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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1456 fasta sequence
[CCGGTCCGCAAGGTTTCGTTGGTGACGGGGTGTCGCAGTGCCGTTCCATTCCACCGCCGTGCAATGTGAGGAACAACTGCGGGCTGCATGCTGCCTGTGTGCCGAGCTATAGAGATCCTTCCTCGTACGAGTGTATGTGCAATCAGGGCTTCTTTGGCGATGGGTTCGTCTGCACACCGGAGCGCAACTGTGCCAATATCCCGAGCCTGTGCGATCCGAACGCTCGCTGCGAGTCCACTACCAACGGCTACCAGTGCATCTGTAACGATGGCTTCATCGGCAACGGGTCCGTCTGCAACACCGCTCACCGGCTGGACGATGGCTTCCTGCTCATCAGCCAGGGTGTGGCGAACATTCGCGTCCCGCTGAACGGTGGACTCGGGTACCCCGTCACGATGGCGTTCATGTCGATCGGGCTCGATCGGGACTGTGCCGAGGGACGCATCTACTGGAGCGACATTGCGGCCCAGCAGATCGTGAGCGCCAAGTACGATGGTACCGATCAGAAGCCGTTCATCACGAAGGACATCGTGTCGCCGGAGGGTGTGGCGGTCGATTGGATCTCGCGCCGGCTGTACTGGACCGATTCGGCGAAGGATACGATCGAGGTGGCGAGCCTGGACAATCCGGAGCAGAGGACGGTGCTGATTTCGAAGTTTTTGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCACTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACCAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGTGTGTACTCTAGAAGGGGGGACGGCTGTTGGTTGGTTTTGTGCTTTTCTACTGTGGGCAACCTTTACAAACAGACAATCGGCCGTGCAGTAATGCGTGTTTTTTGTACTTCCCCACTTTTCCCTTTTTCCTTCCTGAAAGCTGAAACAAAAAAAAGCAATTTATCTTGACATACATTAGGATTAGCACAGAGAGAGAGAGAGAGTGGATGATG]
[+] EMBL BM581240 [CCGGTCCGCAAGGTTTCGTTGGTGACGGGGTGTCGCAGTGCCGTTCCATTCCACCGCCGTGCAATGTGAGGAACAACTGCGGGCTGCATGCTGCCTGTGTGCCGAGCTATAGAGATCCTTCCTCGTACGAGTGTATGTGCAATCAGGGCTTCTTTGGCGATGGGTTCGTCTGCACACCGGAGCGCAACTGTGCCAATATCCCGAGCCTGTGCGATCCGAACGCTCGCTGCGAGTCCACTACCAACGGCTACCAGTGCATCTGTAACGATGGCTTCATCGGCAACGGGTCCGTCTGCAACACCGCTCACCGGCTGGACGATGGCTTCCTGCTCATCAGCCAGGGTGTGGCGAACATTCGCGTCCCGCTGAACGGTGGACTCGGGTACCCCGTCACGATGGCGTTCATGTCGATCGGGCTCGATCGGGACTGTGCCGAGGGACGCATCTACTGGAGCGACATTGCGGCCCAGCAGATCGTGAGCGCCAAGTACGATGGTACCGATCAGAAGCCGTTCATCACGAAGGACATCGTGTCGCCGGAGGGTGTGGCGGTCGATTGGATCTCGCGCCGGCTGTACTGGACCGATTCGGCGAAGGATACGATCGAGGTGGCGAGCCTGGACA ]
[+] EMBL BX627511 [ GTGGCGGTCGATTGGATCTCGCGCCGGCTGTACTGGACCGATTCGGCGAAGGATACGATCGAGGTGGCGAGCCTGGACAATCCGGAGCAGAGGACGGTGCTGATTTCGAAGTTTTTGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCACTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACCAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGT ]
[+] EMBL BX613410 [ GCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCACTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACCAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGTGTGTACTCTAGAAGGGGGGACGGCTGTTGGTTGGTTTTGTGCTTTTCTACTGTGGGCAACCTTTACAAACAGACAATCGGCCGTGCAGTAATGCGTGTTTTTTGTACTTCCCCACTTTTCCCTTTTTCCTTCCTGAAAGCTGAAACAAAAAAAAGCAATTTATCTTGACATACATTAGGATTAGCACAGAGAGAGAGAGAGAGTGGATGATG]
consensusID : consensus_6349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGCGGACGCGTGGGCTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCTCTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGTGTGTTACTCTAGAAAGGGGGACGGCTGTTGGGTTTGGTTTTGTGCTTTTCTACTGCGGGCAACCTTTACAAACAGACAATCGGCCGTGTAGTAATGCGTGTTTTTTTTGTACTTCCCAC]
[+] EMBL BM595274 [CCGCGGACGCGTGGGCTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCTCTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGTGTGTTACTCTAGAAAGGGGGACGGCTGTTGGGTTTGGTTTTGTGCTTTTCTACTGCGGGCAACCTTTACAAACAGACAATCGGCCGTGTAGTAATGCGTGTTTTTTTTGTACTTCCCAC]
