These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1523 fasta sequence [TGGCACTTGGCGGTCCGGCTTCGCTCGACGCCGACAGCGAGCTTAGCTCGTACGTGTGGATCTGCACCAGCACCCATTCGGCCAGCACGGTAACGGTGATCGATGCGAAAAATCCATCCGAAGTGTTGGATTCTTCCCCCGGGTGTGCCAGAATCATTTGCTGTGCATCTGCACCGTTCGCGGAGCGCTCGAGATGGATTACGCAATGCTGGAAAACAGCGAAGTTACCAAATCGGGTAAAATGCTTGAAAAGCCAGGCGAATCTCCTGACGATATAGGAAAAGTATCGTACGAAAAGGTTGTACGCAGCGCTGCCGAGTCCGCGCCAACTTCGGCAGACGAGCATAAAGCTACGGAAGAAGCACAGGAAGCGGTGCCACCATCCGATACAGTCCCAGAACAAGCTACCGAAGCTAACAGCGATCGTGATCTTAATCACAACAGTAAGGCCGCCCATGAAGTCCTAGACAGCGTAGACACGAAAGACATTGCGATTGCGGTCGATGGGAACGATAATACGATCGGCGAGACCACCTCCTCACCCAGCAAACCGCAGCCCGAGACAGCAATCGAAGAGTCGATCTCCTCGATCGGTCCGACCATGTGGCTGGGCGCTCAGAACGGAATGCTGTACGTGCACAGTTCCGTGGCAAGATGGAACGTGTGTCTGCACAAAATCAAGCTGCCCGACTCNGTGCTATCGATAGTGCACGTCGAGTCGCGTGTCATCGTTGCGCTGGCGAACGGAACGTTGGCAGTGTTTCGGCGGCAGGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTTTTGACGCTTGGCTCGCCGAAGTACTCTGTGCGTTGTCTTACGATCGTCGGTGACAAGGTTTGGGCGGCTCACCGCAACAAGATACACGTGATCGATCCCATCACGCTGTGCATTCTGAAATCGTTCGAAGCTCATCCACGGAAGGAAAGCCAAATTCGCCAGATGGCTACTACGGGGCTGGGTGTGTGGGTATCTATAAGATTGGATTCGACTCTAAGGCTCTTCTCCGCGGAAACGTACGATCATCTGGAAGACATCGATATCGATCCTTACGTGTCGAAGATGTTGGGCACCGGAAAGCTCGGCTTTTCGTTTGTGCGCATTACCGCTCTGCTGGTATCGTGCAATAGGCTGTGGATAGGAACCGGCAACGGTGTGGTGATTTCAGTTCCACTGACTGACGCTAGCGGTGCTTCCAATACACCATACTCTCCGCGCTTCGCAAATGCTCAACTTTCGTTCCACGGGCACCGCGATGCAGTGAAGTTCTTTGTGTCCGTGCCGATGAACCCGCCCAATCAGGGGCTACCAACCACTTCGAAGGATATGCTGGTAATATCCGGCGGAGAGGGATACATCGATTTTCGGTTAGGTGACGGTGATATGGAGGCGAGTGTCGAGCTAGAACCGAACCAAACCATAGAGAATCGCAATGAGAAGAGCTACATTATCGTGTGGAAAGTCAGCAATCGTTAAGATACGGTGTATTGGACTG] [+] EMBL BX623793 [TGGCACTTGGCGGTCCGGCTTCGCTCGACGCCGACAGCGAGCTTAGCTCGTACGTGTGGATCTGCACCAGCACCCATTCGGCCAGCACGGTAACGGTGATCGATGCGAAAAATCCATCCGAAGTGTTGGATTCTTCCCCCGGGTGTGCCAGAATCATTTGCTGTGCATCTGCACCGTTCGCGGAGCGCTCGAGATGGATTACGCAATGCTGGAAAACAGCGAAGTTACCAAATCGGGTAAAATGCTTGAAAAGCCAGGCGAATCTCCTGACGATATAGGAAAAGTATCGTACGAAAAGGTTGTACGCAGCGCTGCCGAGTCCGCGCCAACTTCGGCAGACGAGCATAAAGCTACGGAAGAAGCACAGGAAGCGGTGCCACCATCCGATACAGTCCCAGAACAAGCTACCGAAGCTAACAGCGATCGTGATCTTAATCACAACAGTAAGGCCGCCCATGAAGTCCTAGACAGCGTAGACACGAAAGACATTGCGATTGCGGTCGATGGGAACGATAATACGATCGGCGAGACCACCTCCTCACCCAGCAAACCGCAGCCCGAGACAGCAATCGAAGAGTCGATCTCCTCGATCGGTCCGACCATGTGGCTGGGCGCTCAGAACGGAATGCTGTACGTGCACAGTTCCGTGGCAAGATGGAACGTGTGTCTGCACAAAATCAAGCTGCCCGACTCNGTGCTATCGATAGTGCACGTCGAGTCGCGTGTCATCGTTGCGC ] [+] EMBL BM642852 [ ccGAAAACAGCGAAGTTACCAAATCGGGTAAAATGCTTGAAAAGCCAGGCGAATCTCCTGACGATATAGGAAAAGTATCGTACGAAAAGGTTGTACGCAGCGCTGCCGATTCCGCGCCAACTTCGGCAGACGAGCATAAAGCTACGGAAGAAGCACAGGAAGCGGTGCCACCATCCGATACAGTCCCAGAACAAGCTACCGAAGCTAACAGCGATCGTGATCTTAATCACAACAGTAAGGCGGCCCATGAAGTCCTAGACAGCGTAGACACGAAAGACATTGCGATTGCGGTCGATGGGAACGATAATACGATCGGCGAGACCACCTCCTCACCCAACAAACCGCAGCCCGAGACAGCGATCGAAGAGTCGATCTCGTCGATCGGTCCAACCATGTGGCTGGGCGCTCAGAACGGCATGCTGTACGTGCACAGTTCCGTGGCAAGATGGAACGTGTGTCTGCATAAAATCAAGCTGCCCGACTCGGTGCTATCGATAGTGCACGTCGAGTCGCGTGTCATCGTTGCGCTGGCGAACGGAACGTTGGCAGTGTTTCGGCGGCAGGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTTTTGACGCTTGG ] [+] EMBL BX624609 [ CATCGTTGCGCTGGCGAACGGAACGTTGGCAGTGTTTCGGCGGCAAGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTACTGACGCTTGGCTCGCCGAAGTACTCTGTGCGTTGTCTTACGATCGTCGGTGACAAGGTTTGGGCGGCTCACCGCAACAAGATACACGTGATCGATCCCATCACGCTGTGCATTCTGAAATCGTTCGAAGCTCATCCACGGAAGGAAAGCCAAATTCGCCAGATGGCTACTACGGGGCTGGGTGTGTGGGTATCTATAAGATTGGATTCGACTCTAAGGCTCTTCTCCGCGGAAACGTACGATCATCTGGAAGACATCGATATCGATCCTTACGTGTCGAAGATGTTGGGCACCGGAAAGCTCGGCTTTTCGTTTGTGCGCATTACCGCTCTGCTGGTA ] [+] EMBL BM604060 [ ccgACGGGATCGATCCCATCACGCTGTGCATTCTGAAATCGTTCGAAGCTCATCCACGCAAGGAAAGCCAAATTCGCCAGATGGCTACTACGGGGCTGGGTGTGTGGGTATCTATAAGATTGGATTCGACTTTAAGGCTCTTCTCCGCGGAAACGTACGATCATCTGGAAGACATCGACATCGATCCTTACGTGTCGAAGATGTTGGGCACCGGAAAGCTCGGCTTTTCGTTTGTGCGCATTACCGCTCTGCTGGTATCGTGCAATAGGCTGTGGATAGGAACCGGCAACGGTGTGGTGATTTCAGTTCCACTGACTGACGCTAGCGGTGCTTCCAATACACCATACTCTCCGCGCTTCGCAAATGCTCAACTTTCGTTCCACGGGCACCGCGATGCAGTGAAGTTCTTTGTGTCCGTGCCGATGAACCCGCCCAATCAGGGGCTACCAACCACTTCGAAGGATATGCTGGTAATATCCGGCGGAGAGGGATACATCGATTTTCGGTTAGGTGACGGTGATATGGAGGCGAGTGTCGAGCTAGAACCGAACCAAACCATAGAGAATCGCAATGAGAAGAGCTACATTATCGTGTGGAAAGTCAGCAATCGTTAAGATACGGTGTATTGGACTG] consensusID : consensus_6313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1046 fasta sequence [TNCCCCCGCAGGTTAATCGAGTCGCGTGTCATCGTTGCGCTGGTGAACGGAACGTTGGCAGTGTTTCGGCGGCAAGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTACTGACGCTTGGCTCGCCGAAGTACTACTGTGCGTTGTCTTACGATCGTACGGTGACAAGGTTTTGGGCGGTCACCGAACAAGATACACGTGATCGATCCCATCACGCTGTGCCATTCTGAAATCGTTCCGAAAGCGTCATACCACGGAAGGAAAGCCCAAATTCGGCAGAATGGCGTACATACAGGGGCCTGGGTTGTGTTGGGGTATCTNATTACAGAATATGGATTCCGCACCTTACTCAAGAGNGTCTATACATACCGCGGCAAAAACGTAACCGATNCATACTTGGGAANAACATACGNATATACAGAACCCTATACGTNGTTCCGNAACGAATCGTTANGGGAAACNCGGCAACAGGCTCGCGCTTAACACGCAAAGATNGGCGGCACTATTAAAACCGGCGATCCACTGNCATGGATAAATCAGAGATGCCACAACATAACAGNCAAGGNNAGGCGACCCTTAANGGANAAACCCCCGCNCCAACACACGGACATGGANGAAGANNGAAAAACACACNACACGACAATCCCCACCCCCTGNACANCCCATGNACCANCCNCAANNCCGCGCCTGCCGACTCCAAAACAAACACACCANAACNACCAACCCAGGCCGAGCCCNGNACGGCCCCNAACACNGGANAGCGCCACACGCNACACACACCCGGACACCTCCCCACACCNCCGCGCGCCACCACCCCGCCGACACGTAGCCCACAGAGTGCAAAAGGANACACCACACAGGATGGATACCACGAAGCCGACCGGANCNGGAAAACCCGCCGGCCACCCCACACNACCANACGCGGGGCGCAGCNACCACCAANAACNCCACCCACACAGCACAACAGGNACANCAAANGAGCCNTAGGAGGCGACAACCACTCCCAGAGCGNNGAGAGNNGCAAACGANGACAGAACACCANCAC] [+] EMBL AL694500 [TNCCCCCGCAGGTTAATCGAGTCGCGTGTCATCGTTGCGCTGGTGAACGGAACGTTGGCAGTGTTTCGGCGGCAAGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTACTGACGCTTGGCTCGCCGAAGTACTACTGTGCGTTGTCTTACGATCGTACGGTGACAAGGTTTTGGGCGGTCACCGAACAAGATACACGTGATCGATCCCATCACGCTGTGCCATTCTGAAATCGTTCCGAAAGCGTCATACCACGGAAGGAAAGCCCAAATTCGGCAGAATGGCGTACATACAGGGGCCTGGGTTGTGTTGGGGTATCTNATTACAGAATATGGATTCCGCACCTTACTCAAGAGNGTCTATACATACCGCGGCAAAAACGTAACCGATNCATACTTGGGAANAACATACGNATATACAGAACCCTATACGTNGTTCCGNAACGAATCGTTANGGGAAACNCGGCAACAGGCTCGCGCTTAACACGCAAAGATNGGCGGCACTATTAAAACCGGCGATCCACTGNCATGGATAAATCAGAGATGCCACAACATAACAGNCAAGGNNAGGCGACCCTTAANGGANAAACCCCCGCNCCAACACACGGACATGGANGAAGANNGAAAAACACACNACACGACAATCCCCACCCCCTGNACANCCCATGNACCANCCNCAANNCCGCGCCTGCCGACTCCAAAACAAACACACCANAACNACCAACCCAGGCCGAGCCCNGNACGGCCCCNAACACNGGANAGCGCCACACGCNACACACACCCGGACACCTCCCCACACCNCCGCGCGCCACCACCCCGCCGACACGTAGCCCACAGAGTGCAAAAGGANACACCACACAGGATGGATACCACGAAGCCGACCGGANCNGGAAAACCCGCCGGCCACCCCACACNACCANACGCGGGGCGCAGCNACCACCAANAACNCCACCCACACAGCACAACAGGNACANCAAANGAGCCNTAGGAGGCGACAACCACTCCCAGAGCGNNGAGAGNNGCAAACGANGACAGAACACCANCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6313#0 TGGCACTTGGCGGTCCGGCTTCGCTCGACGCCGACAGCGAGCTTAGCTCGTACGTGTGGA 60 consensus_6313#1 -------TNCCCCCGCAGGTTAA-TCGA-GTCGCGTGTCATCGTTGCGCTGGTGAACGGA 51 * * * * ** **** * ** * * * * ** * * *** consensus_6313#0 TCTGCACCAGCACCCATTCGGCCAGCACGGTAACGGTGATCGATGCGAAAAATCCATCCG 120 consensus_6313#1 ---ACGTTGGCAGTGTTTCGGC-GGCAAGTTAGCGGCGAGTGGGATCTTAACAGCTACCA 107 * *** ****** *** * ** *** ** * ** * ** consensus_6313#0 AAGTGTTGGATTCTTCCCCCGGGTGTGCCAGAATCATTTGCTGTGCATCTGCACCGTTCG 180 consensus_6313#1 TCTACTGACGCTTGGCTCGCCGAAGTACTACTGTGCGTTGTCTTACGATCGTACGGTG-A 166 * * * * * * ** * * * *** * * * ** ** consensus_6313#0 CGGAGCGCTCGAGATGGATTACGCAATGCTGGAAAACAGCGAAGTTACCAAATCGGGTAA 240 consensus_6313#1 CAAGGTTTTGGGCGGTCACCGAACAA-GATACACGTGATCGATCCCATCACGCTG--TGC 223 * * * * * *** * * * * *** * ** * * consensus_6313#0 AATGCTTGAAAAGCCAGGCGAATCTCCTGACGATATAGGAAAAGTATCGTACG--AAAAG 298 consensus_6313#1 CATTCTGAAATCGTTCCGAAAGCGTCATACCACGGAAGGAAAGCCCAAATTCGGCAGAAT 283 ** ** ** * * * ** * * ****** * ** * ** consensus_6313#0 GTTGTACGCAGCGCTGCCGAGTCCGCGCCAACTTCGGCAGACGAGCATAAAGCTACGGAA 358 consensus_6313#1 GGCGTACATACAGGGGCCTGGGTTGTGTTGG----GGTATCTNATTACAGAA-TATGGAT 338 * **** * * *** * * * ** * * * * * ** *** consensus_6313#0 GAAGCACAGGAAGCGGTGCCACCATCCGATACAGTCCCAGAACAAGCTACCGAAGCTAAC 418 consensus_6313#1 TCCGCACCTTACTCAAGAGNGTCTATACATACCGCGGCAAAA-ACGTAACCGATNCATAC 397 **** * * * **** * ** ** * * ***** * ** consensus_6313#0 AGCGATCGTGATCTTAATCACAACAGTAAGGCCGCCCATGAAGTCCTAGACAGCGTAGAC 478 consensus_6313#1 T----TGGGAANAACATACGNATATACAGAACCCTATACGTNGTTCCGNAACGAATCGTT 453 * * * * * * * ** * * ** * * * * * consensus_6313#0 ACGAAAGACATTGCGATTGCGGTCGATGGGAACGATAATACGATCGGCGAGACCACCTCC 538 consensus_6313#1 ANGGGAAACNCGGCAACAG-GCTCGCGCTTAAC-ACGCAAAGATNGGCGGCACTATTAA- 510 * * * ** ** * * * *** *** * * *** **** ** * consensus_6313#0 TCACCCAGCAAACCGCAGCCCGAGACAGCAATCGAAGAGTCGATCTCCTCGATCGGTCCG 598 consensus_6313#1 --AACCGGCGATCCACTGNCATGGATA--AATCAGAGATGCCACAACAT-AACAGNCAAG 565 * ** ** * ** * * * ** * **** *** * * * * * * * consensus_6313#0 ACCATGTGGCTGGGCGCTCAGAACGGAATGCTGTACGTGCACAGTTCCGTGGCAAGATGG 658 consensus_6313#1 GNNAGGCGACC---CTTAANGGANAAACCCCCGCNCCAACACACGGACATGG--ANGAAG 620 * * * * * * * * * * * **** * *** * * consensus_6313#0 AACGTGTGTCTGCACAAAATCAAGCTGCCCGACTCN-GTGCTATCGATAGTGCACGTCGA 717 consensus_6313#1 ANNGAAAAAC-ACACNACACGACAATCCCCACCCCCTGNACANCCCATGNACCANCCNCA 679 * * * *** * * * * *** * * * * * ** ** * consensus_6313#0 GTCGCGTGTCATCGTTGCGCTGGCGAACGGAACGTTGGCAGTGTTTCGGCGGCAGGTTAG 777 consensus_6313#1 ANNCCGCGCC----TGCCGACTCCAAAACAAACAC-ACCANAACNACCAACCCAGGCCGA 734 ** * * * ** * ** *** ** * **** consensus_6313#0 