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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence
[CCGCCCACGCGTCCGCTTGCAGCAACACGCTAACGCTAACAAGCACCCGTGGCCCCGTACCGGTACCGATTTGTCGAGGGTCACTTGTCCTAAAGTTTGCCGTTTGCCCCTCCCGGGCCATTCCCACCCACAGAGCAGAGCAACAACTCGTGATATCGACAGCACCACCGCTCATTGCGTCTTTCGTTTTAAATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGCGGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTCTGTATTATGGGCGGCTAACTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGGCCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTGCCTGAAACACTGTGACACATAAGCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGTTACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCGTAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCATGTGCACTGGCGCAGCAAGGCAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCACCGACACCGTCCGTACCGATCGCGCCCGGCGAAAAGCAG]
[+] EMBL BM648661 [CCGCCCACGCGTCCGCTTGCAGCAACACGCTAACGCTAACAAGCACCCGTGGCCCCGTACCGGTACCGATTTGTCGAGGGTCACTTGTCCTAAAGTTTGCCGTTTGCCCCTCCCGGGCCATTCCCACCCACAGAGCAGAGCAACAACTCGTGATATCGACAGCACCACCGCTCATTGCGTCTTTCGTTTTAAATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGCGGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTCTGTATTATGGGCGGCTAACTCCGTG ]
[+] EMBL BM656707 [ ccgCAAGCACCCGTGGCCCCGTACCGGTACCGATTTGTCGAGGGTCACTTGTCCTAAAGTTTGCCGTTTGCCCCTCCCGGGCCATTCCCACCCACAGAGCAGAGCAGCAACTCGTGATATCGACAGCACCACCGCTCATTGCGTCTTTCGTTTTAGATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGCGGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTCTGTATTATGGGCGGCTAGCTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGGCCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTGCCTGAAACACTGTGACACATAAGCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGTTACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCGTAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCATGTGCACTGGCGCAGCAAGGCAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCACCGACACCGTCCGTACCGATCGCGCCCGGCGAAAAGCAG]
consensusID : consensus_6318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[CCGCTTGCAGCAACACGCTAACGTTAACAAGCACCCGTGGCCCCGTACCGATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGCGGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTCTGTATTATGGGCGGCTAGCTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGGCCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTGCCTGAAACACTGTGACACATAAGCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGTTACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCGTAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCATGTGCACTGGCGCAGCAAGGCAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCACCGACACCGTCCGTACCGATCGCGCCCGGCGAAAAGCAGTTCCGGGTGGTGTACGAATGGAACGTGCTCGATTTTGCCTTCACCAATGAAGGATGAGCGTGCGCAGGCCCTGTACAGTGGACACTACATCCCGAAAAATGTGATCATCTCGGACTGTAA]
[+] EMBL BM644144 [CCGCTTGCAGCAACACGCTAACGTTAACAAGCACCCGTGGCCCCGTACCGATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGCGGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTCTGTATTATGGGCGGCTAGCTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGGCCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTGCCTGAAACACTGTGACACATAAGCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGTTACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCGTAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCATGTGCACTGGCGCAGCAAGGCAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCACCGACACCGTCCGTACCGATCGCGCCCGGCGAAAAGCAGTTCCGGGTGGTGTACGAATGGAACGTGCTCGATTTTGCCTTCACCAATGAAGGATGAGCGTGCGCAGGCCCTGTACAGTGGACACTACATCCCGAAAAATGTGATCATCTCGGACTGTAA]
consensusID : consensus_6318#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence
[CCGGGATGATCTTGCAGCAACACGCTAACGCTAACAAGCACCCGTGGCCCCGTACCGCACTTGTCCTAAAGTTTGCCGTTTGCCCCTCCCGGGCCATTCCCACCCACAGAGCAGAGCAGCAACTCGTGATATCGACAGCACCACCGCTCATTGCGTCTTTCGTTTTAGATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGCGGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTCTGTATTATGGGCGGCTAGCTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGGCCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTGCCTGAAACACTGTGACACATAACCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGTTACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCGTAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCATGTGCACTGGCGCAGCAAGACAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCA]
