cluster # 6336

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Anopheles gambiae
cluster # 6336 cluster # 6336 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6336#0 length = 861 sequences # 4

consensus_6336#1 length = 507 sequences # 1

consensusID : consensus_6336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 861
fasta sequence

                              [TGATAAGTATAGGACAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAATTTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAAAGTAGCCGCGAAAAACTCCTTGTCCGAAGAG-TCGTGTTTTGAGTTTGGGGTTTCCTTTTCGCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAAGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCCGAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAGGAGGCATCACATCA-GGAGGCCAAACAGAATTATTTTAGTTTCA-TTTTCCACTGCACAACACAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAATGGGGGGGGGGGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAACTCNATAATCGGAAAAGTGCT]

[+] EMBL BX628808             [TGATAAGTATAGGACAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAATTTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAAAGTAGCCGCGAAAAACTCCTTGTCCGAAGAGTTCGTGTTTTGAGTTTGGGGTTTCCTTTTCGCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAAGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCCGAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAGGAGGCATCACATCA GGAGGCCAAACAGAATTATTTTAGTTTCA TTTTCCACTGCACAACACAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAAT                                                                                   ]
[+] EMBL BX628741             [              CAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAATTTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAAAGTAGCCGCGAAAAACTCCTTGTCCGAAGAG TCGTGTTTTGAGTTTGGGGTTTCCTTTTCGCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAAGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCCGAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAGGAGGCATCACATCA GGAGGCCAAACAGAATTATTTTAGTTTCA TTTTCCACTGCACAACACAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAATGGGGGGGG                                                                           ]
[+] EMBL BX620648             [                                                                 TTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAAAGTAGCCGCGAAAAACTCCTTGTCCGAAGAG TCGTGTTTTGAGTTTGGGGTTTCCTTTTCGCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAAGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCCGAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAANGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAGGAGGCATCACATCN GGAGGCCAAACAGAATTATTTTAGTTTCATTTTTCCAC                                                                                                                                                      ]
[+] EMBL BX625560             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCNATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAANAGAGGAGGCATCACATCATNGAGGCCAAACAGAATTATTTTAGTTTCA TTTTCCNCTGCACAACACGACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTANTTAGTTTATCNAATGGGGGGGGGGGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAACTCNATAATCGGAAAAGTGCT]




>consensus_6336#0
TGATAAGTATAGGACAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAAT
TTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAA
AGTAGCCGCGAAAAACTCCTTGTCCGAAGAGTCGTGTTTTGAGTTTGGGGTTTCCTTTTC
GCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAA
TGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAA
GAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCC
GAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATA
GACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAA
AACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTA
AGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGT
TCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAG
GAGGCATCACATCAGGAGGCCAAACAGAATTATTTTAGTTTCATTTTCCACTGCACAACA
CAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAATGG
GGGGGGGGGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAA
CTCNATAATCGGAAAAGTGCT

consensusID : consensus_6336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [CCGCACAACACAACCATCAACCAAACGTATCAATGAATCAGTTGACAACAGTAATTAGTTCATCGAATGGGGAGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAACTCAATAATTGGAAAAGTGCTCTACCGTGTGGAGAACAAACGCATGTAAACGCATGTATTAAGTTCTATCACACGAAAGCTGAGTCATCATGTCGGACATAGTTCGAACAACAAGCGCGGGTATAGTCTTCGTTTTTCCCCCCCATTTATAACAACTCTACTTTTTAGTCGATTGTTTTCCACAATACAGATGATATACAACCAACTTCCAAAGTCGCTTGGATTCCAATTTTGTGTAAGCTTAGGAAAACCACTTTCGCGTTTTTTTTCTGTTTATTTCCATCCATCTGTAACTCATTGTAAAGAGGAAAAGTAAGGAATGAGAATAGTATTAAACGAAACGAAACGTAAAATCGGGACTGCACTATGGGAAATGAATAAT]

[+] EMBL BM652541             [CCGCACAACACAACCATCAACCAAACGTATCAATGAATCAGTTGACAACAGTAATTAGTTCATCGAATGGGGAGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAACTCAATAATTGGAAAAGTGCTCTACCGTGTGGAGAACAAACGCATGTAAACGCATGTATTAAGTTCTATCACACGAAAGCTGAGTCATCATGTCGGACATAGTTCGAACAACAAGCGCGGGTATAGTCTTCGTTTTTCCCCCCCATTTATAACAACTCTACTTTTTAGTCGATTGTTTTCCACAATACAGATGATATACAACCAACTTCCAAAGTCGCTTGGATTCCAATTTTGTGTAAGCTTAGGAAAACCACTTTCGCGTTTTTTTTCTGTTTATTTCCATCCATCTGTAACTCATTGTAAAGAGGAAAAGTAAGGAATGAGAATAGTATTAAACGAAACGAAACGTAAAATCGGGACTGCACTATGGGAAATGAATAAT]




