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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence
[ACCAACCTACAAACCAAAGAAACCTTCCCAAAATGATGAAGATCACGGTCGTCACCCTCGCCCTGCTGGCCGTAGCCGTTACTGCTTACGAGCATGAGGACTATCATTCGCATCCCAGCTACAAGTTCGAATATTGCGTAAAAGATCCTCACACCGGAGACCACAAGAGCCAGTGGGAACATCGGGATGGTGATGTCGTCAAGGGACAGTACACTCTGTTTGAAGCCGATGGAACCAAGCGAGTGGTTGAGTACTCGTCCGACAAGCACAACGGCTTCCAGGCTCACGTCAAGCGTGTGGGTCATGCTCACCACCCGGAAGTGTATGGACAACATGAGGCTGGACACTCGTACAGCCATGGACATGGCAGCAGCTACGCCAACGGCAACCTGTACCAGCACCATCACTAAAGAACATTTGTGAATAAATGAAGTTGAATTGCTAAAGATATTTGGTTTTAATTTTAGGTGCTGTATTTTTCCCTGTTTTGTTGAACAATTTTCGTTTCATTAGCAAGAAATGCACATTTTTATGTAGTGTTTGTGTTTGAATTTTTTGTGAACATTGCCCTAATGATATCAACAACTATCCGACCATCGTTAGAACTAATCACATATATGAGAACGCTAGTTGTTAAACGTGTGTTTAGAAATACTGTGATAAATTTGTTGCGTTTAATAGTAGCCAAGATCAATAAGGCTTTAAAATTCCAAGCTGACTGTTATATATGTGCATGTGTTCAACTGTCTTCCTTTATGATTTGATCA]
[+] EMBL BX627752 [ACCAACCTACAAACCAAAGAAACCTTCCCAAAATGATGAAGATCACGGTCGTCACCCTCGCCCTGCTGGCCGTAGCCGTTACTGCTTACGAGCATGAGGACTATCATTCGCATCCCAGCTACAAGTTCGAATATTGCGTAAAAGATCCTCACACCGGAGACCACAAGAGCCAGTGGGAACATCGGGATGGTGATGTCGTCAAGGGACAGTACACTCTGTTTGAAGCCGATGGAACCAAGCGAGTGGTTGAGTACTCGTCCGACAAGCACAACGGCTTCCAGGCTCACGTCAAGCGTGTGGGTCATGCTCACCACCCGGAAGTGTATGGACAACATGAGGCTGGACACTCGTACAGCCATGGACATGGCAGCAGCTACGCCAACGGCAACCTGTACCAGCACCATCACTAAAGAACATTTGTGAATAAATGAAGTTGAATTGCTAAAGATATTTGGTTTTAATTTTAGGTGCTGTATTTTTCCCTGTTTTGTTGAACAATTTTCGTTTCATTAGCAAGAAATGCACATTTTTATGTAGTGTTTGTGTTTGAATTTTTTGTGAACATTGCCCTAATGATATCAACAACTATCCGACCATCGTTAGAACTAATCACATATATGAGAACGCTAGTTGTTAAACGTGTGTTTAGAAATACTGTGATAAATTTGTTGCGTTTAATAGTAGCCAAGATCAATAAGGCTTTAAAATTCCAAGCTGACTGTTATATATGTGCATGTGTTCAACTGTCTTCCTTTATGATTTGATCA]
consensusID : consensus_6374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence
[GAATCCCCGAGGTTTNAGTGATCGAAAGAAAAACAAAGCAAAATAAAATGATGAAGATCACGATCGCCGCCCTCGCCCTGCTGGCCGTAGCCGTTGCTGCTTACGAGCATGAGTGACTATCATTCGCATCCCAGCTACAAGTTCGAGTATGGAGTAAAGGATCCTCACACCGGAGACCACAAGAGCCAGTGGGAACATCGGGATGGAGATGTCGTCAAGGGACAGTACACTCTGGATGAAGCCGACGGAACCAAGCGAGTGGTTGAGTACTCGTACCTGATAAGCACAACGGCTTCCAGGCTCACGTCAAGCGAGTGGGTCATGCTGATCACCCGGCCGTCTATGGACACCATGAGGCTGGACACTCGTACAGCCATGGACACAGGCATGGACATGGCAGCAG-TACGCCAACGGCAACCTGTACCAGCATCATCATTGATAGCTATCTGTGCATAGTACCG-TTCAGTTCCTGTAAATACGAATGACATAANAGTANACCTTTACAGTCTATACATTTGCGTATTTTGTTTGCTACAATCAATCTACATTTTATAGGAACACTTAGACATTTTCATCATAAACTTTCTTTGGTTTGATAGTCTGTGCTTTCTTTACCCAAGCGATATCGGAAATGTATATTTTTGCAGCGCATTATAAATATTGTTTTTGGTATAGAATAATTTACCGATTATAGTTTACTTCACTTTTGTTTGACTAAGGATTCATAAATAATTACCATC]
