These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [ATCGCCAGGGTTAACGAAGNGAGTACGGAAGATTGAGGTGCACCTGNTTGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTGCACGGCTCATACCCAGTGTTCGGTGCAGATACCTGCCAGCTGGGAAACCTGGCAAACAGAAGGTAGTGGGGAAACCAATTCCCAAGATTACCCTGGATACCTGCCAGGGGTGATATCGTGCATATTCATCTTTGATGTGCGCGTGTNTACGGCTCGCACTCTTTATGCGAACTGGATCAGTCGATACTGTGGACGAAGCGTTGGCGAATCATTGAGGCGACAGCAGGCACTTGGCGTCAAATCCAGACTCACTTGTCAAGAGTACTGCCCGACAACCGGACACAACACCGTATACGCCGGTGCGGCGACCCTAAATATGCGCTGCAAAGGTTCGGCAACCGGCGCGCAGNCNTAAGCTGTGGGTCACACTGACGGGAAAAGAAAGCGGCAGGCCAAAAGGAAGCNCGTAACCCAAAACGAGAACAGTGCAGGCGTAGAGCCTNGACTCACGGTTTAAAAAAACCCAGGCNTTGNANACCCGGGTCCTGGTGAGACTGACTTGACGGAACGACACAGGCAGAAACCCAGGAGCAAAGNCNGTACAAGAACCAACACCGTGGGAAAGCCCAAAGGAAGCTCTGAACGCGAAAGTGGCANAGAGGGCGTGTACAGGAAGCAAGGTCACAAGGAAA] [+] EMBL AL697592 [ATCGCCAGGGTTAACGAAGNGAGTACGGAAGATTGAGGTGCACCTGNTTGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTGCACGGCTCATACCCAGTGTTCGGTGCAGATACCTGCCAGCTGGGAAACCTGGCAAACAGAAGGTAGTGGGGAAACCAATTCCCAAGATTACCCTGGATACCTGCCAGGGGTGATATCGTGCATATTCATCTTTGATGTGCGCGTGTNTACGGCTCGCACTCTTTATGCGAACTGGATCAGTCGATACTGTGGACGAAGCGTTGGCGAATCATTGAGGCGACAGCAGGCACTTGGCGTCAAATCCAGACTCACTTGTCAAGAGTACTGCCCGACAACCGGACACAACACCGTATACGCCGGTGCGGCGACCCTAAATATGCGCTGCAAAGGTTCGGCAACCGGCGCGCAGNCNTAAGCTGTGGGTCACACTGACGGGAAAAGAAAGCGGCAGGCCAAAAGGAAGCNCGTAACCCAAAACGAGAACAGTGCAGGCGTAGAGCCTNGACTCACGGTTTAAAAAAACCCAGGCNTTGNANACCCGGGTCCTGGTGAGACTGACTTGACGGAACGACACAGGCAGAAACCCAGGAGCAAAGNCNGTACAAGAACCAACACCGTGGGAAAGCCCAAAGGAAGCTCTGAACGCGAAAGTGGCANAGAGGGCGTGTACAGGAAGCAAGGTCACAAGGAAA] consensusID : consensus_6332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 504 fasta sequence [TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTGCACGGCTCATCCCAGTGTTCGGTGCAGATACCGCCCAGCGGGAAACCGGCCAAACAGAAGGTAGTGGGGAAACCACTTCCCAAGATTCCCTGGATACCGCAGGGTGATTCGTGCAATTTCATCTTTGATGT] [+] EMBL AGA280668 [TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCACTACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCTCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTG ] [+] EMBL AGA283431 [TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCANAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCCACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGGGCCGCTG ] [+] EMBL AGA280381 [TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATTTTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATC ] [+] EMBL AGA280409 [ TGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTGCACGGCTCATCCCAGTGTTCGGTGCAGATACCGCCCAGCGGGAAACCGGCCAAACAGAAGGTAGTGGGGAAACCACTTCCCAAGATTCCCTGGATACCGCAGGGTGATTCGTGCAATTTCATCTTTGATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6332#0 