These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1754 fasta sequence [TCAAGCATGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCCCTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTCCCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTGACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGCGCAATCTAACCATTCAACGGTATGCGGTGATCCCGCTGAGCACCAACTCGGGTCTGATCGGTTGGGTGCCCCACTGTGACACGCTGCACAAGCTGATCCGGGACTATCGCGATTCGAAGAAAACGATGCTAAACATCGAGCATAGGATCATGCTGCGAATGGCACCGGACTACGACCATCTCACGGTGATGCAGAAGGTGGAGGTGTTTGAGCATGCGCTTGATCAAACGAAAGGAGACGATCTGGCGAAGCTGCTCTGGCTGAAAAGCCCTTCGTCGGAGCAGTGGTTTGATCGGCGCACGAACTACATCCGCTCCCTTGCGGTCATGTCGATGGTGGGCTACATCTTGGGTCTCGGCGATCGCCATCCTTCCAATCTGATGCTGGATAGGTTGAGTGGAAAAATTCTTCACATCGATTTCGGCGATTGCTTCGAGGTTGCAATGACGCGAGAAAAGTTCCCGGAGAAAATACCCTTCCGCTTGACGCGCATGCTGATCAACGCGATGGAGGTGACCGGCATCGAAGGAACGTATCGGCGCACGTGCGAGAGCGTAATGAACGTGCTGCGCCGTAACAAGGACAGTCTTATGGCGGTACTGGAAGCGTTCGTGTACGATCCGCTGCTCAACTGGCGCCTGCTAGATTCGGACCGATTGCGTCGT-TCAAAGAACGCCGGTGACATGGACAGCGTGTCGGGCAGCATGCACGAAGACTCTCTGCTGAGCTACAATGCCAGACGCGATGCTCGGTTGAATGAGCTGAATGCAACGACGGGACCGGCCGCCGGAGGTCAACCGTCGGCTACCGTGAATGTTCCTTCCGGTGGTACGACGGGCGCCATTCCCGTACCGAGCGCTTCCGGTGCTGCTGTGCCGCCAGGAGGTGATGCGCCCGATGGCAACTACCCCGCGATGCAGAATCCCGTCGACGTAACCAATAAGAAGGCACGTGCAATTGTCGATCGAGTGAAGGACAAGCTGACCGGCAAAGATTTCGGCAAAGCAGAACCAGTGGCCGTCAATAGACAGATCGACCTGCTGATCCAGCAGGCAACCAGGCAACGAAAATCTGTGCCAGTGCTATATCGGCTGGTGTCCGTTTTGGTAAAGGAGCTTTGGTTGGTGTGTGGGTTTGAACATGTTGTTGCCTGCTTGCAATGCTTTTCTACACGTGTGCGCGTCTACGCTGCTAGCACCATCGTCATAAAGTATGTCGTGCCTGTATTGTACCGTTTGTATTGGTAGACATACTTTGGTNTCCCCATGGGGAATTACTGTTGGAAGTGTGTATTGCCCNCGGATATATTCGATGGATTTNGGTTATGACCGTTGACTGGTTTAAGCNGTTCAGCGTTNATAACNGCTTCATTGNGTATTACANNNGAATTTCCAA] [+] EMBL BX622502 [TCAAGCATGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCCCTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTCCCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTGACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGCGCAATCTAACCATTCAACGGTATGCGGTGATCCCGCTGAGCACCAACTCGGGTCTGATCGGTTGGGTGCCCCACTGTGACACGCTGCACAAGCTGATCCGGGACTATCGCGATTCGAAGAAAACGATGCTAAACATCGAGCATAGGATCATGCTGCGAATGGCACCGGACTACGACCATCTCACGGTGATGCAGAAGGTGGAGGTGTTTGAGCATGCGCTTGA ] [+] EMBL BM601837 [ ccgGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGCGCAATCTAACCATTCAACGGTATGCGGTGATCCCGCTGAGCACCAACTCGGGTCTGATCGGTTGGGTGCCCCACTGTGACACGCTGCACAAGCTGATCCGGGACTATCGCGATTCGAAGAAAACGATGCTAAACATCGAGCATAGGATCATGCTGCGAATGGCACCGGACTACGACCATCTCACGGTGATGCAGAAGGTGGAGGTGTTTGAGCATGCGCTTGATCAAACGAAAGGAGACGATCTGGCGAAGCTGCTCTGGCTGAAAAGCCCTTCGTCGGAGCAGTGGTTTGATCGGCGCACGAACTACATCCGCTCCCTTGCGGTCATGTCGATGGTGGGCTACATCTTGGGTCTCGGCGATCGCCATCCTTCCAATCTGATGCTGGATAGGTTGAGTGGAAAAATTCTTCACATCGATTTCGGCGATTGCTTCGAGGTTGCAATGACGCGAGAAAAGTTCCCGGAGAAAATACCCTTCCGCTTGAC ] [+] EMBL BX617935 [ CCAATCTGATGCTGGATAGGTTGAGTGGAAAAATTCTTCACATCGATTTCGGCGATTGCTTCGAGGTTGCAATGACGCGAGAAAAGTTCCCGGAGAAAATACCCTTCCGCTTGACGCGCATGCTGATCAACGCGATGGAGGTGACCGGCATCGAAGGAACGTATCGGCGCACGTGCGAGAGCGTAATGAACGTGCTGCGCCGTAACAAGGACAGTCTTATGGCGGTACTGGAAGCGTTCGTGTACGATCCGCTGCTCAACTGGCGCCTGCTAGATTCGGACCGATTGCGTCGT TCAAAGAACGCCGGTGACATGGACAGCGTGTCGGGCAGCATGCACGAAGACTCTCTGCTGAGCTACAATGCCAGACGCGATGCTCGGTTGAATGAGCTGAATGCAACGACGGGACCGGCCGCCGGAGGTCAACCGTCG ] [+] EMBL BX466312 [ cAGA TCGG CCGA GGGTTTTATCAAAGAACGCCGGT