[+] EMBL AL932034 [GAATCCCCGAGGTTTNAGTGATCGAAAGAAAAACAAAGCAAAATAAAATGATGAAGATCACGATCGCCGCCCTCGCCCTGCTGGCCGTAGCCGTTGCTGCTTACGAGCATGAGTGACTATCATTCGCATCCCAGCTACAAGTTCGAGTATGGAGTAAAGGATCCTCACACCGGAGACCACAAGAGCCAGTGGGAACATCGGGATGGAGATGTCGTCAAGGGACAGTACACTCTGGATGAAGCCGACGGAACCAAGCGAGTGGTTGAGTACTCGTACCTGATAAGCACAACGGCTTCCAGGCTCACGTCAAGCGAGTGGGTCATGCTGATCACCCGGCCGTCTATGGACACCATGAGGCTGGACACTCGTACAGCCATGGACACAGGCATGGACATGGCAGCAG TACGCCAACGGCAACCTGTACCAGCATCATCATTGATAGCTATCTGTGCATAGTACCG TTCAGTTCCTGTAAATACGAATGACATAANAGTANACCTTTACAGTCTATAC ]
[+] EMBL BX627445 [ AGATCACGATCGCCGCCCTCGCCCTGCTGGCCGTCGCCGTTGCTGCTTACGAGCATGAG GACTATCATTCGCATCCCAGCTACAAGTTCGAGTATGGAGTAAAGGATCCTCACACCGGAGACCACAAGAGCCAGTGGGAACATCGGGATGGAGATGTCGTCAAGGGACAGTACACTCTGGATGAAGCCGACGGAACCAAGCGAGTGGTTGAGTACTCGT CC GATAAGCACAACGGCTTCCAGGCTCACGTCAAGCGAGTGGGTCATGCTGATCACCCGGCCGTCTATGGACACCATGAGGCTGGACACTCGTACAGCCATGGACACGGCCATGGACATGGCAGCAGCTACGCCAACGGCAACCTGTACCAGCATCATCATTGATAGCTATCTGTG ATAGTTCCGTTTCAGTTCCTGTAAATACGAATGA ATAA AGT TACCTTTTCAGT TATAAATTTGCGTATTTTGTTTGCTACAATCAATCTACATTTTATAGGAACACTTAGACATTTTCATCATAAACTTTCTTTGGTTTGATAGTCTGTGCTTTCTTTACCCAAGCGATATCGGAAATGTATATTTTTGCAGCGCATTATAAATATTGTTTTTGGTATAGAATAATTTACCGATTATAGTTTACTTCACTTTTGTTTGACTAAGGATTCATAAATAATTACCATC]
consensusID : consensus_6374#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[CAGTAGCCAAAGCCAACTAACCAAATCACTTCTTTAGCAAAGATGTTCAAGATCATCGCACTGACTGTCGCCTGTTTGGCTGTAGCTGCTTCGGCTCAATACTGGGGCGGATCTGGATATGGATACGGTGCGGAGCATCATGGCCATCACGATTACTATTCACATCCTAGTTACAAGTTCGAGTACGGTGTGAAGGATCCTCACACCGGAGACCACAAGAGCCAGTGGGAACATCGCGACGGAGATGTCGTCAAGGGAGCGTACACCCTGCACGAGGCCGACGGAACTGAACGAGTGGTTGAGTACTCGTCCGACAAGCACAACGGCTTCCAAGCTCATGTGAAGCGAGTGGGTCATGCTCATCATCCTCAAGTGTATGGACATCACGGAGGATACTATGGAGGATACGGTCATGGCTCGGGCTACAGCTACAGCAAGTTGGACCAGCATTTCTAAGTTATTGTTGATTTTGCTAAATCAGAATCGGCGCTATGTGTTTGGTTGATTGTTCCTGAATAAATCCATTGTTAACG]
