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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1399 fasta sequence
[CCGAGTTGGTGGCCCGGTGGTGGTGGCGGCACCGTTCGTGCTGCGTGCTCCCGAAACGACCGTGTACTTCCGGACGGTTCGTCAGAAACCGCGGTCCACACTAACTACCACCACGCGGCTAGTCGTTCTTCCAATCGGCAATGAATCGATTGTCTAGAAGCAACGGACGAACGTGTGTGTGTTGGAGTTGTCTTTCGTTGTCTTGCGCATCTTGAAATGAGTTAGATTCTTTTTTTCTCTTGTTTTGCTACTTTTATTTGTATCAAACCTTCACAATTAGTACACCTTTATACTAATTACACTTTTCTTTTCCCATTCCACTCTCTCTCTCTCTCTCTCTCTCACATCGTTTGCAGGTTCTGCACCGTTCGCTAGCTATACCCCAGTTAAAGCCGCCATAGACACGACCTTCGAGCTGGGTGTGACCCGTACACCGTCCCCGTCGGCAGCAAGTACGGCCAGCAGCACGGGCTCGAACGGAAGCCTTACCTCCGCCTCGAACCACAGCAGCAATAGTCATCATTCCGCCACATCCGCCTCATCCTCCGCCAGCAGTGAGAAGAAGCAGCATTTGCCGCACACTGTACCGAACGGTCATCACCATCCGGTGGACCGATCGAACAGCAACGGTCTGCACAGCAGCAACGGCCATAGCGGATCACCGGACGGTGGTGCCACCCTGCTCCTGAACGGCGGAACCGGCGCAGCCGACGGCGATGCGCTGTTCAATGGGGCAACGGGCGAACCGGAAAGCATTCAGTACCTTAAGCCGGCCTCGGACGAACAGACGGTTAACTGGAGCCAGGGCACGCGCGTTACGGATCTGCTGTTCTAGGGCAGGCACACACCTTCGCACACAGGGTCCAGCACACACACACACACATACATTTTGTACAGAGTTTATGCTTTAGTTTTTAGTTGAATCGAACTGCAGACGACAGCACACACACACACACAGTGTAATAGTGTAGCGCGAGGACAAGCATAGCGGCTCCTCCATCAAGCGAAGATCGCAGATCGCCACATCCGGTTCTCTGTCGGTTTGTGTGCCGAAACGATACATATACATAGTTTCTTTTGGGGTTTTTTTTTTCATTGGCAAAAGTCGACTTGGAGCAGCGCTCGTGTCGTTGCTTTCCCGGGATGTAAACAGTTTCAGTCTAATAATTGCAAATTTTCCACCATTTTAAGTCCATTTGCTGTGTGTCCCAAACTGCTGGGGCGCACGGGACATGTGGGCGAGTGTCGCTTAGCAGTTGTACTCTTTTGTAGNGGTCTGTAATTGAACATATAACGTGAAAAACATTCCATTTTTTGCAGTTTTATGAATTTTTCTCTTTCTTTTCTGGATTATTGTGTTTGGAGTTACATCCACACACAATAATCCAAAAAAAAAAAA]
[+] EMBL BM636832 [CCGAGTTGGTGGCCCGGTGGTGGTGGCGGCACCGTTCGTGCTGCGTGCTCCCGAAACGACCGTGTACTTCCGGACGGTTCGTCAGAAACCGCGGTCCACACTAACTACCACCACGCGGCTAGTCGTTCTTCCAATCGGCAATGAATCGATTGTCTAGAAGCAACGGACGAACGTGTGTGTGTTGGAGTTGTCTTTCGTTGTCTTGCGCATCTTGAAATGAGTTAGATTCTTTTTTTCTCTTGTTTTGCTACTTTTATTTGTATCAAACCTTCACAATTAGTACACCTTTATACTAATTACACTTTTCTTTTCCCATTCCACTCTCTCTCTCTCTCTCTCTCTCACATCGTTTGCAGGTTCTGCACCGTTCGCTAGCTATACCCCAGTTAAAGCCGCCATAGACACGACCTTCGAGCTGGGTGTGACCCGTACACCGTCCCCGTCGGCAGCAAGTACGGCCAGCAGCACGGGCTCGAACGGAAGCCTTACCTCCGCCTCGAACCACAGCAGCAATAGTCATCATTCCGCCACATCCGCCTCATCCTCCGCCAGCAGTGAGAAGAAGCAGCATTTGCCGCACACTGTACCGAACGGTCATCACCATCCGGTGGACCGATCGAACAGCAACGGTCTGCACAGCAGCAACGGCCATAGCGGATCACCGGACGGTGGTGCCACCCTGCT ]
