These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1166 fasta sequence [CCGCCTGCCTGCCTGCCTGTGACAGTCTGCTCCTGTGTGTAAATACTGTTAAATTGCGTACCCCGGAACACGAGACCGCGCAATCTTCCCGTGAGCTCTGTCGGCTGCAGTGGGGGAAAGCAAAGGGAACCGAACAACTCCCGAAGCAAAAAAAGGCCATTCCGTGTTGTTGTCGGTGCATTACGGTTTTTTTTGCATTTCGCCTTCGAAAGGGTTTTTTT---TTGTCGCAAGCAAAAGCCGAGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTTTTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACACGTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAG-ATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGGTGGTAGTAGTAGGCTCTGACGAATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTAGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGTGAAGCGAAAGAAGATGAAAGAGGAAG-AAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGGAAAAGTTTGCATCCACGATCCCTGCAATCGAGTGAAGCAAAAGAAGGAGGGAAAAAGCACGTGATCGAGAAGAAGGAGAAAAAGACAAATTATTGTTTCATTTTCAGTATCCATTTTCAAGGAGGAGAAAGTAGTGAGTAGAAGGGGCGCGTAAGAGAAATAATAAATG] [+] EMBL BM638649 [CCGCCTGCCTGCCTGCCTGTGACAGTCTGCTCCTGTGTGTAAATACTGTTAAATTGCGTACCCCGGAACACGAGACCGCGCAATCTTCCCGTGAGCTCTGTCGGCTGCAGTGGGGGAAAGCAAAGGGAACCGAACAACTCCCGAAGCAAAAAAAGGCCATTCCGTGTTGTTGTCGGTGCATTACGGTTTTTTTTGCATTTCGCCTTCGAAAGGGTTTTTTTTTGTTGTCGCAAGCAAAAGCCGAGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTTTTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACACGTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGAATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTACTCCAAA ] [+] EMBL BX624118 [ TTTTGCATTTCGCCTTCGAAAGGGTTTTTTT TTGTCGCAAGCAAAAGCCGAGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTTTTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACACGTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAG ATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGGTGGTAGTAGTAGGCTCTGACGAATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTT ] [+] EMBL BM619451 [ ccgCAAACTCTCTCAACGTAGTAAAAAACACGTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAG ATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGGTGGTAGTAGTAGGCTCTGACGAATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTAGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGTGAAGCGAAAGAAGATGAAAGAGGAAG AAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGGAAAAGTTTGCATCCACGATCCC ] [-] EMBL BX620704 [ GCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTAGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGTGAAGCGAAAGAAGATGAAAGAGGAAGAAAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGGAAAAGTTTGCATCCACGATCCCTGCAATCGAGTGAAGCAAAAGAAGGAGGGAAAAAGCACGTGATCGAGAAGAAGGAGAAAAAGACAAATTATTGTTTCATTTTCAGTATCCATTTTCAAGGAGGAGAAAGTAGTGAGTAGAAGGGGCGCGTAAGAGAAATAATAAATG] consensusID : consensus_6350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [CCGAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTAGTCCAAACGGAAACAATCGAAACGAAGAACTCCGCGGTGTGTTTTGGGGTGGTAATAGTAGGCTCTGACGATGAATAGGGTGTACGATGTACGATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTTGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTAAAAAAAAACCAG] [+] EMBL BM613657 [CCGAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTAGTCCAAACGGAAACAATCGAAACGAAGAACTCCGCGGTGTGTTTTGGGGTGGTAATAGTAGGCTCTGACGATGAATAGGGTGTACGATGTACGATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTTGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTAAAAAAAAACCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6350#0 CCGCCTGCCTGCCTGCCTGTGACAGTCTGCTCCTGTGTGTAAATACTGTTAAATTGCGTA 60 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 CCCCGGAACACGAGACCGCGCAATCTTCCCGTGAGCTCTGTCGGCTGCAGTGGGGGAAAG 120 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 CAAAGGGAACCGAACAACTCCCGAAGCAAAAAAAGGCCATTCCGTGTTGTTGTCGGTGCA 180 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 TTACGGTTTTTTTTGCATTTCGCCTTCGAAAGGGTTTTTTTTTGTCGCAAGCAAAAGCCG 240 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 AGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTT 300 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 TTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACAC 360 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 GTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGT 420 consensus_6350#1 CCGAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGT 60 ********************************************************* consensus_6350#0 GCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGG 480 consensus_6350#1 GCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGG 120 ************************************************************ consensus_6350#0 GTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTC 540 consensus_6350#1 GTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTC 180 ************************************************************ consensus_6350#0 CTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGG-TGG 599 consensus_6350#1 CTTCTGTAGTCCAAACGGAAACAATCGAAACGAAGAACTCCGCGGTGTGTTTTGGGGTGG 240 ******** ********************************* ************* *** consensus_6350#0 TAGTAGTAGGCTCTGACGA----------------------ATGTGTAGGGAACGAATGA 637 consensus_6350#1 TAATAGTAGGCTCTGACGATGAATAGGGTGTACGATGTACGATGTGTAGGGAACGAATGA 300 ** **************** ******************* consensus_6350#0 ATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTT 697 consensus_6350#1 ATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTT 360 ************************************************************ consensus_6350#0 AAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTT 757 consensus_6350#1 AAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTT 420 ************************************************************ consensus_6350#0 CTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGA 817 consensus_6350#1 CTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGA 480 ************************************************************ consensus_6350#0 AGCACGATAAGAAGTAGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAA 877 consensus_6350#1 AGCACGATAAGAAGTTGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAA 540 *************** ******************************************** consensus_6350#0 CAAAGAAAACCAACAAATTGTATCAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGT 937 consensus_6350#1 CAAAGAAAACCAACAAATTGTATCAGGAATTAAAAAAAAACCAG---------------- 584 ******************************* ******** ** consensus_6350#0 GAAGCGAAAGAAGATGAAAGAGGAAGAAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGG 997 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 AAAAGTTTGCATCCACGATCCCTGCAATCGAGTGAAGCAAAAGAAGGAGGGAAAAAGCAC 1057 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 GTGATCGAGAAGAAGGAGAAAAAGACAAATTATTGTTTCATTTTCAGTATCCATTTTCAA 1117 consensus_6350#1 ------------------------------------------------------------ consensus_6350#0 GGAGGAGAAAGTAGTGAGTAGAAGGGGCGCGTAAGAGAAATAATAAATG 1166 consensus_6350#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||