consensusID : consensus_6349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[CCGAGGTTTACATCTACTAGATGATAGTAGTCGTNCCGCGGATTGTAGTAGTCGGTCGATTGGATCTCGCGCCTGGCTGTACTGGACCGATTCGGACGAAGAGATACGATCNAGTGGNGAGCCTGANAATCCGGANCAAAGTGGCGTGTGCTGATTTCNAAGTTTATTGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGANTGGTCGAATTTGGACTGGAACGGAGCTGGGAGCAGCTGGTCGGTAGATCCGCAGTGTAGCACTGCCGCAACAGCATACCAGAGTGTCGATGGCTGACTGTGTGAGCTCTANGTATACGCTGACGCGGGAACGANACGAAGGTNTTGATGGTGTNNTTGATACGTACAGCAGACAGATCCGCACGATCGNCAGCAATCTGACGTACCCGTTCGGGTTGGACCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAAGCATCAACTGTACGTGTGTTGCTGCCAGCAAGCCTGATCAACTCGCCCGTGCTATAGGTAACCACAAGATGTACGGGATGACCGGCCGTCACCGACCAAGTGCCCGANTGTATCCACAGCCCTTGCNGTCAG]
[+] EMBL AL692532 [CCGAGGTTTACATCTACTAGATGATAGTAGTCGTNCCGCGGATTGTAGTAGTCGGTCGATTGGATCTCGCGCCTGGCTGTACTGGACCGATTCGGACGAAGAGATACGATCNAGTGGNGAGCCTGANAATCCGGANCAAAGTGGCGTGTGCTGATTTCNAAGTTTATTGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGANTGGTCGAATTTGGACTGGAACGGAGCTGGGAGCAGCTGGTCGGTAGATCCGCAGTGTAGCACTGCCGCAACAGCATACCAGAGTGTCGATGGCTGACTGTGTGAGCTCTANGTATACGCTGACGCGGGAACGANACGAAGGTNTTGATGGTGTNNTTGATACGTACAGCAGACAGATCCGCACGATCGNCAGCAATCTGACGTACCCGTTCGGGTTGGACCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAAGCATCAACTGTACGTGTGTTGCTGCCAGCAAGCCTGATCAACTCGCCCGTGCTATAGGTAACCACAAGATGTACGGGATGACCGGCCGTCACCGACCAAGTGCCCGANTGTATCCACAGCCCTTGCNGTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6349#0 CCGGTCCGCAAGGTTTCGTTGGTGACGGGGTGTCGCAGTGCCGTTCCATTCCACCGCCGT 60
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 GCAATGTGAGGAACAACTGCGGGCTGCATGCTGCCTGTGTGCCGAGCTATAGAGATCCTT 120
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 CCTCGTACGAGTGTATGTGCAATCAGGGCTTCTTTGGCGATGGGTTCGTCTGCACACCGG 180
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 AGCGCAACTGTGCCAATATCCCGAGCCTGTGCGATCCGAACGCTCGCTGCGAGTCCACTA 240
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 CCAACGGCTACCAGTGCATCTGTAACGATGGCTTCATCGGCAACGGGTCCGTCTGCAACA 300
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 CCGCTCACCGGCTGGACGATGGCTTCCTGCTCATCAGCCAGGGTGTGGCGAACATTCGCG 360
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 TCCCGCTGAACGGTGGACTCGGGTACCCCGTCACGATGGCGTTCATGTCGATCGGGCTCG 420
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 ATCGGGACTGTGCCGAGGGACGCATCTACTGGAGCGACATTGCGGCCCAGCAGATCGTGA 480
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 GCGCCAAGTACGATGGTACCGATCAGAAGCCGTTCATCACGAAGGACATCGTGTCGCCGG 540
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 -------------CCGAGGTTTACATCTACTAGATGATAGTAGTCGTNCCGCGGATTGTA 47
consensus_6349#0 AGGGTGTGGCGGTCGATTGGATCTCGCGCCGGCTGTACTGGACCGATTCGGCGAAGGATA 600
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 GTAGTCGGTCGATTGGATCTCGCGCCTGGCTGTACTGGACCGATTCGGACGAAGAGATAC 107
consensus_6349#0 CGATCGAGGTGGCGAGCCTGGACAATCCGGAGCAGAGGACGGTGCTGATTTCGAAGTTTT 660
consensus_6349#1 ------------------------------------------------------------
consensus_6349#2 GATCNAGTGGNGAGCCTGANAATCCGGANCAAAGTGGCGTGTGCTGATTTCNAAGTTTAT 167
consensus_6349#0 TGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGT-CGGAC 719
consensus_6349#1 --------------------------------------------CCGCGGACGCGTGGGC 16
consensus_6349#2 TGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGT-CGGAC 226
* * * ** *
consensus_6349#0 TGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGAC-GGAACGGAGC-GGGAGC 777
consensus_6349#1 TGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGAC-GGAACGGAGC-GGGAGC 74
