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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[ATGTTTGCAATGTTTTATGTTTTTGCTTTCATACACGATTACTGGGGGGGACTATGCAATGGTTTTGTGCCACGTGTGGCTGTCGTGTACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTACTCTATTATTACAAGCAAACAAACAATGGACTGCGCTTTTTAAAAAGGTTGAATCGTAACGGCAACAGAAGCAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGG-TTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTACTATCCTGAACACAAGCCACCGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTGATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACACGAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACAAAAAAAAACAAAACTTGTGTACTGTGAAACAGGCCACAAAAATAAACTT]
[+] EMBL BX613390 [ATGTTTGCAATGTTTTATGTTTTTGCTTTCATACACGATTACTGGGGGGGACTATGCAATGGTTTTGTGCCACGTGTGGCTGTCGTGTACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTACTCTATTATTACAAGCAAACAAACAATGGACTGCGCTTTTTAAAAAGGTTGAATCGTAACGGCAACAGAAGCAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGG TTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTACTATCCTGAACACAAG ]
[+] EMBL BX609216 [ TATATTTAAAAAGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGGTTTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTACTATCCTGAACACAAGCCACCGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTGATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACACGAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACAAAAAAAAACAAAACTTGTGTACTGTGAAACAGGCCACAAAAATAAACTT]
consensusID : consensus_6362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[ATCCCCCGAGGTTNTTTTTGCTTTCATACACGATTACTGGGGNGGGACTATGCAACGGTTTTGTGCCACGTGTGTGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTTCTCTATTATTACAAGCAAACAACACAATGGACTGCGCTTTTTAAGAAGGTTGAATCGTAACGGCAACAGATGTAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTNTTGAGGGCATATCTCNGGTGNTAGACAANCTGGAAGCAAGATGGACAAAAGGCACACACAGCAGTGGACACAGCTACACGTTGGCGCCCTCTAGGGCAATAACTGAGTNNGGCTTTTCAAGGGGCTCTATCTNCACNCTCNGCTACTGGTCNCANNACTTACNAGTAAGAAGCTTGCCTTATTTACGTACGCTTATCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGCAGNCCGCCGACCCT]
[+] EMBL AL694646 [ATCCCCCGAGGTTNTTTTTGCTTTCATACACGATTACTGGGGNGGGACTATGCAACGGTTTTGTGCCACGTGTGTGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTTCTCTATTATTACAAGCAAACAACACAATGGACTGCGCTTTTTAAGAAGGTTGAATCGTAACGGCAACAGATGTAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTNTTGAGGGCATATCTCNGGTGNTAGACAANCTGGAAGCAAGATGGACAAAAGGCACACACAGCAGTGGACACAGCTACACGTTGGCGCCCTCTAGGGCAATAACTGAGTNNGGCTTTTCAAGGGGCTCTATCTNCACNCTCNGCTACTGGTCNCANNACTTACNAGTAAGAAGCTTGCCTTATTTACGTACGCTTATCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGCAGNCCGCCGACCCT]
consensusID : consensus_6362#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[GCACAACNAACAATGGGACTGCGCTTTTTAANAAGGTTGAATCGTCAACGGCAACAGAAGCAGACAACAGCTAACCAGATTTCCGTGAGATTATATTTAAAAATGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACATAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGGTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTATTATCCTGAACACAAGCCACCGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTGATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACACGAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACTAAAAAANTACAAACAAAANGCCGGCATGTGC]
[-] EMBL BX466889 [GCACAACNAACAATGGGACTGCGCTTTTTAANAAGGTTGAATCGTCAACGGCAACAGAAGCAGACAACAGCTAACCAGATTTCCGTGAGATTATATTTAAAAATGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACATAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGGTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTATTATCCTGAACACAAGCCACCGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTGATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACACGAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACTAAAAAANTACAAACAAAANGCCGGCATGTGC]
consensusID : consensus_6362#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[AATCGCCACGAGGTNNGTTTTTGCTTTCATACACGATNTACTGGGGGGGACTATGCAACGGTTTTGTGCCACGTGTGGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTTCTCTATTATTACAAGCAAACAAACAATGGACTGCGCTTTTTAAGAAGGTTGAATCGTAACGGCAACAGATGTAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAACTGAGTTTGGTTTTCAACGGGGTTTACANTTGCTATGGTCTCGACCTTATTCCGTANAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGAGCCG]
[+] EMBL BX466179 [AATCGCCACGAGGTNNGTTTTTGCTTTCATACACGATNTACTGGGGGGGACTATGCAACGGTTTTGTGCCACGTGTGGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTTCTCTATTATTACAAGCAAACAAACAATGGACTGCGCTTTTTAAGAAGGTTGAATCGTAACGGCAACAGATGTAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAACTGAGTTTGGTTTTCAACGGGGTTTACANTTGCTATGGTCTCGACCTTATTCCGTANAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGAGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6362#1 ---ATC-CCCCGAGGTTN-TTTTTGCTTTCATACACGATTACTGGGGNGGGACTATGCAA 55
consensus_6362#3 --AATCGCCACGAGGTNNGTTTTTGCTTTCATACACGATNTACTGGGGGGGACTATGCAA 58
consensus_6362#0 ATGTTTGCAATGTTTTATGTTTTTGCTTTCATACACGATTACT-GGGGGGGACTATGCAA 59
consensus_6362#2 ------------------------------------------------------------
consensus_6362#1 CGGTTTTGTGCCACGTGTGTGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTA 115
