These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence [GCAGAATTGCCCGAGGTTACTTAGTAAACATCTAAATTTTAGTCCCGTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGACTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCTGTCCTGTCCTGGCTGGTCATGGAGGTAGCGGCGGCGGTGGCTGGCTACAGCACGGTGGTGGCGGTGGCTACAGCAGGGGCGGTACTCGAGCGGCTGGCGTGATAACATCCGAGACTGGCAGTGNAGTGCTGAGAAGGTTAGGCTAACGGCCTGGCACNAGACGTTCAGAGCACAGCTTATCTTACCTGAGACTACGATCATATACGTACAGNTATCTTCAGAAGCCGNGCCAGGCTGTGCTGNGCATAACCCAAGAGCCAGTNCACCAGTGAACCGCGCTTGTCCAGAAACACCTTCGCGGCAAAGNGCGCCCTTGAACACAGTTCCGGAATTCACTGCAAGGACCTTGGCCTTGCACACACGGACAACAGTTTCCGCACCCCAAGGAANTTTCCCTTGGCGCATTCCCGGCCTGGCAAGGGCACAAAGGCACCAAGAGTACAGAATNACAGNANCCNCGANATCCAGGNTACCCGANATNACCCGCATATACNNGATCAACCCCNGGGAGGTTGGCGGANAATAACNACCTGGGCAGGAAACGAGGGACTNTAAACCACCCNCCCCGGGACTTACCCACCGNGACCCAAACGCCCGGTAACCCCCCCGGGACNGACTAAACNGCACCTACAAACNCCAGCAGGAAGCANCCACNCCGGGCAGCACGGNNCATCCACCCCCAGCGAGAGCAACCACCCAGNCTCNAAACCCCNCGGGGCACACCCCNCCAAACCCCCNGGGACTCCCCCTATCCCACCAANNAAGACGCCTTCAACACCGACGCACCGAGCTNACCAC] [+] EMBL AL694588 [GCAGAATTGCCCGAGGTTACTTAGTAAACATCTAAATTTTAGTCCCGTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGACTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCTGTCCTGTCCTGGCTGGTCATGGAGGTAGCGGCGGCGGTGGCTGGCTACAGCACGGTGGTGGCGGTGGCTACAGCAGGGGCGGTACTCGAGCGGCTGGCGTGATAACATCCGAGACTGGCAGTGNAGTGCTGAGAAGGTTAGGCTAACGGCCTGGCACNAGACGTTCAGAGCACAGCTTATCTTACCTGAGACTACGATCATATACGTACAGNTATCTTCAGAAGCCGNGCCAGGCTGTGCTGNGCATAACCCAAGAGCCAGTNCACCAGTGAACCGCGCTTGTCCAGAAACACCTTCGCGGCAAAGNGCGCCCTTGAACACAGTTCCGGAATTCACTGCAAGGACCTTGGCCTTGCACACACGGACAACAGTTTCCGCACCCCAAGGAANTTTCCCTTGGCGCATTCCCGGCCTGGCAAGGGCACAAAGGCACCAAGAGTACAGAATNACAGNANCCNCGANATCCAGGNTACCCGANATNACCCGCATATACNNGATCAACCCCNGGGAGGTTGGCGGANAATAACNACCTGGGCAGGAAACGAGGGACTNTAAACCACCCNCCCCGGGACTTACCCACCGNGACCCAAACGCCCGGTAACCCCCCCGGGACNGACTAAACNGCACCTACAAACNCCAGCAGGAAGCANCCACNCCGGGCAGCACGGNNCATCCACCCCCAGCGAGAGCAACCACCCAGNCTCNAAACCCCNCGGGGCACACCCCNCCAAACCCCCNGGGACTCCCCCTATCCCACCAANNAAGACGCCTTCAACACCGACGCACCGAGCTNACCAC] consensusID : consensus_6337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [GCCAAGAATCGCGCACGAGGCTCGCTTCAGTAAACATCTAAATTTTAGTCCCCGTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGCTGAACGTCGATCCGCAGCTGCTGAACGAAATTCGCCAGATTCTGCTCCGCGAGGAAAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTTGGAGGCTACCCGTCCGCACCGTCCGGTAGCTACGGCCCGCCGTCCGGTTCGTACGGCCCACCGTCCTCCAGCTACGGCGTCCCGTCCGGTGGCCACCGTGTCGTCGGCATCGACCTCGAGGGCGTCAAGCAAGCCATCCAGGTCGCCCAGTTCCTGCAGACTTCGTCCGCTTCGGTCCGTCCGGTTCGTACGGTGCGCCGTCCGTTGCCGTCGGGTCGTACGGTGCCCGTCGGCCGTTCCGGGTTCGGTACGGTGCGCATGGCCATCAGACTANGGGCTCGTNTAGATCTCGGTAACACGGATAATGGGNATACANATGCAACGNAAATCAATNGCGCG] [+] EMBL BX467412 [GCCAAGAATCGCGCACGAGGCTCGCTTCAGTAAACATCTAAATTTTAGTCCCCGTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGCTGAACGTCGATCCGCAGCTGCTGAACGAAATTCGCCAGATTCTGCTCCGCGAGGAAAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTTGGAGGCTACCCGTCCGCACCGTCCGGTAGCTACGGCCCGCCGTCCGGTTCGTACGGCCCACCGTCCTCCAGCTACGGCGTCCCGTCCGGTGGCCACCGTGTCGTCGGCATCGACCTCGAGGGCGTCAAGCAAGCCATCCAGGTCGCCCAGTTCCTGCAGACTTCGTCCGCTTCGGTCCGTCCGGTTCGTACGGTGCGCCGTCCGTTGCCGTCGGGTCGTACGGTGCCCGTCGGCCGTTCCGGGTTCGGTACGGTGCGCATGGCCATCAGACTANGGGCTCGTNTAGATCTCGGTAACACGGATAATGGGNATACANATGCAACGNAAATCAATNGCGCG] consensusID : consensus_6337#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence [ATCGCCCGAGGNTCAGTAACATCTAAATTTTAGTCCCCGTGGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCA-GGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGCTGAACGTCGATCCGCAGCTGCTGAACGAAATTCGCCAGATTCTGCTCCGCGAGNNNAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTTGGAGGCTACCCGTCCGCACCGTNCNGTAGCTAC] [+] EMBL AL934543 [ATCGCCCGAGGNTCAGTAACATCTAAATTTTAGTCCCCGTGGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCA GGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGC ] [+] EMBL BX624268 [ AACATCTAAATTTTAGTCCCCGNTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGCTGAACGTCGATCCGCAGCTGCTGAACGAAATTCGCCAGATTCTGCTCCGCGAGNNNAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTTGGAGGCTACCCGTCCGCACCGTNCNGTAGCTAC] consensusID : consensus_6337#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CCGCCCACGCGTCCGGTCACACACTGTAGCTCTGAGAGTAAAAGTGCGTCCGAAAATGTCGCACCACCACAAGCAGACGTCAACACACACACGCGGCCAATCCTTCACAATTGCTCGGAGCATTAATTGGAGCAAAAGCTAACGATTTTTCCTTCTCGGTTTTCACAGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGAACCTCCGAAGGTCTGAACGTCGATCCGCAGCTGCTGAACGAGATTCGCCAGATTC] [+] EMBL BM635486 [CCGCCCACGCGTCCGGTCACACACTGTAGCTCTGAGAGTAAAAGTGCGTCCGAAAATGTCGCACCACCACAAGCAGACGTCAACACACACACGCGGCCAATCCTTCACAATTGCTCGGAGCATTAATTGGAGCAAAAGCTAACGATTTTTCCTTCTCGGTTTTCACAGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGAACCTCCGAAGGTCTGAACGTCGATCCGCAGCTGCTGAACGAGATTCGCCAGATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6337#1 -----------------------------------GCCAAGAATCGCGCACGAGGCTCGC 25 consensus_6337#2 --------------------------------------------ATCGCCCGAGGNTCAG 16 consensus_6337#3 CCGCCCACGCGTCCGGTCACACACTGTAGCTCTGAGAGTAAAAGTGCGTCCGAAAATGTC 60 consensus_6337#0 ---------------------------------------GCAGAATTGCCCGAGGTTACT 21 * *** * consensus_6337#1 TTCAGTAAACATCTAAATTTTAGTCCCC----GTG-TTTTTTCTTC-----TTCTCCATC 75 consensus_6337#2 T------AACATCTAAATTTTAGTCCCC----GTGGTTTTTTCTTC-----TTCTCCATC 61 consensus_6337#3 GCACCACCACAAGCAGACGTCAACACACACACGCGGCCAATCCTTCACAATTGCTCGGAG 120 consensus_6337#0 T--AGTAAACATCTAAATTTTAGTCCC-----GTG-TTTTTTCTTC-----TTCTCCATC 68 *** * * * * * * * * **** * *** consensus_6337#1 