consensus_6349#2 TGGAATCGGGATGGGCCGAAGATTGANTGGTCGAATTTGGACTGGAACGGAGCTGGGAGC 286
************************** *************** ********** ******
consensus_6349#0 AGCTGGTGGGTAG-TCCGCAG-GTAGCACTGCCG-AACAGCAT-CCAG-GTGTCGATGGC 832
consensus_6349#1 AGCTGGTGGGTAG-TCCGCAG-GTAGCTCTGCCG-AACAGCAT-CCAG-GTGTCGATGGC 129
consensus_6349#2 AGCTGGTCGGTAGATCCGCAGTGTAGCACTGCCGCAACAGCATACCAGAGTGTCGATGGC 346
******* ***** ******* ***** ****** ******** **** ***********
consensus_6349#0 -GACTGGG-GAGCTTTGT---TACGCTGACGCGGGAACGAA--GAAGGTTG----AGTGT 881
consensus_6349#1 -GACTGGG-GAGCTTTGT---TACGCTGACGCGGGAACGAA--GAAGGTTG----AGTGT 178
consensus_6349#2 TGACTGTGTGAGCTCTANGTATACGCTGACGCGGGAACGANACGAAGGTNTTGATGGTGT 406
***** * ***** * ******************* ****** ****
consensus_6349#0 ATT-GATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGG 940
consensus_6349#1 ATT-GATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGG 237
consensus_6349#2 NNTTGATACGTACAGCAGACAGATCCGCACGATCGNCAGCAATCTGACGTACCCGTTCGG 466
* ******************************* ************************
consensus_6349#0 GTTGG-CCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACCAAAAAGATCGAAA 999
consensus_6349#1 GTTGG-CCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAA 296
consensus_6349#2 GTTGGACCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAA 526
***** **************************************** *************
consensus_6349#0 GCATCAACCTGTACG-GTGTG--CGCCAG-AAGCC-GATCAACTCGCCCGTGTTT--GGC 1052
consensus_6349#1 GCATCAACCTGTACG-GTGTG--CGCCAG-AAGCC-GATCAACTCGCCCGTGTTT--GGC 349
consensus_6349#2 GCATCAAC-TGTACGTGTGTTGCTGCCAGCAAGCCTGATCAACTCGCCCGTGCTATAGGT 585
******** ****** **** ***** ***** **************** * **
consensus_6349#0 AACCACAAGATGTACGGCATGAC-GGCCGTCACCGAC-AAGTGCCCG-CTGT-TCCACAG 1108
consensus_6349#1 AACCACAAGATGTACGGCATGAC-GGCCGTCACCGAC-AAGTGCCCG-CTGT-TCCACAG 405
consensus_6349#2 AACCACAAGATGTACGGGATGACCGGCCGTCACCGACCAAGTGCCCGANTGTATCCACAG 645
***************** ***** ************* ********* *** *******
consensus_6349#0 CCCTTGCG-TCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGC 1167
consensus_6349#1 CCCTTGCG-TCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGC 464
consensus_6349#2 CCCTTGCNGTCAG----------------------------------------------- 658
******* ****
consensus_6349#0 GTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAG 1227
consensus_6349#1 GTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAG 524
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 ACTACTAAGAAGAATGTGTGT-ACTCTAGAAGGGGGGACGGCTGTTGG--TTGGTTTTGT 1284
consensus_6349#1 ACTACTAAGAAGAATGTGTGTTACTCTAGAAAGGGGGACGGCTGTTGGGTTTGGTTTTGT 584
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 GCTTTTCTACTGTGGGCAACCTTTACAAACAGACAATCGGCCGTGCAGTAATGCGTGTTT 1344
consensus_6349#1 GCTTTTCTACTGCGGGCAACCTTTACAAACAGACAATCGGCCGTGTAGTAATGCGTGTTT 644
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 TTTGTAC-TTCCCCACTTTTCCCTTTTTCCTTCCTGAAAGCTGAAACAAAAAAAAGCAAT 1403
consensus_6349#1 TTTTTGTACTTCCCAC-------------------------------------------- 660
consensus_6349#2 ------------------------------------------------------------
consensus_6349#0 TTATCTTGACATACATTAGGATTAGCACAGAGAGAGAGAGAGAGTGGATGATG 1456
consensus_6349#1 -----------------------------------------------------
consensus_6349#2 -----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||