>consensus_6336#1
CCGCACAACACAACCATCAACCAAACGTATCAATGAATCAGTTGACAACAGTAATTAGTT
CATCGAATGGGGAGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTG
TTTAACTCAATAATTGGAAAAGTGCTCTACCGTGTGGAGAACAAACGCATGTAAACGCAT
GTATTAAGTTCTATCACACGAAAGCTGAGTCATCATGTCGGACATAGTTCGAACAACAAG
CGCGGGTATAGTCTTCGTTTTTCCCCCCCATTTATAACAACTCTACTTTTTAGTCGATTG
TTTTCCACAATACAGATGATATACAACCAACTTCCAAAGTCGCTTGGATTCCAATTTTGT
GTAAGCTTAGGAAAACCACTTTCGCGTTTTTTTTCTGTTTATTTCCATCCATCTGTAACT
CATTGTAAAGAGGAAAAGTAAGGAATGAGAATAGTATTAAACGAAACGAAACGTAAAATC
GGGACTGCACTATGGGAAATGAATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6336#0      TGATAAGTATAGGACAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAAT 60
consensus_6336#1      ------------------------------------------------------------
                                                                                  

consensus_6336#0      TTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAA 120
consensus_6336#1      -----CCGCACAACAC--AACCAT-------CAACCAAACGTATCAATGAATCAGTTGAC 46
                               * *****  **** *       *  ***   ** * * ** * **    * 

consensus_6336#0      AGTAGCCGCGAAAAACTCCTTGTCCGAAGAGTCGTGTTTTGAGTTTGGGGTTTCCTTTTC 180
consensus_6336#1      AACA---GTAATTAGTTCATCGAATGGGGAG--GTACATCACGTCTCTTTCTTCCGCTAC 101
                      *  *   *  *  *  ** * *   *  ***  **   *   ** *     ****  * *

consensus_6336#0      GCAAAAAATCATC-ATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGA 239
consensus_6336#1      ACTTACTTGCTTCCGTTTGTTTAACTCAATAATTGGAAAAGTGCTCTACCGTGTGG-AGA 160
                       *  *    * **  **   **   * **  *       *       ** *  *    **

consensus_6336#0      ATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAA 299
consensus_6336#1      ACAAACGCATGTAAACGCATGTATTA--AGTTCTATCACA--CGAAAGCTGAGTCATCAT 216
                      *     ** ** ***    **** **  ***  **   **   ****  * *****  * 

consensus_6336#0      AGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGC 359
consensus_6336#1      ---------GTCGGACATAGTTCGAACAACAAGCGCGGGTA--TAGTCTTCGTTTTTCCC 265
                               *** **  *  ** **  **       *  **    * *   *     * *

consensus_6336#0      CGAACAAGCAGAA-AACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGA 418
consensus_6336#1      CCC-CATTTATAACAACTCTACTTTTTAGTCGATTGTTTTCCACA--------ATACAGA 316
                      *   **   * ** ***  ** * *  ***   * * *   ***         * *****

consensus_6336#0      TAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCG 478
consensus_6336#1      T-GATATAC---AACCAACTTCCAAAGTCGCT---TGGATTCCAATTTTGTGTAAGCTTA 369
                      * ** * **   *    *    *****  * *   *** *    *  * * * **     

consensus_6336#0      AAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAG 538
consensus_6336#1      GGAAAACCACTTTCG-CGTTTTTTTTCTGTTTATTT--CCATCCATCTGTAACTCATTGT 426
                        ** **  ** *   ***  ***   *  *  ***   **   ** *  *    **   

consensus_6336#0      TAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCC 598
consensus_6336#1      AAAGAGGAAAAGTAAGGA-ATGAGAATAGTATTAAACGAAACGAAACGTAAAA------- 478
                       ***   *** ***   *  ** *   ** *    *  *    ***** * *        

consensus_6336#0      GTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAG 658
consensus_6336#1      --TCGGGACTGCACTATGGGAAATGAATAAT----------------------------- 507
                        **  *  *  *   ** ** * * ****                              

consensus_6336#0      AGGAGGCATCACATCAGGAGGCCAAACAGAATTATTTTAGTTTCATTTTCCACTGCACAA 718
consensus_6336#1      ------------------------------------------------------------
                                                                                  

consensus_6336#0      CACAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAAT 778
consensus_6336#1      ------------------------------------------------------------
                                                                                  

consensus_6336#0      GGGGGGGGGGGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTT 838
consensus_6336#1      ------------------------------------------------------------
                                                                                  

consensus_6336#0      AACTCNATAATCGGAAAAGTGCT 861
consensus_6336#1      -----------------------