAGCGTTCGTGATGGTCTGATGCGAGTAAGAGCAGCCCGCCAGCACCGTGTCAGCCGTGTCGGGAGGCGGGCAGAACGCTCGTATTTAGATGTTGTGTAGAGTTTGCCCCTGACGGTGTGCCTCCCTCCCCCGATTGCTGATGCAGGGGAGGATGAGCGCTGTTTGGGTGTTGGCTTCCAACTCGCAAGAGGGAAACTCACGCGTACACACAGTATTTGAGAAT]
[+] EMBL AL933343 [AATCCCCCNAGGTTAAAAGGCATCTACCGGGTGCCGGGCACGTCACGCACGTCGATCTGCTGAACCAGAAGTTTGCTGAAGAATCCGGCATGTAATATACGAAAAGCTGGACATACCGGTGAATGCGGTCGCCACCGCACTGAAGGACTTCTTCGTGAAGCGTCTCAAGGGGCTGTTCAGTGCGGAAACTGATGAGCGAGCTGGAGGAAATAGCCGGCTCCCGGCCGCTCCAGTCCATCACGAGCCTTAACATGGAGGTGAAAACGGATCGGAGCTGCCGGCTGATCGCACTCCGCGGGCTGCTAAACAAGTTGCCGCCAAACAACTTTGCAACTACTGAGCTACATCTTCCAGCATTCTNGTACGTGTATCGGANAACTCGAAGCTCAACAGCATGGACAGCAAAAACTTTGGCCATCTGCTGGTGGCCGACACTGCTGCCGATCGAGTTCACCGACATGATGCGGTTCGAAACGATGCGCCCGTACTTGGAGGACATCGTGCAGACGATGATCGATCAGTATCCGTTCCTGTTCTGCGGCGAGGAAGCG ]
[-] EMBL AGA283074 [ CGAGTTCACCGACATGATGCGGTTCGAAACGATGCGCCCGTACTTGGAGGACATCGTGCAGACGATGATCGATCAGTATCCGTTCCTGTTCTGCGGCGAGGAAGCGTTCGTGATGGTCTGATGCGAGTAAGAGCAGCCCGCCAGCACCGTGTCAGCCGTGTCGGGAGGCGGGCAGAACGCTCGTATTTAGATGTTGTGTAGAGTTTGCCCCTGACGGTGTGCCTCCCTCCCCCGATTGCTGATGCAGGGGAGGATGAGCGCTGTTTGGGTGTTGGCTTCCAACTCGCAAGAGGGAAACTCACGCGTACACACAGTATTTGAGAAT]
[-] EMBL AGA284647 [ GAGGAAGCGTTCGTGATGGTCTGATGCGAGTAAGAGCAGCCCGCCAGCACCGTGTCAGCCGTGTCGGGAGGCGGGCAGAACGCTCGTATTTAGATGTTGTGTAGAGTTTGCCCCTGACGGTGTGCCTCCCTCCCCCGATTGCTGATGCAGGGGAGGATGAGCGCTGTTTGGGTGTTGGCTTCCAACTCGCAAGAGGGAAACTCACGCGTACACACAGTATTTGAGAAT]
consensusID : consensus_6309#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence
[SMCCTCCAGGCAGTCCTCGCTGG-CAGCCTGAAGCAGCTCCGACAAAGTGCCGCTCGTG-CGCTGTTCGTGGAAGAAGTGTGTCAAATTCATCGAGCAAGGAAGGGCTCGACTCGGAAGGCATCTACCGGGTGCCGGGCAACCGCACGCACGTCGATCTGCTGAA-CAGAAGTTTGCTGAAGAATCGGATGTAGATATAGAAAAGCTGGACATACCGGTGAATGCGGTCGCCACCGCACTGAAGGACTTCTTCGTGAAGCGTCTCAAGGCGCTGTTCAGTGCGGAAATGATGAGCGAGCTGGAGGAAATAGCCGGCTCCCGGCCGCTCCAGTCCATCACGAGCCTTAACATGGAGGTG-AAACGGATCGGAGCTGCCGGCTGATCGCACTCCGCGGGCTGCTAAACAAGTTGCCGCCAAACAACTTTGCAATACTGAGCTACATCTTCCAGCATTTTGTACGTGTATCGGAAAACTCGAAGCTCAACAGCATG]
[+] EMBL AGA281473 [SMCCTCCAGGCAGTCCTCGCTGG CAGCCTGAAGCAGCTCCGACAAAGTGCCGCTCGTG CGCTGTTCGTGGAAGAAGTGTGTCAAATTCATCGAGCAAGGAAGGGCTCGACTCGGAAGGCATCTACCGGGTGCCGGGCAACCGCACGCACGTCGATCTGCTGAA CAGAAGTTTGCTGAAGAATCGGATGTAGATATAGAAAAGCTGGACATACCGGTGAATGCGGTCGCCACCGCACTGAAGGACTTCTTCGTGAAGCGTCTCAAGGCGCTGTTCAGTGCGGAAATGATGAGCGAGCTGGAGGAAATAGCCGGCTCCCGGCCGCTCCAGTCCATCACGAGCCTTAACATGGAGGTG AAACGGATCGGAGCTGCCGGCTGATCGCACTCCGCGGGCTGCTAAACAAGTTGCCGCCAAACAACTTTGCAATACTGAGCTACATCTTCCAGCATTTTGTACGTGTATCGGAAAACTCGAAGCTCAACAGCATG]
[+] EMBL AGA283355 [gcaCTCCA GCAGTCCTCGCTGGCCAGCCTGAAGCAG TCCGACAAAGTGCCGCTCGTGCCGCTGTTCGTGG AGAAGTGTGTCAAATTCATCGAGC AGGAAGGGCTCGACTCGGAAGGCATCTACCGGGTGCCGGGCAACCGCACGCACGTCGATCTGCTGAACCAGAAGTTTGCTGAAGAATCGGATGTAGATATAGAAAAGCTGGACATACCGGTGAATGCGGTCGCCACCGCACTGAAGGACTTCTTCGTGAAGCGTCTCAAGGGGCTGTTCAGTGCGGAAATGATGAGCGAGCTGGAGGAAATAGCCGGCTCCCGGCCGCTCCAGTCCATCACGAGCCTTAACATGGAGGTGAAAACGGATCGGAGCTGCCGGCTGATTGCACTCCGCGGGCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6309#0 ------------------------------------------------------------