CCCTACCTTAAGTGAAA-TGAACAGCTTTGCCGT-------------GTTTTTGGCGTTC 121 consensus_6337#2 CCCTACCTTAAGTGAAA-TGAACAGCTTTGCCGT-------------GTTTTTGGCGTTC 107 consensus_6337#3 CATTAATTGGAGCAAAAGCTAACGATTTTTCCTTCTCGGTTTTCACAGTTTTTGGCGTTC 180 consensus_6337#0 CCCTACCTTAAGTGAAA-TGAACAGCTTTGCCGT-------------GTTTTTGGCGTTC 114 * ** * ** *** *** *** ** * ************* consensus_6337#1 GCCTCG-CTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACC-GTC 179 consensus_6337#2 GCCTCG-CTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACC-GTC 165 consensus_6337#3 GCCTCG-CTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACC-GTC 238 consensus_6337#0 GCCTCGACTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCTGTC 174 ****** ************************************************* *** consensus_6337#1 C-GTCCGG--CGGTCATGGAGGTAGCGGCGGCGGTGGC-GGCTACAGCCACGGTGGTGGC 235 consensus_6337#2 C-GTCCGG--CGGTCATGGAGGTAGCGGCGGCGGTGGC-GGCTACAGCCACGGTGGTGGC 221 consensus_6337#3 C-GTCCGG--CGGTCATGGAGGTAGCGGCGGCGGTGGC-GGCTACAGCCACGGTGGTGGC 294 consensus_6337#0 CTGTCCTGGCTGGTCATGGAGGTAGCGGCGGCGGTGGCTGGCTACAGC-ACGGTGGTGGC 233 * **** * *************************** ********* *********** consensus_6337#1 GGTGGCTACAGCCAGGGCGGCTACTCGAGCGGC-GGCG----GCTACTCGAG-----CGG 285 consensus_6337#2 GGTGGCTACAGCCAGG-CGGCTACTCGAGCGGC-GGCG----GCTACTCGAG-----CGG 270 consensus_6337#3 GGTGGCTACAGCCAGGGCGGCTACTCGAGCGGC-GGCG----GCTACTCGAG-----CGG 344 consensus_6337#0 GGTGGCTACAGCAGGGGCGG-TACTCGAGCGGCTGGCGTGATAACATCCGAGACTGGCAG 292 ************ ** *** ************ **** * **** * * consensus_6337#1 AGGAG-GCGGCGGTGGCTACGCCGCCAGCGT--CGGCAGCTTCTC------CGGCTCGTC 336 consensus_6337#2 AGGAG-GCGGCGGTGGCTACGCCGCCAGCGT--CGGCAGCTTCTC------CGGCTCGTC 321 consensus_6337#3 AGGAG-GCGGCGGTGGCTACGCCGCCAGCGT--CGGCAGCTTCTC------CGGCTCGTC 395 consensus_6337#0 TGNAGTGCTGAGAAGGTTAGGCTAACGGCCTGGCACNAGACGTTCAGAGCACAGCTTATC 352 * ** ** * * ** ** ** * ** * * ** ** * *** ** consensus_6337#1 TTCGTCGT--TCTCGAGCGGCGGCG-GCGGCTACC-----AGGCCGTCCCGGCCGGTGTC 388 consensus_6337#2 TTCGTCGT--TCTCGAGCGGCGGCG-GCGGCTACC-----AGGCCGTCCCGGCCGGTGTC 373 consensus_6337#3 TTCGTCGT--TCTCGAGCGGCGGCG-GCGGCTACC-----AGGCCGTCCCGGCCGGTGTC 447 consensus_6337#0 TTACCTGAGACTACGATCATATACGTACAGNTATCTTCAGAAGCCGNGCCAGGCTGTGCT 412 ** * *** * ** * * ** * * **** ** * * *** consensus_6337#1 CAG-A-CCTCCGAAGGGCTGAACGTCGAT---CCGCAGCTGCTGAACGAAA--TTCGC-- 439 consensus_6337#2 CAG-A-CCTCCGAAGGGCTGAACGTCGAT---CCGCAGCTGCTGAACGAAA--TTCGC-- 424 consensus_6337#3 CAG-AACCTCCGAAGGTCTGAACGTCGAT---CCGCAGCTGCTGAACGAGA--TTCGC-- 499 consensus_6337#0 GNGCATAACCCAAGAGCCAGTNCACCAGTGAACCGCGCTTGTCCAGAAACACCTTCGCGG 472 * * ** * * * * * * * **** ** * * * ***** consensus_6337#1 CAGATTCTGCTCCGCGAGGAAAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTT 499 consensus_6337#2 CAGATTCTGCTCCGCGAGNNNAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTT 484 consensus_6337#3 CAGATTC----------------------------------------------------- 506 consensus_6337#0 CAAAGNGCGCCCTTGAACACAGTTCCGGAATTCACTGCAAGGACCTTGGCCT-TGCACAC 531 ** * consensus_6337#1 GGAGGCTACCCGTCCGCACCGTCCGGTAGCTACGGCCCGCCGTCCGGTTCGTACGGCCCA 559 consensus_6337#2 GGAGGCTACCCGTCCGCACCGTNCNGTAGCTAC--------------------------- 517 consensus_6337#3 ------------------------------------------------------------ consensus_6337#0 ACGGACAACAGTTTCCGCACCCCAAGGAANTTTCCCTTGGCGCATTCCCGGCCTGGCAAG 591 consensus_6337#1 CCGTCCTCCAGCTACGGCGTCCCGTCCGGTGGCCACCGTGTCGTCGGCATCGACCTCGAG 619 consensus_6337#2 ------------------------------------------------------------ consensus_6337#3 ------------------------------------------------------------ consensus_6337#0 GGCACAAAGGCACCAAGAGTACAGAATNACAGNANCCNCGANATCCAGGNTACCCGANAT 651 consensus_6337#1 GGCGTCAAGCAAGCCATCCAGGTCGCCCAGTTCCTGCAGACTTCGTCCGCTTCGGTCCGT 679 consensus_6337#2 ------------------------------------------------------------ consensus_6337#3 ------------------------------------------------------------ consensus_6337#0 NACCCGCATATACNNGATCAACCCCNGGGAGGTTGGCGGANAATAACNACCTGGGCAGGA 711 consensus_6337#1 CCGGTTCGTACGGTGCGCCGTCCGTTGCCGTCGGGTCGTACGGTGCCCGTCGGCCGTTCC 739 consensus_6337#2 ------------------------------------------------------------ consensus_6337#3 ------------------------------------------------------------ consensus_6337#0 AACGAGGGACTNTAAACCACCCNCCCCGGGACTTACCCACCGNGACCCAAACGCCCGGTA 771 consensus_6337#1 GGGTTCGGTACGGTGCGCATGGCCATCAGACTANGGGCTCGTNTAGATCTCGGTAACACG 799 consensus_6337#2 ------------------------------------------------------------ consensus_6337#3 ------------------------------------------------------------ consensus_6337#0 ACCCCCCCGGGACNGACTAAACNGCACCTACAAACNCCAGCAGGAAGCANCCACNCCGGG 831 consensus_6337#1 GATAATGGGNATACANATGCAACGNAAATCAATNGCGCG--------------------- 838 consensus_6337#2 ------------------------------------------------------------ consensus_6337#3 ------------------------------------------------------------ consensus_6337#0 CAGCACGGNNCATCCACCCCCAGCGAGAGCAACCACCCAGNCTCNAAACCCCNCGGGGCA 891 consensus_6337#1 ------------------------------------------------------------ consensus_6337#2 ------------------------------------------------------------ consensus_6337#3 ------------------------------------------------------------ consensus_6337#0 CACCCCNCCAAACCCCCNGGGACTCCCCCTATCCCACCAANNAAGACGCCTTCAACACCG 951 consensus_6337#1 ------------------ consensus_6337#2 ------------------ consensus_6337#3 ------------------ consensus_6337#0 ACGCACCGAGCTNACCAC 969 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||