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Anopheles gambiae
cluster # 6316 cluster # 6316       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6316#0 length = 804 sequences # 3  
consensus_6316#1 length = 789 sequences # 1  
consensus_6316#2 length = 452 sequences # 1  

consensusID : consensus_6316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 804
fasta sequence
                              [AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTAGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGC-AAATGAATGGAAGGGGAGACACAGGAT-AAGAAGCAGTGT-AACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACCA-CTAATGTGCATATTT-CATTT-CAT-CACTCGTAGCAATTGATGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAGAGGGAATGTTGACTTGGATTCTAGTGGGTTTGGAATGT-GGAACAATC-AAAGAACGAAGGACAAAACGATGGTTTTGGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCC-AAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAATATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTTAACATTGTACGGCTGCA]

[+] EMBL AL696068             [AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTAGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGC AAATGAATGGAAGGGGAGACACAGGAT AAGAAGCAGTGT AACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACCA CTAATGTGCATATTT CATTT CAT CACTCGTAGCAATTGATGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAGAGGGAATGTTGACTTGGATTCTAGTGGGTTTGGAATGTNGGAACAATCAAAAGAACGAAGGACAAAAC                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM632711             [                                                         ccgGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGCAAAATGAATGGAAGGGGAGACACAGGATAAAGAAGCAGTGTAAACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACAACCTAATGTGCATATTTACATTTACATACACTCGTAGCAATTGATGATAATGCTGAGAATAGGACGAAACGGAACAGGATACGAA GAAA GGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGA GGGAGAGAGAGAGGGAATG TGA TTGGATT TAGTGGGTTTGGAATGT GGAACAATC AAAGAACGAAGGACAAAACGATGGTTTTGGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCC AAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAATATATGTGTT                                                                                  ]
[+] EMBL BX612769             [                                                                                                                                                                                                                                                                                                                                                                                                                 ATGT GGAACAATC AAAGAACGAAGGACAAAACGATGGTTTTCGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGA TTCCGTTTTTAAGGAC TTTTTATCCTTTCCAAACACAACAATATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTTAACATTGTACGGCTGCA]


>consensus_6316#0 AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTA GAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGCAAATGAATGGAAGGGGAGACACA GGATAAGAAGCAGTGTAACACACTGACACACACACACACACACAAAATAAACAAAGCTTA CAATAAGTGAAACGATTACCACTAATGTGCATATTTCATTTCATCACTCGTAGCAATTGA TGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGA GAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAG AGGGAATGTTGACTTGGATTCTAGTGGGTTTGGAATGTGGAACAATCAAAGAACGAAGGA CAAAACGATGGTTTTGGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATC AAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGAT ACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGC AGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAA GCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAATATATGTG TTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGG CCCTTTTAACATTGTACGGCTGCA



consensusID : consensus_6316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 789
fasta sequence
                              [CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGAGACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGAGGGAGAGAGAGAGGGAATGTGATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAGGACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANACACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAACCATGCAAGCGAACNAGATTCCGTTATAAGGACTTTATCCTATACCAAACACAACCATATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAGATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAGACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGATCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAATAGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAGACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT]

[+] EMBL AL692647             [CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGAGACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGAGGGAGAGAGAGAGGGAATGTGATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAGGACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANACACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAACCATGCAAGCGAACNAGATTCCGTTATAAGGACTTTATCCTATACCAAACACAACCATATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAGATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAGACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGATCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAATAGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAGACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT]


>consensus_6316#1 CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGAGACGGGAGTGNTGGTCTTGGACTGTAGA CGATTGATTGATACGAGAGAGGGAGAGAGAGAGGGAATGTGATTGGATTATAGTGGGTTC TGGAATGTGGAACAATCAAAGCAACGAAGGACAAANCGNTGGTTTCTGGTTTGGTGGCTG GCGTGGCCCATTCGCTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTACAACTCA AACGTAACACACCATCAACATGCACANACACAGATACGCATTTTACGGTCTTTCCNAACA CAAANAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCACNAACGGTTCAAACAA CGTAAACGCCTTGGCCACAGATTTCGAACCATGCAAGCGAACNAGATTCCGTTATAAGGA CTTTATCCTATACCAAACACAACCATATATGTGTACGGGTGCATGTGCTGGTGCGTGTGT GTGTGTGANGCTGANGNTGTGGAAAGATACAGCAGTTGACCCCCTATNTGNAAACATTGN TACGCGAATGCCAGNCAACANACCAGACGTACAACCGAAACCGGAAGANTGCATTGTTGN GANACTCAAGCGGCTTCCGTGACAGATCGGCGGACATGTGGCCGCNGGNTGGGTCACCCG CTCATTCCGCGANTAATATAGGAAATAGTACANACANTCGGCANTTCGACTACACGTAGG AAGGGAGGGNTTCAGAAAGAGGGAAGACAAATGNTNCTTTGACAGTTAAAAAAAACGCCG GATAGTGAT



consensusID : consensus_6316#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence
                              [ATCCCCCGAGTAAAACGATGGTTTCGTTGGTGGCTGCGTGGCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTCCGTTTTTAAGGACTTTTTATCCTTTCCAAACACAACAATATATGTGTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTGAACATTGTACGGCTGCAGCACAACAGAGTACACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG]

