These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1258 fasta sequence [CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCGTCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCGATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCTCCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACTATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCGGACTGTCGGCATACCCAAGGAAACT] [+] EMBL BM597014 [CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCGTCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAA ] [+] EMBL BM630124 [ ccgGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAGGCGCAAAAGAAGCGTCCGG ] [+] EMBL BM624502 [ ccgAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCT ] [+] EMBL BM631012 [ ccgCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCGATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCTCCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACTATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCGGACTGTCGGCATACCCAAGGAAACT] consensusID : consensus_6342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAAAAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAACGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCACTGATCCG] [+] EMBL BM649069 [CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAAAAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAACGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCACTGATCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6342#0 CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAG 60 consensus_6342#1 -CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAG 59 * ********************************************************* consensus_6342#0 TTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGG------------ 108 consensus_6342#1 TTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAA 119 ************************************************ consensus_6342#0 ------------------------------------------------------------ consensus_6342#1 AAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAA 179 consensus_6342#0 ---------------GAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCG 153 consensus_6342#1 CGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCG 239 ********************************************* consensus_6342#0 CGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACG 213 consensus_6342#1 CGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACG 299 ************************************************************ consensus_6342#0 TACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCA 273 consensus_6342#1 TACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCA 359 *********** ************************************************ consensus_6342#0 CCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCG 333 consensus_6342#1 CCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCG 419 ****************************** ************************ **** consensus_6342#0 TCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATG 393 consensus_6342#1 TCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATG 479 ******************* **************************************** consensus_6342#0 GAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTG 453 consensus_6342#1 GAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTG 539 **************** ** **************************************** consensus_6342#0 GAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGA 513 consensus_6342#1 GAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGA 599 ****************************** ***************************** consensus_6342#0 GTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCA 573 consensus_6342#1 GTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCA 659 ******* ***** ******************* ************* ************ consensus_6342#0 CTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGG 633 consensus_6342#1 CTGATCCG---------------------------------------------------- 667 ******** consensus_6342#0 TGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGC 693 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 ACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCC 753 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 CCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGT 813 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 TCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGA 873 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 CGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCG 933 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 TGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCC 993 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 ATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCG 1053 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 ATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCT 1113 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 CCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACT 1173 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 ATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCG 1233 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 GACTGTCGGCATACCCAAGGAAACT 1258 consensus_6342#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||