These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 970 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGGTGTACAACAAACAACACGCAACTACGTCATTGATGATGATTAGCAAGGTCAGCACATTTACGCACCCGCACCGATAGAACCAGCTCGACCCTAGCATCATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGATTGCCAAAAAAAACACAGCACAAACACACACACATACTCACCAAAACATCACCACCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGCCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGACCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCATCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGGTATCAGAACGCGCTGCAGGGCCTGGGGCAGATTTATCGGCACGAGGGCGTCCGGGGACTGTACCGGGGCGTCGGTCCGGCCATGCTGCAGATTGCCCCGCTGGCTGGTGGTCAGTTTATGTTTTACAATCTGTTCGGTACGGTGGTGAAGCGGTTGGAGGGGCTGTCGCCCGAGGCGCAGCTGCCGTCCGGCGAGCTGTTCGTGTGCGGTGGGCTGGCCGGGCTGTGCACCAAGCTGCTGGTCTATCCGCTCGATCTGACGAAGAAGCGGCTC] [+] EMBL BM584472 [CCGCCCACGCGTCCGCCCACGCGTCCGCGGTGTACAACAAACAACACGCAACTACGTCATTGATGATGATTAGCAAGGTCAGCACATTTACGCACCCGCACCGATAGAACCAGCTCGACCCTAGCATCATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGATTGCCAAAAAAAACACAGCACAAACACACACACATACTCACCAAAACATCACCACCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGCCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGACCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTG ] [+] EMBL BX615060 [ CCACAACCCGGCCCATGTGCTGTCGCTCTTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTCCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCATCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGGTATCAGAACGCGCTGCAGGGCCTGGGGCAGATTTATCGGCACGAGGGCGTCCGGGGACTGTACCGGGGCGTCGGTCCGGCCATGCTGCAGATTGCCCCGCTGGCTGGTGGTCAGTTTATGTTTTACAATCTGTTCGGTACGGTGGTGAAGCGGTTGGAGGGGCTGTCGCCCGAGGCGCAGCTGCCGTCCGGCGAGCTGTTCGTGTGCGGTGGGCTGGCCGGGCTGTGCACCAAGCTGCTGGTCTATCCGCTCGATCTGACGAAGAAGCGGCTC] consensusID : consensus_6357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 762 fasta sequence [ATCGGCANGAGGTNNTGAGTCAGACGCGACAGTAGTGATGTAACGCACAAACGGTTGGAACGGACTGCAAAAAAAAAAAAACAGCACAAACACACACACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACACGCTTCATCTGTCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGTCCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTCCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCATCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGTATCAGAACGCGCTGCAGGCCTGGGGCAGATTTATCTGGCAACAGAGGGCGTCCGGGGGACTGTACCGGGGGCAGTCGGTCCGGCATGCTGGCAGATTGCCCCCGNTGGCTTGTTGGTCAGTTATGGTTTACACTCTTGTTCGNTACNGGTAGGTGAAGCNCGNGTAAGGAAGGGGTATCGCCAGAGGCG] [+] EMBL BX469590 [ATCGGCANGAGGTNNTGAGTCAGACGCGACAGTAGTGATGTAACGCACAAACGGTTGGAACGGACTGCAAAAAAAAAAAAACAGCACAAACACACACACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACACGCTTCATCTGTCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGTCCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTCCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCATCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGTATCAGAACGCGCTGCAGGCCTGGGGCAGATTTATCTGGCAACAGAGGGCGTCCGGGGGACTGTACCGGGGGCAGTCGGTCCGGCATGCTGGCAGATTGCCCCCGNTGGCTTGTTGGTCAGTTATGGTTTACACTCTTGTTCGNTACNGGTAGGTGAAGCNCGNGTAAGGAAGGGGTATCGCCAGAGGCG] consensusID : consensus_6357#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCTTTGGCTGGACCACCAGTAAGTACGGGACCACCGAAAAACGGGCAACCAAGCGGATGCCTTCTTTTCGTCGGACGCACGGTGTACAACAAACAACACGCAACTACGCCATTGATGATGATTAGCAAGGTCAGCACAGTTACGCACCCGCACCGATAGAACCAGCCCGACCCCAG---CATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGATTGCCAAAAAAAAAACACACAGCACAAACACACACATACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGTCAGCCGCTGGACGTACTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGGCCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGCACGACCAGGCACGGC] [+] EMBL BM635474 [CCGCCCACGCGTCCGCCCACGCGTCCGCTTTGGCTGGACCACCAGTAAGTACGGGACCACCGAAAAACGGGCAACCAAGCGGATGCCTTCTTTTCGTCGGACGCACGGTGTACAACAAACAACACGCAACTACGCCATTGATGATGATTAGCAAGGTCAGCACAGTTACGCACCCGCACCGATAGAACCAGCCCGACCCCAG CATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGATTGCCAAAAAAAAAACACACAGCACAAACACACACATACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGTCAGCCGCTGGACGTACTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGGCCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCT ] [+] EMBL BM605833 [ CCGCTTTGGCTGGACCGCCAGTAAGTACGGGACCACCGAAAAACGGGCAACCAAGCGGATGCCTTCTTTTCGTCGGACGCACGGTGTACAACAAACAACACGCAACTACGCCATTGATGATGATTAGCAAGGTCAGCACAGTTACGCACCCGCACCGATAGAACCAGCCCGACCCCAGCATCATCATCATCCGAGTCAGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGACTGCCAAAAAAAACACACACAGCACAAACACACAC ACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGTCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGTCCGGCTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGCACGACCAGGCACGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6357#0 ------------------------------------------------------------ consensus_6357#1 ------------------------------------------------------------ consensus_6357#2 CCGCCCACGCGTCCGCCCACGCGTCCGCTTTGGCTGGACCACCAGTAAGTACGGGACCAC 60 consensus_6357#0 ---------------CCGCCCACGCGTCCGCCCACGCGTCCGCGGTGTACAACAAACAAC 45 consensus_6357#1 ------------------------------------------------------------ consensus_6357#2 CGAAAAACGGGCAACCAAGCGGATGCCTTCTTTTCGTCGGACGCACGGTGTACAACAAAC 120 consensus_6357#0 ACGCAACTACGTCATTGATGATGATTAGCAAGGTCAGCACATTTACGCACCCGCACCGAT 105 consensus_6357#1 ------------------------------------------------------------ consensus_6357#2 AACACGCAACTACGCCATTGATGATGATTAGCAAGGTCAGCACAGTTACGCACCCGCACC 180 consensus_6357#0 AGAACCAGCTCGACCCTAGCATCATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAA 165 consensus_6357#1 -----------------ATCGGCANGAGGTNNTGAGTCAGACGCGACAGTAGTGATGTAA 43 consensus_6357#2 GATAGAACCAGCCCGACCCCAGCATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAA 240 * ** * ***** ** ****************** consensus_6357#0 CGCACAAACGTTTGGAACGGATTGCCAAAAAAAACA----CAGCACAAACACACACACAT 221 consensus_6357#1 CGCACAAACGGTTGGAACGGACTGCAAAAAAAAAAAAA--CAGCACAAACACACACA--- 98 consensus_6357#2 CGCACAAACGTTTGGAACGGATTGCCAAAAAAAAAACACACAGCACAAACACACACA--T 298 ********** ********** *** ******** * ***************** consensus_6357#0 ACTCACCAAAACATCACCACCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCC 281 consensus_6357#1 -CTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCC 157 consensus_6357#2 ACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCC 358 ****************** **************************************** consensus_6357#0 GGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGCCAGCCGC 341 consensus_6357#1 GGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACACGCTTCATCTGTCAGCCGC 217 consensus_6357#2 GGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGTCAGCCGC 418 **************************************** *********** ******* consensus_6357#0 TGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGACCGGGTCCAGCC 401 consensus_6357#1 TGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGTCCGGGTCCAGCC 277 consensus_6357#2 TGGACGTACTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGGCCGGGTCCAGCC 478 ******* *************************************** ************ consensus_6357#0 ACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGC 461 consensus_6357#1 ACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGC 337 consensus_6357#2 ACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGC 538 ************************************************************ consensus_6357#0 TTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGC 521 consensus_6357#1 TTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGC 397 consensus_6357#2 TTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGC 598 ************************************************************ consensus_6357#0 AGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGC 581 consensus_6357#1 AGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTCCTGGACGGGC 457 consensus_6357#2 AGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGC 658 ************************************************* ********** consensus_6357#0 ACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCA 641 consensus_6357#1 ACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCA 517 consensus_6357#2 ACGACCAGGCACGGC--------------------------------------------- 673 *************** consensus_6357#0 TCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGGTATC 701 consensus_6357#1 TCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGG-TATC 576 consensus_6357#2 ------------------------------------------------------------ consensus_6357#0 AGAACGCGCTGCAGGGCCTGGGGCAGATTTATC-GGCAC--GAGGGCGTCCGGGG-ACTG 757 consensus_6357#1 AGAACGCGCTGCAGG-CCTGGGGCAGATTTATCTGGCAACAGAGGGCGTCCGGGGGACTG 635 consensus_6357#2 ------------------------------------------------------------ consensus_6357#0 TACCGGGGC--GTCGGTCCGGCCATGCTG-CAGATTGCCCC-GCTGGCTGGT-GGTCAGT 812 consensus_6357#1 TACCGGGGGCAGTCGGTCCGGC-ATGCTGGCAGATTGCCCCCGNTGGCTTGTTGGTCAGT 694 consensus_6357#2 ------------------------------------------------------------ consensus_6357#0 TTATGTTTTACAATCT-GTTCGGTACGGT--GGTGAAGCGGTTG----GAGGGGCTGTCG 865 consensus_6357#1 T-ATGGTTTACACTCTTGTTCGNTACNGGTAGGTGAAGCNCGNGTAAGGAAGGGGTATCG 753 consensus_6357#2 ------------------------------------------------------------ consensus_6357#0 CCCGAGGCGCAGCTGCCGTCCGGCGAGCTGTTCGTGTGCGGTGGGCTGGCCGGGCTGTGC 925 consensus_6357#1 CCAGAGGCG--------------------------------------------------- 762 consensus_6357#2 ------------------------------------------------------------ consensus_6357#0 ACCAAGCTGCTGGTCTATCCGCTCGATCTGACGAAGAAGCGGCTC 970 consensus_6357#1 --------------------------------------------- consensus_6357#2 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||