ACATGGACAGCGTGTCGGGCAGCATGCACGAAGACTCTCTGCTGAGCTACAATGCCAGACGCGATGCTCGGTTGAATGAGCTGAATGCAACGACGGGACCGGCCGCCGGAGGTCAACCGTCGGCTACCGTGAATGTTCCTTCCGGTGGTACGACGGGCGCCATTCCCGTACCGAGCGCTTCCGGTGCTGCTGTGCCGCCAGGAGGTGATGCGCCCGATGGCAACTACCCCGCGATGCAGAATCCCGTCGACGTAACCAATAAGAAGGCACGTGCAATTGTCGATCGAGTGAAGGACAAGCTGACCGGCAAAGATTTCGGCAAAGCAGAACCAGTGGCCGTCAATAGACAGATCGACCTGCTGATCCAGCAGGCAACCAGGCAACGAAAATCTGTGCCAGTGCTATATCGGCTGGTGTCCGTTTTGGTAAAGGAGCTTTGGTTGGTGTGTGGGTTTGAACATGTTGTTGCCTGCTTGCAATGCTTTTCTACACGTGTGCGCGTCTACGCTGCTAGCACCATCGTCATAAAGTATGTCGTGCCTGTATTGTACCGTTTGTATTGGTAGACATACTTTGGTNTCCCCATGGGGAATTACTGTTGGAAGTGTGTATTGCCCNCGGATATATTCGATGGATTTNGGTTATGACCGTTGACTGGTTTAAGCNGTTCAGCGTTNATAACNGCTTCATTGNGTATTACANNNGAATTTCCAA] consensusID : consensus_6320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [GAATCCCCCCGAGGTTAACATTATAAGAACTCTAAAAATACGCGAGATTTGAATCAAGCATGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCCCTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTCCCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTGACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGGCAATCTAACCATTCAACGGTTATGCGGTGATCCCGCTGAGCACCAAACTCGGGTCTGATCGGGTTGGGTGCCCACTGTGACAAGCTTGACAAAGCTGGATCCGGGACTATCGGCGGATTCGAAAAGAAAAAACCGAAATGGCTAAAACCATTCGGANGCATTAGGAATCCCTTGCNTGGCGAANTGGGCACCCGGACGTACAGAACCCATCCTCACGGTGAATGCCACGAAAGGTGGACAGNGTTTTGANCAATGCCGCTGATTACCACGACCAACAGGAGAACGAACTGGGCGAAGTCGGTCTCGCGCNGACAAAAGCCCTTCGCTCNTGCACGAGNGTTTGANCGGGCAGGANCGAT] [+] EMBL AL932318 [GAATCCCCCCGAGGTTAACATTATAAGAACTCTAAAAATACGCGAGATTTGAATCAAGCATGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCCCTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTCCCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTGACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGGCAATCTAACCATTCAACGGTTATGCGGTGATCCCGCTGAGCACCAAACTCGGGTCTGATCGGGTTGGGTGCCCACTGTGACAAGCTTGACAAAGCTGGATCCGGGACTATCGGCGGATTCGAAAAGAAAAAACCGAAATGGCTAAAACCATTCGGANGCATTAGGAATCCCTTGCNTGGCGAANTGGGCACCCGGACGTACAGAACCCATCCTCACGGTGAATGCCACGAAAGGTGGACAGNGTTTTGANCAATGCCGCTGATTACCACGACCAACAGGAGAACGAACTGGGCGAAGTCGGTCTCGCGCNGACAAAAGCCCTTCGCTCNTGCACGAGNGTTTGANCGGGCAGGANCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6320#0 -----------------------------------------------------TCAAGCA 7 consensus_6320#1 GAATCCCCCCGAGGTTAACATTATAAGAACTCTAAAAATACGCGAGATTTGAATCAAGCA 60 ******* consensus_6320#0 TGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCC 67 consensus_6320#1 TGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCC 120 ************************************************************ consensus_6320#0 CTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTC 127 consensus_6320#1 CTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTC 180 ************************************************************ consensus_6320#0 CCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTG 187 consensus_6320#1 CCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTG 240 ************************************************************ consensus_6320#0 ACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAA 247 consensus_6320#1 ACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAA 300 ************************************************************ consensus_6320#0 AACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAG 307 consensus_6320#1 AACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAG 360 ************************************************************ consensus_6320#0 CTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGCGCAATCTA 367 consensus_6320#1 CTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGG-GCAATCTA 419 *************************************************** ******** consensus_6320#0 