[+] EMBL BM621165 [CCGGGATGATCTTGCAGCAACACGCTAACGCTAACAAGCACCCGTGGCCCCGTACCGCACTTGTCCTAAAGTTTGCCGTTTGCCCCTCCCGGGCCATTCCCACCCACAGAGCAGAGCAGCAACTCGTGATATCGACAGCACCACCGCTCATTGCGTCTTTCGTTTTAGATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGCGGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTCTGTATTATGGGCGGCTAGCTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGGCCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTGCCTGAAACACTGTGACACATAACCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGTTACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCGTAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCATGTGCACTGGCGCAGCAAGACAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCA]
[+] EMBL BX625958 [ GCTCGTTGAAAGTGAAGCGTTACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCGTAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6318#0 CCGCCCACGCGTCCGCTTGCAGCAACACGCTAACGCTAACAAGCACCCGTGGCCCCGTAC 60
consensus_6318#2 -----CCGGGATGATCTTGCAGCAACACGCTAACGCTAACAAGCACCCGTGGCCCCGTAC 55
consensus_6318#1 ------------------------------------------------------------
consensus_6318#0 CGGTACCGATTTGTCGAGGGTCACTTGTCCTAAAGTTTGCCGTTTGCCCCTCCCGGGCCA 120
consensus_6318#2 CG-------------------CACTTGTCCTAAAGTTTGCCGTTTGCCCCTCCCGGGCCA 96
consensus_6318#1 ------------------------------------------------------------
consensus_6318#0 TTCCCACCCACAGAGCAGAGCAACAACTCGTGATATCGACAGCACCACCGCTCATTGCGT 180
consensus_6318#2 TTCCCACCCACAGAGCAGAGCAGCAACTCGTGATATCGACAGCACCACCGCTCATTGCGT 156
consensus_6318#1 ------------CCGCTT-GCAGCAACACGC--TAACGTTAACA--AGCACCCGTGGCCC 43
** *** **** ** ** ** * ** * * * * * **
consensus_6318#0 CTTTCGTTTTAAATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGC 240
consensus_6318#2 CTTTCGTTTTAGATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGC 216
consensus_6318#1 CGTACC-----GATCAAAACACGATCCAAGTGAAGTGATAATTGGCGCTTGCCGAGTTGC 98
* * * ************************************************
consensus_6318#0 GGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTC 300
consensus_6318#2 GGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTC 276
consensus_6318#1 GGTACGTTTTCGTGTGTAACGCTGTGTATGTGTGTGTAGGTGTGACTATTTGTGTATGTC 158
************************************************************
consensus_6318#0 TGTATTATGGGCGGCTAACTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGG 360
consensus_6318#2 TGTATTATGGGCGGCTAGCTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGG 336
consensus_6318#1 TGTATTATGGGCGGCTAGCTCCGTGTTCGACTTTAGCTCCGAATCAACAGCAGTGTCCGG 218
***************** ******************************************
consensus_6318#0 CCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTG 420
consensus_6318#2 CCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTG 396
consensus_6318#1 CCGGTGCTCGTAGCAAGAAGAACCAGGTCACCAATATCATCTCTGTCTGTTTTAAAGGTG 278
************************************************************
consensus_6318#0 CCTGAAACACTGTGACACATAAGCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGT 480
consensus_6318#2 CCTGAAACACTGTGACACATAACCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGT 456
consensus_6318#1 CCTGAAACACTGTGACACATAAGCGTCACCTACACATCAGGCTCGTTGAAAGTGAAGCGT 338
********************** *************************************
consensus_6318#0 TACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCG 540
consensus_6318#2 TACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCG 516
consensus_6318#1 TACGATCATTTACGGCGAGACATCAAATTAATTGATTTAAAACGTTGACCGTTTCGGGCG 398
************************************************************
consensus_6318#0 TAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCA 600
consensus_6318#2 TAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCA 576
consensus_6318#1 TAACCCAACGTGACCATGGCACTGGGACGCAAGCTGATTGCGTTCGCCCTTGTGGTCTCA 458
************************************************************
consensus_6318#0 TGTGCACTGGCGCAGCAAGGCAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCA 660
consensus_6318#2 TGTGCACTGGCGCAGCAAGACAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCA 636
consensus_6318#1 TGTGCACTGGCGCAGCAAGGCAGCGACGACGGCTCGCCGCCCCTCGACAGCCTGAGTCCA 518
******************* ****************************************
consensus_6318#0 CCGACACCGTCCGTACCGATCGCGCCCGGCGAAAAGCAG--------------------- 699
consensus_6318#2 ------------------------------------------------------------
consensus_6318#1 CCGACACCGTCCGTACCGATCGCGCCCGGCGAAAAGCAGTTCCGGGTGGTGTACGAATGG 578
consensus_6318#0 ------------------------------------------------------------
consensus_6318#2 ------------------------------------------------------------
consensus_6318#1 AACGTGCTCGATTTTGCCTTCACCAATGAAGGATGAGCGTGCGCAGGCCCTGTACAGTGG 638
consensus_6318#0 ---------------------------------------
consensus_6318#2 ---------------------------------------
consensus_6318#1 ACACTACATCCCGAAAAATGTGATCATCTCGGACTGTAA 677
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||