CGGCGAGTGGGATCTTAACAGCTACCATCTTTTGACGCTTGGCTCGCCGAAGTAC-TCTG 836 consensus_6313#1 GCCCNGNACGGCCCCNAACACNGGANAGCGCCACACGCNACACACACCCGGACACCTCCC 794 * ** * **** * * **** * * ** ** ** consensus_6313#0 TGCGTTGTCTTACGAT-CGTCGGTGACAAGGTTTGGGCGGCTCACCGCAACAAGATACAC 895 consensus_6313#1 CACACCNCCGCGCGCCACCACCCCGCCGACACGTAGCCCACAGAGTGCAAAAGGANACAC 854 * * ** * * * * * * * * * * **** * ** **** consensus_6313#0 GTGATCGATCCCATCACGCTGTGCATTCTGAAATCGTTCGAAGCTCATCCACGGAAGGAA 955 consensus_6313#1 ---------CACA-CAGGATGGATACCACGAAGCCGACCGGANCN-------GGAAAACC 897 * ** ** * ** * *** ** ** * * **** consensus_6313#0 AGCCAAATTCGCCAGATGGCTACTACGGGGCTGGGTGTGTGGGTATCTATAAGATTGGAT 1015 consensus_6313#1 CGCCGGCCACCCCA------CACNACCANACGCGGGGCGCAGCNACCACCAANA----AC 947 *** * *** ** ** * ** * * * * * ** * * consensus_6313#0 TCGACTCTAAGGCTCTTCTCCGCGGAAACGTACGATCATCTGGAAGACATCGATATCGAT 1075 consensus_6313#1 NCCACCC----ACACAGCACAACAGGNACANCAAANGAGCCNTAGGAGGCGACAACCACT 1003 * ** * * * * * * * ** * * * * ** * * * consensus_6313#0 CCTTACGTGTCGAAGATGTTGGGCACCGGAAAGCTCGGCTTTTCGTTTGTGCGCATTACC 1135 consensus_6313#1 CCCAGAGCGNNGAGAGNNGCAAACGANG-ACAGAACACCANCAC---------------- 1046 ** * * ** * * * ** * * * consensus_6313#0 GCTCTGCTGGTATCGTGCAATAGGCTGTGGATAGGAACCGGCAACGGTGTGGTGATTTCA 1195 consensus_6313#1 ------------------------------------------------------------ consensus_6313#0 GTTCCACTGACTGACGCTAGCGGTGCTTCCAATACACCATACTCTCCGCGCTTCGCAAAT 1255 consensus_6313#1 ------------------------------------------------------------ consensus_6313#0 GCTCAACTTTCGTTCCACGGGCACCGCGATGCAGTGAAGTTCTTTGTGTCCGTGCCGATG 1315 consensus_6313#1 ------------------------------------------------------------ consensus_6313#0 AACCCGCCCAATCAGGGGCTACCAACCACTTCGAAGGATATGCTGGTAATATCCGGCGGA 1375 consensus_6313#1 ------------------------------------------------------------ consensus_6313#0 GAGGGATACATCGATTTTCGGTTAGGTGACGGTGATATGGAGGCGAGTGTCGAGCTAGAA 1435 consensus_6313#1 ------------------------------------------------------------ consensus_6313#0 CCGAACCAAACCATAGAGAATCGCAATGAGAAGAGCTACATTATCGTGTGGAAAGTCAGC 1495 consensus_6313#1 ------------------------------------------------------------ consensus_6313#0 AATCGTTAAGATACGGTGTATTGGACTG 1523 consensus_6313#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||