[+] EMBL BM615173 [ ccgCGACCTTCGAGCTGGGTGTGACCCGTACACCGTCCCCGTCGGCAGCAAGTACGGCCAGCAGCACGGGCTCGAACGGAAGCCTTACCTCCGCCTCGAACCACAGCAGCAATAGTCATCATTCCGCCACATCCGCCTCATCCTCCGGCAGCAGTGAGAAGAAGCAGCATTTGCCGCACACTGTACCGAACGGTCACCACCATCCGGTGGACCGATCGA ]
[+] EMBL BX620572 [ TTGCCGCACACTGTACCGAACGGTCATCACCATCCGGTGGACCGATCGAACAGCAACGGTCTGCACAGCAGCAACGGCCATAGCGGATCACCGGACGGTGGTGCCACCCTGCTCCTGAACGGCGGAACCGGCGCAGCCGACGGCGATGCGCTGTTCAATGGGGCAACGGGCGAACCGGAAAGCATTCAGTACCTTAAGCCGGCCTCGGACGAACAGACGGTTAACTGGAGCCAGGGCACGCGCGTTACGGATCTGCTGTTCTAGGGCAGGCACACACCTTCGCACACAGGGTCCAGCACACACACACACACATACATTTTGTACAGAGTTTATGCTTTAGTTTTTAGTTGAATCGAACTGCAGACGACAGCACACACACACACACAGTGTAATAGTGTAGCGCGAGGACAAGCATAGCGGCTCCTCCATCAAGCGAAGATCGCAGATCGCCACATCCGGTTCTCTGTCGGTTTGTGTGCCGAAACGATACATATACATAGTTTCTTTTGGGGTTTTTTTTTTCATTGGCAAAAGTCGACTTGGAGCAGCGCTCGTGTCGTTGCTTTCCCGGGATGTAAACAGTTTCAGTCTAATAATTGCAAATTTTCCACCATTTTAAGTCCATTTGCTGTGTGTCCCAAACTGCTGGGGCGCACGGGACATGTGGGCGAGTGTCGCTTAGCAGTTGTACTCTTTTGTAGNGGTCTGTAA ]
[-] EMBL AGA281476 [ GACATGTGGGCGAGTGTCGCTTAGCAGTTGTACTCTTTTGTAGTGGTCTGTAATTGAACATATAACGTGAAAAACATTCCATTTTTTGCAGTTTTATGAATTTTTCTCTTTCTTTTCTGGATTATTGTGTTTGGAGTTACATCCACACACAATAATCCAAAAAAAAAAAA]
consensusID : consensus_6312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGGTCGTCGCCCCTGGCCGGGCTGGTGCCGGTGCGCAAAAAGACGAAACCGCCGCCGAGCCACCAGCAGGAGGGCACCAACACGATGGTGTTCAACTTTAGCGACCGCAAGGACGTGCCGGACTATATCGAGAACGATGGTGTCATCATCCGGCCACGCCCGAGAGAGCTGCCCAAGCCTGGCGAGTCCGGTTTCGTGGTGTTGGGCGACCTAACCCTGGAAACGTCGACCGATCCGGACGATGCGTGGGCCGCCGGTCCGCCATCGCCGTGCAACGGTGAATTCGCCAACGCCTACATCGTGATCAATGGCAAATCGAGCATGAGAAACAAGACTAGTAGAAGTAATAATAAGTTCAAAATTCAGTTCGACGATTCGCTTACCTCCACGTACGAGTACCCGTCGGAAACGTCGCTGCTGGAAGAGACGAACGGATTCGACGGTGTGGACAACGGGACGGACACGAACGGTGCCAGCGCCTTCGCCGACAACGGGCTCCTTTCGCACACGAACAAACTCCTCTCCTCGGTGCCACTTGGTTCTGCACCGTTCGCTAGCTATACCCCAGTTAAAGCCGCCATAGACACGACCTTCGAAGCTGGGTGTGACCCGTACACCGTCCCCGTCGGCAGCAAGTACGGCCAGCAGCACAGGCTCGAACGGAAGCCTTACCTCCGCCTC]
