These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1175 fasta sequence [GGCAGAATCCCCCCGCGGTTTTACGCTCTTGTTCGGATAACACGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGTGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAACTGTGACACTGCTACAGCCCGATAGCTGGATGACAACCAACACCAATAATATCTTGCTCAGCAGCTGTTATATCNGTATGGCAAACAGCAATTTCCGCAGATGATANATATACTATANATAATAGTTATAAAGATCACGTAGACACAAAGTNNTGTATCAAAAGGGTTAGAGCNTTAAAAGCATANAAAGTATCCTTATAAACAGCCTAGTATAACCTATTACACCGTACGCAAATGCTTGAGGANGAAAGCGAACTTGTTCAANTTGGAGCAATTGGGTNTATCCTCCAAGATGGCCACACGACAAAAGGCAACTATTTGCCCTTGCGCATGTGGCTTGGCGGACAAACAAAATATGAAAAGGAGCGCCCCGAGTTAACGGAAGTTACACTTGGGCACAACCCTATATGGACCGGCGGCAGCGGTTCCGCAGCAACACCGGCCGCACACCAANGCGACAGGACACACACAGACAGGGTTCCGCACNCCAAGAGCCGGGCCGGCCCAATTTTAATATGGAANTTGAGGNGGAGAATCCGGGAAAGCAAANACTTGGACGAGGANTATAAGGANCGGAATTAGGAACGNGCAGCCCAAACAACGGCCCAACACGGGGNGCCCTCTAGGGCGGCCACACCTTCACGGACAGTTCANTACCAGGAAAGACCCCCCNGGCTAAACCANNAATTGGGTANGGAANCGGGCACCAATCCAATAAACACTGCGAGATTGGTATANGCCANNTGGTNAGGGCACCATTGGNGCAAAGGCCCCACACAAANCTCGCGGCAAGGANCGTAANACCCAAACAANCNGNGNGCGAGAANNTTATTANCANCACCCATACTTGNGATNCCGGCCTTGGTTTANGTTTCAANACCCANGACAGGCCGCCGGCGAACACACGGNTGGGTCCCGGGTGGCCACATGANGGATATACCAGAAATAGGGGAGCCCACAGCACACACACACTTANCANTAGANTGGCGCC] [+] EMBL AL692549 [GGCAGAATCCCCCCGCGGTTTTACGCTCTTGTTCGGATAACACGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGTGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAACTGTGACACTGCTACAGCCCGATAGCTGGATGACAACCAACACCAATAATATCTTGCTCAGCAGCTGTTATATCNGTATGGCAAACAGCAATTTCCGCAGATGATANATATACTATANATAATAGTTATAAAGATCACGTAGACACAAAGTNNTGTATCAAAAGGGTTAGAGCNTTAAAAGCATANAAAGTATCCTTATAAACAGCCTAGTATAACCTATTACACCGTACGCAAATGCTTGAGGANGAAAGCGAACTTGTTCAANTTGGAGCAATTGGGTNTATCCTCCAAGATGGCCACACGACAAAAGGCAACTATTTGCCCTTGCGCATGTGGCTTGGCGGACAAACAAAATATGAAAAGGAGCGCCCCGAGTTAACGGAAGTTACACTTGGGCACAACCCTATATGGACCGGCGGCAGCGGTTCCGCAGCAACACCGGCCGCACACCAANGCGACAGGACACACACAGACAGGGTTCCGCACNCCAAGAGCCGGGCCGGCCCAATTTTAATATGGAANTTGAGGNGGAGAATCCGGGAAAGCAAANACTTGGACGAGGANTATAAGGANCGGAATTAGGAACGNGCAGCCCAAACAACGGCCCAACACGGGGNGCCCTCTAGGGCGGCCACACCTTCACGGACAGTTCANTACCAGGAAAGACCCCCCNGGCTAAACCANNAATTGGGTANGGAANCGGGCACCAATCCAATAAACACTGCGAGATTGGTATANGCCANNTGGTNAGGGCACCATTGGNGCAAAGGCCCCACACAAANCTCGCGGCAAGGANCGTAANACCCAAACAANCNGNGNGCGAGAANNTTATTANCANCACCCATACTTGNGATNCCGGCCTTGGTTTANGTTTCAANACCCANGACAGGCCGCCGGCGAACACACGGNTGGGTCCCGGGTGGCCACATGANGGATATACCAGAAATAGGGGAGCCCACAGCACACACACACTTANCANTAGANTGGCGCC] consensusID : consensus_6347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 861 fasta sequence [GGCAAGAATCGGCACGAGGTGCCTGTTTTTTTTTTGCAAACTTGCTTACGCTCTTGTTCGGATAACAGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAAC------GTGACACGCACGCCCGATAGCGGATGACAACAACACAATAATTCTTGCTAGCAGCTGTTTTCGTTGGCAAAGAATTTCCGCAGTGATTTTTACTTTTTTAGTTATAAGATCACGTAGCAAAAGTATGTTAAGGTGGCTAGCATTAGTTCTTACGCTGTTACTTTCCGTCCAAGCTGGAGAAGACTGGAATGGAGCATGGTTTCCCAACGCACCGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAGCCCGTCGATAATGCACTTGCGGAGGTCGACACCGCC-AAAGAGAAAAAGTCCCCAGCGCGCATTATGATGGGAATCGAGAATGCGGATTGTGATGACGCAAAGCACGGTCTGGCAATAGATTTCGACCCGTACAATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCGATTACAATATGGACGCTGTTATCACCGAGCGCAATGTGCCGGCTGCGTACGTGGCCAACCATAAGTGCATGAACAGNACCATAGAATATGCGGAAAGGATTCCTTCCTATGGAACGCATCGTCCGCTCTGGTCGAGGTATGGGGAGTACCGATACGTTCCTCCGCAGCGATGGCTGCACAACANCGAGCATGGCGCANTAATTGCTCTCTATC] [+] EMBL BX469858 [GGCAAGAATCGGCACGAGGTGCCTGTTTTTTTTTTGCAAACTTGCTTACGCTCTTGTTCGGATAACAGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAAC GTGACACGCACGCCCGATAGCGGATGACAACAACACAATAATTCTTGCTAGCAGCTGTTTTCGTTGGCAAAGAATTTCCGCAGTGATTTTTACTTTTTTAGTTATAAGATCACGTAGCAAAAGTATGTTAAGGTGGCTAGCATTAGTTCTTACGCTGTTACTTTCCGTCCAAGCTGGAGAAGACTGGAATGGAGCATGGTTTCCCAACGCACCGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAGCCCGTCGATAATGCACTTGCGGAGGTCGACACCGCCGAAAGAGAAAAAGTCCCCAGCGCGCATTATGATGGGAATCGAGAATGCGGATTGTGAT ] [+] EMBL BM652237 [ ccgaTTGCTTACGCTCTTGTTCGGATAACAGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGGCCCAAGTGAATCAAAGAGAAAGATCAATCCAAACCACCTGTAGCGCCCTGAACGTTTTGGTGACACGCACGCCCGATAGCGGATGACAACAACACAATAATTCTTGCTAGCAGCTGTTTTCGTTGGCAAAGAATTTCCGCAGTGATTTTTACTTTTTTAGTTATAAGATCACGTAGCAAAAGTATGTTAAGGTGGCTAGCATTAGTTCTTACGCTGTTACTTTCCGTCCAAGCAGGAGAAGACTGGAATGGAGCATGGTTTCCCAACGCACCGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAACCCGTCGATAATGCACTCCCGGCGGTCGACACCGCC AAAGAGAAAAAGTCCCCAACGCGCATTATGATGGGAATCGAAAATGCGGATTGTGATGACGCAAAGCACGGTCTGGCAATAGATTTTGACCCGTATAATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCGATTACAATATGGACGCTGTTATCACCGAGCACAATGTGCCGGCTGCGTACGTGGCC ] [+] EMBL BX608933 [ ACAGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAAC GTGACACGCACGCCCGATAGCGGATGACAACAACACAATAATTCTTGCTAGCAGCTGTTTTCGTTGGCAAAGAATTTCCGCAGTGATTTTTACTTTTTTAGTTATAAGATCACGTAGCAAAAGTATGTTAAGGTGGCTAGCATTAGTTCTTACGCTGTTACTTTCCGTCCAAGCTGGAGAAGACTGGAATGGAGCATGGTTTCCCAACGCACCGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAGCCCGTCGATAATGCACTTGCGGAGGTCGACACCGCC