consensus_6362#3 CGGTTTTGTGCCACGTGTG-GCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTA 117
consensus_6362#0 TGGTTTTGTGCCACGTGTG-GCTGTCGTGTACGTGGAATAAAATGATATTTTCAACGTTA 118
consensus_6362#2 ------------------------------------------------------------
consensus_6362#1 ACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTAC 175
consensus_6362#3 ACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTAC 177
consensus_6362#0 ACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTAC 178
consensus_6362#2 ------------------------------------------------------------
consensus_6362#1 ACTACAACTTCTCTATTATTACAAGCAAACAACACAATGG-ACTGCGCTTTTTAAGAAGG 234
consensus_6362#3 ACTACAACTTCTCTATTATTACAAGCAAACAA-ACAATGG-ACTGCGCTTTTTAAGAAGG 235
consensus_6362#0 ACTACAACTACTCTATTATTACAAGCAAACAA-ACAATGG-ACTGCGCTTTTTAAAAAGG 236
consensus_6362#2 ------------------------GCACAACNAACAATGGGACTGCGCTTTTTAANAAGG 36
*** * ******* ************** ****
consensus_6362#1 TTGAATCGT-AACGGCAACAGATGTAGACAACAGC-AACCAGATTTCCGTGAGATTATAT 292
consensus_6362#3 TTGAATCGT-AACGGCAACAGATGTAGACAACAGC-AACCAGATTTCCGTGAGATTATAT 293
consensus_6362#0 TTGAATCGT-AACGGCAACAGAAGCAGACAACAGC-AACCAGATTTCCGTGAGATTATAT 294
consensus_6362#2 TTGAATCGTCAACGGCAACAGAAGCAGACAACAGCTAACCAGATTTCCGTGAGATTATAT 96
********* ************ * ********** ************************
consensus_6362#1 TTAAAAA-GCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATG 351
consensus_6362#3 TTAAAAA-GCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATG 352
consensus_6362#0 TTAAAAA-GCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATG 353
consensus_6362#2 TTAAAAATGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATG 156
******* ******* ************************************ ******
consensus_6362#1 TACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTNTTGAGGGCATATCTCNGGTGNTAG 411
consensus_6362#3 TACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGG---ATATTTGGTGATAG 409
consensus_6362#0 TACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGG---ATATTTGGTGATAG 410
consensus_6362#2 TACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGG---ATATTTGGTGATAG 213
*********************************** ******* ** * **** ***
consensus_6362#1 ACAANCTGGAAGCAAGATGGACA-AAA--------------GGCACACACAGCAGTGGAC 456
consensus_6362#3 A--AACTGGAAGCAAGATGGACA-AAA--------------GGCACACACAGCAGTGGAA 452
consensus_6362#0 A--AACTGGAAGCAAGATGGACA-AAAAGCACACAAATAGAGGCACACACAGCAGTGGAA 467
consensus_6362#2 A--AACTGGAAGCAAGATGGACATAAAAGCACACAAATAGAGGCACACACAGCAGTGGAA 271
* * ****************** *** ******************
consensus_6362#1 ACAGCTACACGTTGGCGCCCTCTAGGGCAATAACTGAGTNNGGCTTTTCAAGGGGCTCTA 516
consensus_6362#3 A--GCTACA-GTTGG-GCCCTCTAGGG-AATAACTGAGTTTGGTTTTCAACGGGGTT--- 504
consensus_6362#0 A--GCTACA-GTTGG-GCCCTCTAGGG-AATAA-TGAGTTTGGTTTTCAAGGGGTTT--- 518
consensus_6362#2 A--GCTACA-GTTGG-GCCCTCTAGGG-AATAA-TGAGTTTGGTTTTC-AAGGGGTT--- 321
* ****** ***** *********** ***** ***** ** *** * *** *
consensus_6362#1 TCTNCACNCTCNGCTACTGGTCNCANNACTTACNAGTAAGAAGCTTGCCTTATTTACGTA 576
consensus_6362#3 --TACANT---TGCTA-TGGTCTCGACCTTATTCCGTANAGAAGTTGCCTT-TTTACGTA 557
consensus_6362#0 -------TTTTTGCTA-TGTTTT-----TCTTTTTGTAAGAAG-TTGCCTT-TTTACGTA 563
consensus_6362#2 -------TTTTTGCTA-TGTTTT-----TCTTTTTGTAAGAAG-TTGCCTT-TTTACGTA 366
**** ** * *** * ******* ********
consensus_6362#1 CGCTTATCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGCAGNCCGC 636
consensus_6362#3 CGCTT-TCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACG--AGCCG- 613
consensus_6362#0 CGCTT-TCGAATCGGTCAGGATGAACAAAAACGGACTACTATCCTGAACACA--AGCCAC 620
consensus_6362#2 CGCTT-TCGAATCGGTCAGGATGAACAAAAACGGACTATTATCCTGAACACA--AGCCAC 423
***** ************************* ****** ******* **** **
consensus_6362#1 CGACCCT----------------------------------------------------- 643
consensus_6362#3 ------------------------------------------------------------
consensus_6362#0 CGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTG 680
consensus_6362#2 CGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTG 483
consensus_6362#1 ------------------------------------------------------------
consensus_6362#3 ------------------------------------------------------------
consensus_6362#0 ATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACAC 740
consensus_6362#2 ATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACAC 543
consensus_6362#1 ------------------------------------------------------------
consensus_6362#3 ------------------------------------------------------------
consensus_6362#0 GAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACAAAAAAAAACAAAACTTGT 800
consensus_6362#2 GAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACTAAAAAANTACAAACAAAA 603
consensus_6362#1 -------------------------------
consensus_6362#3 -------------------------------
consensus_6362#0 GTACTGTGAAACAGGCCACAAAAATAAACTT 831
consensus_6362#2 NGCCGGCATGTGC------------------ 616
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||