[+] EMBL BM579299 [CCGGTCGTCGCCCCTGGCCGGGCTGGTGCCGGTGCGCAAAAAGACGAAACCGCCGCCGAGCCACCAGCAGGAGGGCACCAACACGATGGTGTTCAACTTTAGCGACCGCAAGGACGTGCCGGACTATATCGAGAACGATGGTGTCATCATCCGGCCACGCCCGAGAGAGCTGCCCAAGCCTGGCGAGTCCGGTTTCGTGGTGTTGGGCGACCTAACCCTGGAAACGTCGACCGATCCGGACGATGCGTGGGCCGCCGGTCCGCCATCGCCGTGCAACGGTGAATTCGCCAACGCCTACATCGTGATCAATGGCAAATCGAGCATGAGAAACAAGACTAGTAGAAGTAATAATAAGTTCAAAATTCAGTTCGACGATTCGCTTACCTCCACGTACGAGTACCCGTCGGAAACGTCGCTGCTGGAAGAGACGAACGGATTCGACGGTGTGGACAACGGGACGGACACGAACGGTGCCAGCGCCTTCGCCGACAACGGGCTCCTTTCGCACACGAACAAACTCCTCTCCTCGGTGCCACTTGGTTCTGCACCGTTCGCTAGCTATACCCCAGTTAAAGCCGCCATAGACACGACCTTCGAAGCTGGGTGTGACCCGTACACCGTCCCCGTCGGCAGCAAGTACGGCCAGCAGCACAGGCTCGAACGGAAGCCTTACCTCCGCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6312#0 CCGAGTTGGTGGCCCGGTGGTGGTGGCGGCACCGTTCGTGCTGCGTGCTCCCGAAACGAC 60
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CGTGTACTTCCGGACGGTTCGTCAGAAACCGCGGTCCACACTAACTACCACCACGCGGCT 120
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 AGTCGTTCTTCCAATCGGCAATGAATCGATTGTCTAGAAGCAACGGACGAACGTGTGTGT 180
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 GTTGGAGTTGTCTTTCGTTGTCTTGCGCATCTTGAAATGAGTTAGATTCTTTTTTTCTCT 240
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TGTTTTGCTACTTTTATTTGTATCAAACCTTCACAATTAGTACACCTTTATACTAATTAC 300
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 ACTTTTCTTTTCCCATTCCACTCTCTCTCTCTCTCTCTCTCTCACATCGTTTGCAGGTTC 360
consensus_6312#1 ----------------------------------------------CCGGTCGTCGCCCC 14
** * * * *
consensus_6312#0 TGCACCGTTCGCTAGCTATACCCCAGTTAAAGCCGCCATAGACAC-GACCTTCGAGCTGG 419
consensus_6312#1 TGGCCGGGCTGGTGCCGGTGCGCAA---AAAGACGAAACCGCCGCCGAGCCACCAGCAGG 71
** * * * * * * * * * **** ** * * * * ** * * *** **
consensus_6312#0 GTGTGACCCGTAC-ACCGTCCCCGTCGGCAGCAAGTACGGCCAGCAGCACGGGCTCGAAC 478
consensus_6312#1 AGGGCACCAACACGATGGTGTTCAACTTTAGCGACCGCAAGGACGTGC-CGGACTATATC 130
* *** ** * ** * * *** * * * ** *** ** * *
consensus_6312#0 GGAAGCCTTACCTCCGCC-TCGAACCACAGCAGCAATAGTCATCATTCCGCCACATCCGC 537
consensus_6312#1 GAGAACGATGGTGTCATCATCCGGCCACGCCCGAGAGAGCTGCC-------CAAGCCTGG 183
* * * * * * ** **** * * * ** * ** * *
consensus_6312#0 CTCATCCTCCGCCAGCAGTGAGAAGAAGCAGCATTTGCCGCACACTGTACCGAACGGTCA 597
consensus_6312#1 CGAGTCCGGTTTC----GTGGTGTTGGGCGACCTAACCCTGGAAACGT--CGACCGATCC 237
* *** * *** ** * * ** * ** *** ** **
consensus_6312#0 TCACCATCCGGTGGACCGATCGAACAGCAACGGTCTGCACAGCAGCAACGGCCATAGCGG 657
consensus_6312#1 GGACGATGCG-TGGGCCGCCGGTCCGCCATCGCCGTGCAACGGTGAATTCGCCAACGCCT 296