[+] EMBL BX621784 [CAGTAGCCAAAGCCAACTAACCAAATCACTTCTTTAGCAAAGATGTTCAAGATCATCGCACTGACTGTCGCCTGTTTGGCTGTAGCTGCTTCGGCTCAATACTGGGGCGGATCTGGATATGGATACGGTGCGGAGCATCATGGCCATCACGATTACTATTCACATCCTAGTTACAAGTTCGAGTACGGTGTGAAGGATCCTCACACCGGAGACCACAAGAGCCAGTGGGAACATCGCGACGGAGATGTCGTCAAGGGAGCGTACACCCTGCACGAGGCCGACGGAACTGAACGAGTGGTTGAGTACTCGTCCGACAAGCACAACGGCTTCCAAGCTCATGTGAAGCGAGTGGGTCATGCTCATCATCCTCAAGTGTATGGACATCACGGAGGATACTATGGAGGATACGGTCATGGCTCGGGCTACAGCTACAGCAAGTTGGACCAGCATTTCTAAGTTATTGTTGATTTTGCTAAATCAGAATCGGCGCTATGTGTTTGGTTGATTGTTCCTGAATAAATCCATTGTTAACG]
consensusID : consensus_6374#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[GCCTGTCTGGCTGTGGTTGCTTCCGCCCAGTACTACGGAGGAGAACACGGTCTCAGCGGATACGCTCATCATCACGAGGAGCCCAAGGACTACTACGCGTACCCGAAGTACAAGTTCGAGTACGGTGTGAAGGATCCCCACACCGGTGACCACAAGAGCCAGTGGGAAGTGCGTGATGGCGATGTCGTCAAGGGACAGTACTCGCTGCATGAGGCTGACGGTACCGAGCGCGTCGTCGAGTACAAGTCGGACAAGCACAGCGGTTTCGAAGCCGTCGTGAAGAAGGTCGGCCATGCCCATCACCCGCAGGTGTACGGTGGACACCACTACTAGGAACCTTTACTGCCGTGCTCCTTCGTTCTACGAAGGAGGTTTAGTCCAAATGTCCTGTCCGCTGCATCTGGCTGCATCTACGTTAGAGCTGGAGCATTTTTTCCTAACCCCGAATGTGATATCTAAACTGAGCTCAACTCAAACCTCAACAAGCCTAAAAAACACCCAGAAATATAGTACTG]
[+] EMBL BX625207 [GCCTGTCTGGCTGTGGTTGCTTCCGCCCAGTACTACGGAGGAGAACACGGTCTCAGCGGATACGCTCATCATCACGAGGAGCCCAAGGACTACTACGCGTACCCGAAGTACAAGTTCGAGTACGGTGTGAAGGATCCCCACACCGGTGACCACAAGAGCCAGTGGGAAGTGCGTGATGGCGATGTCGTCAAGGGACAGTACTCGCTGCATGAGGCTGACGGTACCGAGCGCGTCGTCGAGTACAAGTCGGACAAGCACAGCGGTTTCGAAGCCGTCGTGAAGAAGGTCGGCCATGCCCATCACCCGCAGGTGTACGGTGGACACCACTACTAGGAACCTTTACTGCCGTGCTCCTTCGTTCTACGAAGGAGGTTTAGTCCAAATGTCCTGTCCGCTGCATCTGGCTGCATCTACGTTAGAGCTGGAGCATTTTTTCCTAACCCCGAATGTGATATCTAAACTGAGCTCAACTCAAACCTCAACAAGCCTAAAAAACACCCAGAAATATAGTACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6374#2 CAGTAGCCAAAGCCAACTAACCAAATCACTTCTTTAGCAAAGATGTTCAAGATCATCGCA 60
consensus_6374#3 ------------------------------------------------------------
consensus_6374#0 ------------------------------------------------------------
consensus_6374#1 ----------------------------------------------GAATCCCCGAGGTT 14
consensus_6374#2 CTGACTGTCGCCTGTTTGGCTGTAGCTGCTTC---GGCTCAATACT---GGGGCGGATCT 114
consensus_6374#3 ---------GCCTGTCTGGCTGTGGTTGCTTC---CGCCCAGTACTACGGAGGAGAACAC 48
consensus_6374#0 --ACCAACCTACAAACCAAAGAAACCTTCCCAAAATGATGAAGATCACGGTCGTCACCCT 58