consensus_6309#1 SMCCTCCAGGCAGTCCTCGCTGGCAGCCTGAAGCAGCTCCGACAAAGTGCCGCTCGTGCG 60
consensus_6309#0 --------------------------------------AATCCCCCNAGGTTAAAAGGCA 22
consensus_6309#1 CTGTTCGTGGAAGAAGTGTGTCAAATTCATCGAGCAAGGAAGGGCTCGACTCGGAAGGCA 120
* * * ******
consensus_6309#0 TCTACCGGGTGCCGGGCA-CGTCACGCACGTCGATCTGCTGAACCAGAAGTTTGCTGAAG 81
consensus_6309#1 TCTACCGGGTGCCGGGCAACCGCACGCACGTCGATCTGCTGAAC-AGAAGTTTGCTGAAG 179
****************** * ********************** ***************
consensus_6309#0 AATCCGGCATGTAATATACGAAAAGCTGGACATACCGGTGAATGCGGTCGCCACCGCACT 141
consensus_6309#1 AATCGGATGTA-GATATA-GAAAAGCTGGACATACCGGTGAATGCGGTCGCCACCGCACT 237
**** * * ***** *****************************************
consensus_6309#0 GAAGGACTTCTTCGTGAAGCGTCTCAAGGGGCTGTTCAGTGCGGAAACTGATGAGCGAGC 201
consensus_6309#1 GAAGGACTTCTTCGTGAAGCGTCTCAAGGCGCTGTTCAGTGCGGAAA-TGATGAGCGAGC 296
***************************** ***************** ************
consensus_6309#0 TGGAGGAAATAGCCGGCTCCCGGCCGCTCCAGTCCATCACGAGCCTTAACATGGAGGTGA 261
consensus_6309#1 TGGAGGAAATAGCCGGCTCCCGGCCGCTCCAGTCCATCACGAGCCTTAACATGGAGGTGA 356
************************************************************
consensus_6309#0 AAACGGATCGGAGCTGCCGGCTGATCGCACTCCGCGGGCTGCTAAACAAGTTGCCGCCAA 321
consensus_6309#1 AA-CGGATCGGAGCTGCCGGCTGATCGCACTCCGCGGGCTGCTAAACAAGTTGCCGCCAA 415
** *********************************************************
consensus_6309#0 ACAACTTTGCAACTACTGAGCTACATCTTCCAGCATTCTNGTACGTGTATCGGANAACTC 381
consensus_6309#1 ACAACTTTGCAA-TACTGAGCTACATCTTCCAGCATT-TTGTACGTGTATCGGAAAACTC 473
************ ************************ * ************** *****
consensus_6309#0 GAAGCTCAACAGCATGGACAGCAAAAACTTTGGCCATCTGCTGGTGGCCGACACTGCTGC 441
consensus_6309#1 GAAGCTCAACAGCATG-------------------------------------------- 489
****************
consensus_6309#0 CGATCGAGTTCACCGACATGATGCGGTTCGAAACGATGCGCCCGTACTTGGAGGACATCG 501
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 TGCAGACGATGATCGATCAGTATCCGTTCCTGTTCTGCGGCGAGGAAGCGTTCGTGATGG 561
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 TCTGATGCGAGTAAGAGCAGCCCGCCAGCACCGTGTCAGCCGTGTCGGGAGGCGGGCAGA 621
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 ACGCTCGTATTTAGATGTTGTGTAGAGTTTGCCCCTGACGGTGTGCCTCCCTCCCCCGAT 681
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 TGCTGATGCAGGGGAGGATGAGCGCTGTTTGGGTGTTGGCTTCCAACTCGCAAGAGGGAA 741
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 ACTCACGCGTACACACAGTATTTGAGAAT 770
consensus_6309#1 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||