These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 804 fasta sequence [AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTAGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGC-AAATGAATGGAAGGGGAGACACAGGAT-AAGAAGCAGTGT-AACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACCA-CTAATGTGCATATTT-CATTT-CAT-CACTCGTAGCAATTGATGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAGAGGGAATGTTGACTTGGATTCTAGTGGGTTTGGAATGT-GGAACAATC-AAAGAACGAAGGACAAAACGATGGTTTTGGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCC-AAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAATATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTTAACATTGTACGGCTGCA] [+] EMBL AL696068 [AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTAGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGC AAATGAATGGAAGGGGAGACACAGGAT AAGAAGCAGTGT AACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACCA CTAATGTGCATATTT CATTT CAT CACTCGTAGCAATTGATGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAGAGGGAATGTTGACTTGGATTCTAGTGGGTTTGGAATGTNGGAACAATCAAAAGAACGAAGGACAAAAC ] [+] EMBL BM632711 [ ccgGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGCAAAATGAATGGAAGGGGAGACACAGGATAAAGAAGCAGTGTAAACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACAACCTAATGTGCATATTTACATTTACATACACTCGTAGCAATTGATGATAATGCTGAGAATAGGACGAAACGGAACAGGATACGAA GAAA GGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGA GGGAGAGAGAGAGGGAATG TGA TTGGATT TAGTGGGTTTGGAATGT GGAACAATC AAAGAACGAAGGACAAAACGATGGTTTTGGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCC AAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAATATATGTGTT ] [+] EMBL BX612769 [ ATGT GGAACAATC AAAGAACGAAGGACAAAACGATGGTTTTCGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGA TTCCGTTTTTAAGGAC TTTTTATCCTTTCCAAACACAACAATATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTTAACATTGTACGGCTGCA] consensusID : consensus_6316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence [CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGAGACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGAGGGAGAGAGAGAGGGAATGTGATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAGGACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANACACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAACCATGCAAGCGAACNAGATTCCGTTATAAGGACTTTATCCTATACCAAACACAACCATATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAGATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAGACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGATCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAATAGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAGACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT] [+] EMBL AL692647 [CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGAGACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGAGGGAGAGAGAGAGGGAATGTGATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAGGACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANACACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAACCATGCAAGCGAACNAGATTCCGTTATAAGGACTTTATCCTATACCAAACACAACCATATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAGATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAGACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGATCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAATAGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAGACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT] consensusID : consensus_6316#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [ATCCCCCGAGTAAAACGATGGTTTCGTTGGTGGCTGCGTGGCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTCCGTTTTTAAGGACTTTTTATCCTTTCCAAACACAACAATATATGTGTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTGAACATTGTACGGCTGCAGCACAACAGAGTACACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG] [+] EMBL AL694583 [ATCCCCCGAGTAAAACGATGGTTTCGTTGGTGGCTGCGTGGCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTCCGTTTTTAAGGACTTTTTATCCTTTCCAAACACAACAATATATGTGTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTGAACATTGTACGGCTGCAGCACAACAGAGTACACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6316#0 AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTA 60 consensus_6316#2 ------------------------------------------------------------ consensus_6316#1 ------------------------------------------------------------ consensus_6316#0 GAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGCAAATGAATGGAAGGGGAGACACA 120 consensus_6316#2 ------------------------------------------------------------ consensus_6316#1 ------------------------------------------------------------ consensus_6316#0 GGATAAGAAGCAGTGTAACACACTGACACACACACACACACACAAAATAAACAAAGCTTA 180 consensus_6316#2 ------------------------------------------------------------ consensus_6316#1 ------------------------------------------------------------ consensus_6316#0 CAATAAGTGAAACGATTACCACTAATGTGCATATTTCATTTCATCACTCGTAGCAATTGA 240 consensus_6316#2 ------------------------------------------------------------ consensus_6316#1 ------------------------------------------------------------ consensus_6316#0 TGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGA 300 consensus_6316#2 ------------------------------------------------------------ consensus_6316#1 ----------------------------CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGA 32 consensus_6316#0 GAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAG 360 consensus_6316#2 ------------------------------------------------------------ consensus_6316#1 GACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGA-GGGAGAGAGAG 91 consensus_6316#0 AGGGAATGTTGACTTGGATTCTAGTGGGTT-TGGAATGTGGAACAATCAAAG-AACGAAG 418 consensus_6316#2 ---------------------------------------------------A-TCCCCCG 8 consensus_6316#1 AGGGAATGT--GATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAG 149 * * consensus_6316#0 GACAAAACGATGGTTTT--GGTTGGTGGCTGGCGTGGCCCATTCG-TTGTTGTACGGTCT 475 consensus_6316#2 AGTAAAACGATGGTTTC--G-TTGGTGGCTG-CGTGGCC-ATTCG-TTGTTGTACGGTCT 62 consensus_6316#1 GACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCT 209 *** ** ****** * ********** ******* ***** ************** consensus_6316#0 CAATCAAAACGGGTCATTTTCTT-CAACTCAAACGTAACACACCATCAACATGCACACAC 534 consensus_6316#2 CAATCAAAACGGGTCATTTTCTT-CAACTCAAACGTAACACACCATCAACATGCACACAC 121 consensus_6316#1 CAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANAC 269 *********************** ********************************* ** consensus_6316#0 ACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGT 594 consensus_6316#2 ACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGT 181 consensus_6316#1 ACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGT 329 *************** * ** * ** * *** ************************ consensus_6316#0 AGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGC-ACAGATTTCGAAC 653 consensus_6316#2 AGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGC-ACAGATTTCGAAC 240 consensus_6316#1 AGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAAC 389 *************** ******* ** ****************** ************* consensus_6316#0 CATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAAT 713 consensus_6316#2 CATGCAAGCGAAAAGATT-CCGTTTTTAAGGACTTTTT-ATCCTTTCCAAACACAACAAT 298 consensus_6316#1 CATGCAAGCGAACNAGATTCCGTTAT-AAGGACTTTAT--CCTATACCAAACACAACCAT 446 ************ * ***** * ********* * * * * ******** ** consensus_6316#0 ATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTG--TGTGTGTGTGGAAG- 770 consensus_6316#2 ATATGTGTT-GTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTG--TGTGTGTGTGGAAG- 354 consensus_6316#1 ATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAG 506 ******** * ***************************** ** ******* consensus_6316#0 ---TAAGAGTTGGCCCTTTT------AACATTGT---ACGGCTGCA-------------- 804 consensus_6316#2 ---TAAGAGTTGGCCCTTTG------AACATTGT---ACGGCTGCAGCACAACAGAGTAC 402 consensus_6316#1 ATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAG 566 * ***** *** * ******* ** *** consensus_6316#0 ------------------------------------------------------------ consensus_6316#2 ACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG---------- 452 consensus_6316#1 ACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGA 626 consensus_6316#0 ------------------------------------------------------------ consensus_6316#2 ------------------------------------------------------------ consensus_6316#1 TCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAAT 686 consensus_6316#0 ------------------------------------------------------------ consensus_6316#2 ------------------------------------------------------------ consensus_6316#1 AGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAG 746 consensus_6316#0 ------------------------------------------- consensus_6316#2 ------------------------------------------- consensus_6316#1 ACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT 789 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||