** ** ** *** *** * * ** ** **** * * * **** **
consensus_6312#0 ATCACCGGACGGTGGTGCCACCCTGCTCCTGAACGGCGGAACCGGCGCAGCCGACGGCGA 717
consensus_6312#1 ACATCGTGAT--CAATGGCAAATCGAGCATGAGAAACAAGACTAGTAGAAGTAATAATAA 354
* * ** ** ** * * *** * ** * * * *
consensus_6312#0 -TGCGCTGTTCAATGGGGCAACGGGCGAACCGGAAAGCATTCAGTACCTTAAGCCGGCCT 776
consensus_6312#1 GTTCAAAATTCAGTTCGACGATTCGCTTACCTCCACGTACG-AGTACCCGTCGGAAACGT 413
* * **** * * * * ** *** * * * ****** * * *
consensus_6312#0 CGGACGAACAGACGGTTAACTGGAGCCAGGGCACGCGCGTTACGGATCTGCTGTTCTAGG 836
consensus_6312#1 CGCTGCTGGAAGAGACGAACGGATTCGACGGTGTGGACAACG-GGACGGACACGAACGGT 472
** * * *** * * * ** * * *** * *
consensus_6312#0 GCAGGCACACACCTTCGCACACAGGGTCCA---GCACACACACACACACATACATTTTGT 893
consensus_6312#1 GCCAGCGC-CTTCGCCGACAACGGGCTCCTTTCGCACACGAACAAACTCCTCTCCTCGGT 531
** ** * * * ** ** ** *** ****** *** ** * * * **
consensus_6312#0 ACAGAGT--TTATGCTTTAGTTTTTAGTTGAATCGAACTGCAGACGACAGCACACACACA 951
consensus_6312#1 GCCACTTGGTTCTGCACCGTTCGCTAGCTATACCCCAGTTAAAGCCGCCATAGACACG-A 590
* * ** *** * *** * * * * * * * * * **** *
consensus_6312#0 CACACAGTGTAATAGTGTAGCGCGAGGACAAGCATAGCGGCTCCTCCATCAAGCGAAGAT 1011
consensus_6312#1 CCTTCGAAGCTG-GGTGTGACCCGTACACCGTCCCCGTCGGCAGCAAGTACGGCCAGCAG 649
* * * **** * ** ** * * * * ** * *
consensus_6312#0 CGCAGATCGCCACATCCGGTTCTCTGTCGGTTTGTGTGCCGAAACGATACATATACATAG 1071
consensus_6312#1 CACAGGCTCGAACGGAAGCCTTACCTCCGCCTC--------------------------- 682
* *** ** * * * ** *
consensus_6312#0 TTTCTTTTGGGGTTTTTTTTTTCATTGGCAAAAGTCGACTTGGAGCAGCGCTCGTGTCGT 1131
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TGCTTTCCCGGGATGTAAACAGTTTCAGTCTAATAATTGCAAATTTTCCACCATTTTAAG 1191
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TCCATTTGCTGTGTGTCCCAAACTGCTGGGGCGCACGGGACATGTGGGCGAGTGTCGCTT 1251
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 AGCAGTTGTACTCTTTTGTAGNGGTCTGTAATTGAACATATAACGTGAAAAACATTCCAT 1311
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TTTTTGCAGTTTTATGAATTTTTCTCTTTCTTTTCTGGATTATTGTGTTTGGAGTTACAT 1371
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CCACACACAATAATCCAAAAAAAAAAAA 1399
consensus_6312#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||