AAAGAGAAAAAGTCCCCAGCGCGCATTATGATGGGAATCGAGAATGCGGATTGTGATGACGCAAAGCACGGTCTGGCAATAGATTTCGACCCGTACAATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCGATTACAATATGGACGCTGTTATCACCGAGCGCAATGTGCCGGCTGCGTACGTGGCCAACCATAAGTGCAT ] [+] EMBL BX625552 [ ATGACGCAAAGCACGGTCTGGCAATAGATTTCGACCCGTACAATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCGATTACAATATGGACGCTGTTATCACCGAGCGCAATGTGCCGGCTGCNTACGTGGCCAACCATAAGTGCATGAACAGNACCATAGAATATGCGGAAAGGATTCCTTCCTATGGAACGCATCGTCCGCTCTGGTCGAGGTATGGGGAGTACCGATACGTTCCTCCGCAGCGATGGCTGCACAACANCGAGCATGGCGCANTAATTGCTCTCTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6347#0 -----------------------GGCAGAATCCCCCCGCGGTT--TTACGCTCTTGTTCG 35 consensus_6347#1 GGCAAGAATCGGCACGAGGTGCCTGTTTTTTTTTTGCAAACTTGCTTACGCTCTTGTTCG 60 * * * ** *************** consensus_6347#0 GATAACACGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGT 95 consensus_6347#1 GATAACA-GAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGT 119 ******* **************************************************** consensus_6347#0 GTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGTGCCCAAGTGAATCAAACAGAAAGA 155 consensus_6347#1 GTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAG-GCCCAAGTGAATCAAACAGAAAGA 178 *********************************** ************************ consensus_6347#0 TTAATCCAAACCACCTGTAGCGCCCTGAACTGTGACACTGCTACAGCCCGATAGCTGGAT 215 consensus_6347#1 TTAATCCAAACCACCTGTAGCGCCCTGAAC-GTGACAC--GCAC-GCCCGATAGC-GGAT 233 ****************************** ******* ** ********** **** consensus_6347#0 GACAACCAACACCAATAATATCTTGCTCAGCAGCTGTTATATCNGTATGGCAAACAGCAA 275 consensus_6347#1 GACAAC-AACAC-AATAAT-TCTTGCT-AGCAGCTGTT---TTCGT-TGGCAAAGA---A 282 ****** ***** ****** ******* ********** * ** ******* * * consensus_6347#0 TTTCCGCAGATGATANATATACTATANATAATAGTTATAAAGATCACGTAGACACAAAGT 335 consensus_6347#1 TTTCCGCAG-TGATTTTTACTTTTT------TAGTTATAA-GATCACGTAG---CAAA-- 329 ********* **** ** * * ********* ********** **** consensus_6347#0 NNTGTATCAAAAGGGTTAGAGCNTTAAAAGCATANAAAGTATCCTTATAAACAGCCTAGT 395 consensus_6347#1 AGTATGTTAAGGTGGCTAG--CATTAGTT-CTTACGCTGTTACTTTCCGTCCAAGCTGGA 386 * * * ** ** *** * *** * ** ** * ** ** ** * consensus_6347#0 ATAACCTATTACACCGTACGCAAATGCTTGAGGANGAAAGCGAACTTGTTCAANTTGGAG 455 consensus_6347#1 GAAGACT------------------------GGAATGGAGCATGGTTTCCCAAC--GCAC 420 * ** *** *** ** *** * * consensus_6347#0 CAATTGGGTNTATCCTCCAAGATGGCCACACGACAAAAGGCAACTATT-TGCCCTTGCGC 514 consensus_6347#1 CGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAGCCCGTCGATAATGCACTTGCGG 480 * * * * *** * * **** * ** * ** * * ** *** ****** consensus_6347#0 ATGTGGCTTGGCGGACAAACAAAATATGAAAAGGAGCGCCCCGAGTTAACGGAAGTTACA 574 consensus_6347#1 AGGTCGAC------ACCGCCAAA----GAGAAAAAGTCCCCAGCGCGCATTATGATGGGA 530 * ** * ** **** ** ** ** *** * * * * * consensus_6347#0 CTTGGGCACA-ACCCTATATGGACCGGCGGCAGCGGTTCCGCAGCAACACCGGCCGCACA 633 consensus_6347#1 ATCGAGAATGCGGATTGTGATGACGCAAAGCA-CGGTCTGGCAATAGATTTCGACCCGTA 589 * * * * * * *** *** **** *** * * * * * consensus_6347#0 CCAANGCGACAGGACACACACAGACAGGGTTCCGCACNCCAAGAGCCGG--GCCGGCCCA 691 consensus_6347#1 C-AATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCG 648 * ** * *** ** * ** ** **** ** * * * * consensus_6347#0 ATTTTAATATGGAANTTGAGGNGGAGAATCCGGGAAAGCAAANACTTGGACGAGGANTAT 751 consensus_6347#1 ATTACAATATGGACGCTGTT-------ATCACCGAGCGCAATGTGCCGGCTGCGTACGTG 701 *** ******** ** *** ** **** ** * * * consensus_6347#0 AAGGANCGGAATTAGGAACGNGCAGCCCAAACAACGGCCCAACACGGGGNGCCCTCTAGG 811 consensus_6347#1 GCCAACCATAAGT--GCATGAACAGNACCATAGAATATGCGGAAAGGATTCCTTCCTATG 759 * * ** * * * * *** * * * * * ** * *** * consensus_6347#0 GCGGCCACACCTTCACGGACAGTTCANTACCAGGAAAGACCCCCCNGGCTAAACCANNAA 871 consensus_6347#1 --GAACGCATCGTC-CGCTCTGGTCGAGGTATGGGGAGTACCGATACGTT---CCTCC-- 811 * * ** * ** ** * * ** ** ** ** * * ** consensus_6347#0 TTGGGTANGGAANCGGGCACCAATCCAATAAACACTGCGAGATTGGTATANGCCANNTGG 931 consensus_6347#1 ----GCAGCGATGGCTGCACAA---CANCGAGCATGGCGCANTAATTGCTCTCTATC--- 861 * * ** **** * ** * ** *** * * * * consensus_6347#0 TNAGGGCACCATTGGNGCAAAGGCCCCACACAAANCTCGCGGCAAGGANCGTAANACCCA 991 consensus_6347#1 ------------------------------------------------------------ consensus_6347#0 AACAANCNGNGNGCGAGAANNTTATTANCANCACCCATACTTGNGATNCCGGCCTTGGTT 1051 consensus_6347#1 ------------------------------------------------------------ consensus_6347#0 TANGTTTCAANACCCANGACAGGCCGCCGGCGAACACACGGNTGGGTCCCGGGTGGCCAC 1111 consensus_6347#1 ------------------------------------------------------------ consensus_6347#0 ATGANGGATATACCAGAAATAGGGGAGCCCACAGCACACACACACTTANCANTAGANTGG 1171 consensus_6347#1 ------------------------------------------------------------ consensus_6347#0 CGCC 1175 consensus_6347#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||