consensus_6374#1 TNAGTGATCGA-AAGAAAAACAAAGCAAAATAAAATGATGAAGATCACGATCGCCGCCCT 73
* * * *
consensus_6374#2 GGAT---ATGGATACGGTGCGGAGCATC-ATGGCCATCAC-GATTACTATTCACATCCTA 169
consensus_6374#3 GGTCTCAGCGGATACGCTCATCATCACG-AGGAGCCCAAG-GACTACTACGCGTACCCGA 106
consensus_6374#0 CGCCCTGCTGGCCGTAGCCGTTACTGCTTACGAGCATGAG-GACTATCATTCGCATCCCA 117
consensus_6374#1 CGCCCTGCTGGCCGTAGCCGTTGCTGCTTACGAGCATGAGTGACTATCATTCGCATCCCA 133
* ** * * * * ** ** * * * ** *
consensus_6374#2 GTTACAAGTTCGAGTACGGTGTGAAGGATCCTCACACCGGAGACCACAAGAGCCAGTGGG 229
consensus_6374#3 AGTACAAGTTCGAGTACGGTGTGAAGGATCCCCACACCGGTGACCACAAGAGCCAGTGGG 166
consensus_6374#0 GCTACAAGTTCGAATATTGCGTAAAAGATCCTCACACCGGAGACCACAAGAGCCAGTGGG 177
consensus_6374#1 GCTACAAGTTCGAGTATGGAGTAAAGGATCCTCACACCGGAGACCACAAGAGCCAGTGGG 193
*********** ** * ** ** ***** ******** *******************
consensus_6374#2 AACATCGCGACGGAGATGTCGTCAAGGGAGCGTACACCCTGCACGAGGCCGACGGAACTG 289
consensus_6374#3 AAGTGCGTGATGGCGATGTCGTCAAGGGACAGTACTCGCTGCATGAGGCTGACGGTACCG 226
consensus_6374#0 AACATCGGGATGGTGATGTCGTCAAGGGACAGTACACTCTGTTTGAAGCCGATGGAACCA 237
consensus_6374#1 AACATCGGGATGGAGATGTCGTCAAGGGACAGTACACTCTGGATGAAGCCGACGGAACCA 253
** ** ** ** *************** **** * *** ** ** ** ** **
consensus_6374#2 AACGAGTGGTTGAGTACTCGT--CCGACAAGCACAACGGCTTCCAAGCTCATGTGAAGCG 347
consensus_6374#3 AGCGCGTCGTCGAGTACAAGT--CGGACAAGCACAGCGGTTTCGAAGCCGTCGTGAAGAA 284
consensus_6374#0 AGCGAGTGGTTGAGTACTCGT--CCGACAAGCACAACGGCTTCCAGGCTCACGTCAAGCG 295
consensus_6374#1 AGCGAGTGGTTGAGTACTCGTACCTGATAAGCACAACGGCTTCCAGGCTCACGTCAAGCG 313
* ** ** ** ****** ** * ** ******* *** *** * ** ** ***
consensus_6374#2 AGTGGGTCATGCTCATCATCCTCAAGTGTA---TGGACATCACGG----AGGA-----TA 395
consensus_6374#3 GGTCGGCCATGCCCATCACCCGCAGGTGTACGGTGGACACCACTAC--TAGGAACCTTTA 342
consensus_6374#0 TGTGGGTCATGCTCACCACCCGGAAGTGTA---TGGACAACATGAGGCTGGACACTCGTA 352
consensus_6374#1 AGTGGGTCATGCTGATCACCCGGCCGTCTA---TGGACACCATGAGGCTGGACACTCGTA 370
** ** ***** * ** ** ** ** ****** ** * **
consensus_6374#2 CTATGGAGGA---------TACGGTCATGGCTCGGGCTACAGCTACAGCAAGTTGGACCA 446
consensus_6374#3 CTGCCGTGCTCCTTCGTTCTACGAAGGAGGTTTAGTCCAAATGTCCTGTCCGCTGCATCT 402
consensus_6374#0 CAGCCATGGACA---------------TGGCAGCAGCTACGCCAACGGCAACCTGTACCA 397
consensus_6374#1 CAGCCATGGACACAGG---CATGGACATGGCAGCAG-TACGCCAACGGCAACCTGTACCA 426