[+] EMBL AL694583             [ATCCCCCGAGTAAAACGATGGTTTCGTTGGTGGCTGCGTGGCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTCCGTTTTTAAGGACTTTTTATCCTTTCCAAACACAACAATATATGTGTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTGAACATTGTACGGCTGCAGCACAACAGAGTACACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG]


>consensus_6316#2 ATCCCCCGAGTAAAACGATGGTTTCGTTGGTGGCTGCGTGGCCATTCGTTGTTGTACGGT CTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACA CACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAG TAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAAC CATGCAAGCGAAAAGATTCCGTTTTTAAGGACTTTTTATCCTTTCCAAACACAACAATAT ATGTGTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAG TTGGCCCTTTGAACATTGTACGGCTGCAGCACAACAGAGTACACGATCGAGATGATGTGG AATTAGCACTTCGAGAGTCGGGTGGTGTGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6316#0      AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTA 60
consensus_6316#2      ------------------------------------------------------------
consensus_6316#1      ------------------------------------------------------------
                                                                                  

consensus_6316#0      GAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGCAAATGAATGGAAGGGGAGACACA 120
consensus_6316#2      ------------------------------------------------------------
consensus_6316#1      ------------------------------------------------------------
                                                                                  

consensus_6316#0      GGATAAGAAGCAGTGTAACACACTGACACACACACACACACACAAAATAAACAAAGCTTA 180
consensus_6316#2      ------------------------------------------------------------
consensus_6316#1      ------------------------------------------------------------
                                                                                  

consensus_6316#0      CAATAAGTGAAACGATTACCACTAATGTGCATATTTCATTTCATCACTCGTAGCAATTGA 240
consensus_6316#2      ------------------------------------------------------------
consensus_6316#1      ------------------------------------------------------------
                                                                                  

consensus_6316#0      TGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGA 300
consensus_6316#2      ------------------------------------------------------------
consensus_6316#1      ----------------------------CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGA 32
                                                                                  

consensus_6316#0      GAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAG 360
consensus_6316#2      ------------------------------------------------------------
consensus_6316#1      GACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGA-GGGAGAGAGAG 91
                                                                                  

consensus_6316#0      AGGGAATGTTGACTTGGATTCTAGTGGGTT-TGGAATGTGGAACAATCAAAG-AACGAAG 418
consensus_6316#2      ---------------------------------------------------A-TCCCCCG 8
consensus_6316#1      AGGGAATGT--GATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAG 149
                                                                             *   *

consensus_6316#0      GACAAAACGATGGTTTT--GGTTGGTGGCTGGCGTGGCCCATTCG-TTGTTGTACGGTCT 475
consensus_6316#2      AGTAAAACGATGGTTTC--G-TTGGTGGCTG-CGTGGCC-ATTCG-TTGTTGTACGGTCT 62
consensus_6316#1      GACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCT 209
                         *** ** ******   * ********** ******* ***** **************

consensus_6316#0      CAATCAAAACGGGTCATTTTCTT-CAACTCAAACGTAACACACCATCAACATGCACACAC 534
consensus_6316#2      CAATCAAAACGGGTCATTTTCTT-CAACTCAAACGTAACACACCATCAACATGCACACAC 121
consensus_6316#1      CAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANAC 269
                      *********************** ********************************* **

consensus_6316#0      ACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGT 594
consensus_6316#2      ACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGT 181
consensus_6316#1      ACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGT 329
                      ***************   *   ** * ** * *** ************************

consensus_6316#0      AGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGC-ACAGATTTCGAAC 653
consensus_6316#2      AGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGC-ACAGATTTCGAAC 240
consensus_6316#1      AGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAAC 389
                      ***************  ******* ** ****************** *************

consensus_6316#0      CATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAAT 713
consensus_6316#2      CATGCAAGCGAAAAGATT-CCGTTTTTAAGGACTTTTT-ATCCTTTCCAAACACAACAAT 298
consensus_6316#1      CATGCAAGCGAACNAGATTCCGTTAT-AAGGACTTTAT--CCTATACCAAACACAACCAT 446
                      ************     * ***** * ********* *   *  *  * ******** **

consensus_6316#0      ATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTG--TGTGTGTGTGGAAG- 770
consensus_6316#2      ATATGTGTT-GTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTG--TGTGTGTGTGGAAG- 354
consensus_6316#1      ATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAG 506
                      ********  * *****************************    **    *******  

consensus_6316#0      ---TAAGAGTTGGCCCTTTT------AACATTGT---ACGGCTGCA-------------- 804
consensus_6316#2      ---TAAGAGTTGGCCCTTTG------AACATTGT---ACGGCTGCAGCACAACAGAGTAC 402
consensus_6316#1      ATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAG 566
                          *  ***** ***  *       *******     **  ***               

consensus_6316#0      ------------------------------------------------------------
consensus_6316#2      ACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG---------- 452
consensus_6316#1      ACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGA 626
                                                                                  

consensus_6316#0      ------------------------------------------------------------
consensus_6316#2      ------------------------------------------------------------
consensus_6316#1      TCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAAT 686
                                                                                  

consensus_6316#0      ------------------------------------------------------------
consensus_6316#2      ------------------------------------------------------------
consensus_6316#1      AGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAG 746
                                                                                  

consensus_6316#0      -------------------------------------------
consensus_6316#2      -------------------------------------------
consensus_6316#1      ACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT 789
                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)