ATCGCCAGGGTTAACGAAGNGAGTACGGAAGATTGAGGTGCACCTGNTTGAGCTGTCTAC 60 consensus_6332#1 -----------------------------------------------------------T 1 consensus_6332#0 AAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGC-CGCTGCGCTTAACA--A 117 consensus_6332#1 GAAGGCGG--AAAGATGCTGCT---GTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGA 56 ***** * ** * * ***** ** ** * * * ** * ***** * * * consensus_6332#0 TGCCAAGAGTCGACTGCACGGCTCATACCCAGTGTTCGGTGCAGATACCTGCCAGCTGGG 177 consensus_6332#1 TACTGA-ACTTGATCAACGGTCTCGCGGTAAGTGAT-ATTGCCGCGATCCGGGAGGAGTC 114 * * * * * ** * *** **** * *** * * * * ** * consensus_6332#0 AAACCTGGCAAACAGAAGGTAGTGGGGAAACCAATTCCCAAGATTACCCTGGATACCTGC 237 consensus_6332#1 GGAACTGATCAGCAT----CAGCAAGAAGGTGATGCTGCTGGAGCA------ATACGAGC 164 * *** * ** ** * * * * ** * **** ** consensus_6332#0 CAGGGGTGATATCGTGCATATTCATCTTTGATGTGCGCGTGTNTACGGCTCGCACTCTTT 297 consensus_6332#1 GCGGAGTG-----GCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTT 219 ** *** * * * * *** **** *** * * ** * ** consensus_6332#0 AT--GCGAACTGGATCAGTCGATACTGTG----GACGAAGCGTTGGCGAATCATTGAGGC 351 consensus_6332#1 CTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGT 279 * ** * * * **** * ** ******* * ** * ******* consensus_6332#0 GACAGCAGGCACTTGGCGTCAAATCCAGACTCACTTGTCAAGAGTACTGCCCGACAACCG 411 consensus_6332#1 G-CACCTG----CGGGAGCTGTCTACAAAGGC---TGGCAAGGGTACTGCTC--CAGTC- 328 * ** * * ** * * ** * * ** **** ******* * ** * consensus_6332#0 GACACAACACCGTATACGCCGGTGCGGCGACCCTAAATATGCGCTGCAAAGGTTCGGCAA 471 consensus_6332#1 -----AATCCCGGTGGTGCCGCTGCG-----CTTAACAATGC----CAAGAGTCGACTGC 374 ** *** **** **** * *** **** *** ** consensus_6332#0 CCGGCGCGCAGNCNTAAGCTGTGGGTCACACTGACGGGAAAAGAAAGCGGCAGGCCAAAA 531 consensus_6332#1 ACGGCTCATCCCAGTGTTCGGTGCAG-ATACCGCCCAGCGG-GAAACCGGCCAAACAGAA 432 **** * * * *** * ** * * * **** **** ** ** consensus_6332#0 GGAAGCNCGTAACCCAAAACGAGAACAGTGCAGGCGTAGAGCCTNGACTCACGGTTTAAA 591 consensus_6332#1 GGTAGTGGGGAAACCACTTCCC-AAGATTCCCTGGATACCGCAGGG-----TGATTCGTG 486 ** ** * ** *** * ** * * * * ** ** * * ** consensus_6332#0 AAAACCCAGGCNTTGNANACCCGGGTCCTGGTGAGACTGACTTGACGGAACGACACAGGC 651 consensus_6332#1 CAATTTCATCTTTGATGT------------------------------------------ 504 ** ** * consensus_6332#0 AGAAACCCAGGAGCAAAGNCNGTACAAGAACCAACACCGTGGGAAAGCCCAAAGGAAGCT 711 consensus_6332#1 ------------------------------------------------------------ consensus_6332#0 CTGAACGCGAAAGTGGCANAGAGGGCGTGTACAGGAAGCAAGGTCACAAGGAAA 765 consensus_6332#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||