ACCATTCAACGGT-ATGCGGTGATCCCGCTGAGCACCAA-CTCGGGTCTGATCGG-TTGG 424 consensus_6320#1 ACCATTCAACGGTTATGCGGTGATCCCGCTGAGCACCAAACTCGGGTCTGATCGGGTTGG 479 ************* ************************* *************** **** consensus_6320#0 GTGCCCCACTGTGACACGCTGCACAA-GCTG-ATCCGGGACTATCGC--GATTCGAAGAA 480 consensus_6320#1 GTGCCC-ACTGTGACAAGCTTGACAAAGCTGGATCCGGGACTATCGGCGGATTCGAAAAG 538 ****** ********* *** **** **** ************** ******** * consensus_6320#0 AACGATGCTAAACATCGAGCATAGGATCATGCTGCGAATGGCACCGGACTACGACCATCT 540 consensus_6320#1 AAAAAACCGAAATGGC-----TAAAACCATTC---GGANGCATTAGGAAT----CCCTTG 586 ** * * *** * ** * *** * * * * *** * ** * consensus_6320#0 CACGGTGATGCAGA-AGGTGGAGGTGTTTGAGCATGCGCTTGATCAAACGAAAGGAGACG 599 consensus_6320#1 CNTGGCGAANTGGGCACCCGGACGTAC---AGAACCCATCC--TCACGGTGAATGCCACG 641 * ** ** * * *** ** ** * * *** ** * *** consensus_6320#0 ATCTGGCGAAGCTGCTCTGGCTGAAAAGCCCTTCGTCGGAGCAGTGGTTTGATCGGCGCA 659 consensus_6320#1 AAAGGTGGACAGNGTTTTGANC--AATGCCGCTGATTACCACGACCAACAGGAGAACGAA 699 * * ** * * ** ** *** * * * * ** * consensus_6320#0 CGAACTACATCCGCTCCCTTGCGGTCATGTCGATGGTGGGCTACATCTTGGGTCTCGGCG 719 consensus_6320#1 CTGGGCGAAGTCGGTCTCGCGCNGACAAAAGCCCTTCGCTCNTGCACGAGNGTTTGANCG 759 * * ** ** * ** * ** * * * * ** * ** consensus_6320#0 ATCGCCATCCTTCCAATCTGATGCTGGATAGGTTGAGTGGAAAAATTCTTCACATCGATT 779 consensus_6320#1 GGCAGGANCGAT------------------------------------------------ 771 * * * * consensus_6320#0 TCGGCGATTGCTTCGAGGTTGCAATGACGCGAGAAAAGTTCCCGGAGAAAATACCCTTCC 839 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCTTGACGCGCATGCTGATCAACGCGATGGAGGTGACCGGCATCGAAGGAACGTATCGGC 899 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCACGTGCGAGAGCGTAATGAACGTGCTGCGCCGTAACAAGGACAGTCTTATGGCGGTAC 959 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 TGGAAGCGTTCGTGTACGATCCGCTGCTCAACTGGCGCCTGCTAGATTCGGACCGATTGC 1019 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GTCGTTCAAAGAACGCCGGTGACATGGACAGCGTGTCGGGCAGCATGCACGAAGACTCTC 1079 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 TGCTGAGCTACAATGCCAGACGCGATGCTCGGTTGAATGAGCTGAATGCAACGACGGGAC 1139 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 CGGCCGCCGGAGGTCAACCGTCGGCTACCGTGAATGTTCCTTCCGGTGGTACGACGGGCG 1199 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 CCATTCCCGTACCGAGCGCTTCCGGTGCTGCTGTGCCGCCAGGAGGTGATGCGCCCGATG 1259 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCAACTACCCCGCGATGCAGAATCCCGTCGACGTAACCAATAAGAAGGCACGTGCAATTG 1319 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 TCGATCGAGTGAAGGACAAGCTGACCGGCAAAGATTTCGGCAAAGCAGAACCAGTGGCCG 1379 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 TCAATAGACAGATCGACCTGCTGATCCAGCAGGCAACCAGGCAACGAAAATCTGTGCCAG 1439 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 TGCTATATCGGCTGGTGTCCGTTTTGGTAAAGGAGCTTTGGTTGGTGTGTGGGTTTGAAC 1499 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 ATGTTGTTGCCTGCTTGCAATGCTTTTCTACACGTGTGCGCGTCTACGCTGCTAGCACCA 1559 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 TCGTCATAAAGTATGTCGTGCCTGTATTGTACCGTTTGTATTGGTAGACATACTTTGGTN 1619 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 TCCCCATGGGGAATTACTGTTGGAAGTGTGTATTGCCCNCGGATATATTCGATGGATTTN 1679 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GGTTATGACCGTTGACTGGTTTAAGCNGTTCAGCGTTNATAACNGCTTCATTGNGTATTA 1739 consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 CANNNGAATTTCCAA 1754 consensus_6320#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||