* * ** * * * ** * *
consensus_6374#2 G---CATTTCTAAGTTATTGTTGA------TTTTGCTAAATCA----GAATCGGCGCTAT 493
consensus_6374#3 GG-CTGCATCTACGTTAGAGCTGGAGCATTTTTTCCTAACCCC----GAATGTGATATCT 457
consensus_6374#0 GCACCATCACTAAAGAACATTTGTGAATAA----ATGAAGTTG----AATTGCTAAAGAT 449
consensus_6374#1 GCATCATCATTGATAGCTATCTGTGCATAGTACCGTTCAGTTCCTGTAAATACGAATGAC 486
* * ** * * *
consensus_6374#2 GTGTTTGGTTGA--TTG-TTCCTGAATAAATCCATTGTTAACG----------------- 533
consensus_6374#3 AAACTGAGCTCAACTCA-AACCTCAACAAGCCTAAAAAACACCCAGAAATATAGTACTG- 515
consensus_6374#0 ATTTGGTTTTAATTTTAGGTGCTGTATTTTTCCCTGTTTTGTT------GAACAATTTTC 503
consensus_6374#1 ATAANAGTANACCTTTACAGTCTATACATTTGCGTATTTTGTTTGCTACAATCAATCTAC 546
* ** *
consensus_6374#2 ------------------------------------------------------------
consensus_6374#3 ------------------------------------------------------------
consensus_6374#0 GTTTCATTAGCAAGAAATGCACATTTTTAT-GTAGTGTTTGT---GTTTGA-ATTTTTTG 558
consensus_6374#1 ATTTTAT-AGGAACACTTAGACATTTTCATCATAAACTTTCTTTGGTTTGATAGTCTGTG 605
consensus_6374#2 ------------------------------------------------------------
consensus_6374#3 ------------------------------------------------------------
consensus_6374#0 TGAACATTGCCCTAATGATATCAACAACTATCCGACCATCGTTAGAACTAATCACATATA 618
consensus_6374#1 CTTTCTTTACCCAAGCGATATCGGAAAT-----GTATATTTTTGCAGCGCATTATAAATA 660
consensus_6374#2 ------------------------------------------------------------
consensus_6374#3 ------------------------------------------------------------
consensus_6374#0 TGAGAACGCTAGTTGTTAAACGTGTGTTTAGAAATACTGTGATAAATTTGTTGCGTTTAA 678
consensus_6374#1 TTG------TTTTTGGTATAGAATAATTTACCGATTATAGTTTACTTCACTTTTGTTTGA 714
consensus_6374#2 ------------------------------------------------------------
consensus_6374#3 ------------------------------------------------------------
consensus_6374#0 TAGTAGCCAAGATCAATAAGGCTTTAAAATTCCAAGCTGACTGTTATATATGTGCATGTG 738
consensus_6374#1 CTA-----AGGATTCATAAATAATTACCATC----------------------------- 740
consensus_6374#2 -----------------------------
consensus_6374#3 -----------------------------
consensus_6374#0 TTCAACTGTCTTCCTTTATGATTTGATCA 767
consensus_6374#1 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||