cluster # 6381

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Anopheles gambiae
cluster # 6381 cluster # 6381 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6381#0 length = 811 sequences # 4

consensus_6381#1 length = 159 sequences # 1

consensusID : consensus_6381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 811
fasta sequence

                              [TTGATCGTAGGCGGCTACTACTGCTACAACAATCACATCTCTTACTTCGGGCGATACGGCACTACGGCTTCACACGCTCACGCCGATCTTATTAAAGTAGGCTTACAACGCGACTTGTTTGTATCAGATAGTAACCGAATATTCAGTCACACGGTCCCTGTTGCACCGGAGGGAGGTTCACTGTTCACAGATAGAACCATCGATCCTAAGGCTGCGGGATTTTACAAGAATCAGCACGTCTAGCATTAGAACGGCTAGCTCGGCTGTGGTTCAAAATTTGTTCACTCGTCACCATGCATCCTTTGCATCTAACAGCAACAGCAGCAGCATGTCTATATTGTTTGCTTACATGTAATGTTGATTGGAGGAGTGATGGTTAAAATTTTAGTATTTATTTTTTATACCGTTTCTGGTAGAACTTACCGTTATGCTATACGTAGCGAGCTTGACTGAAACAGTTCAGATTCGCTTCGTCTCGTCTGCTCTCTCTTTCTATTACCAAATGCGTTGCGCTTAACGTATCTGAACACACTCTCGCCGTTTGATAATGGGCAGGCACGTGGTAAATGTTTGGAGCTAATTATTCACAATGAAATTTGAACAATGCCAACCAAGGACTATCGTTGCATTTTTATGTTTTACCGATGGTGTGATATTCTTCTTCTTTGGCGCAATGCAACCGTTACAAGCCGAGGCCTGCCTGTACCACGTTGTACCACGTTGCAAAGGCGTTTTGAAAAGCGTAGCAGGCGATGAGAAACAACAGGGGGGGTTGCTTATTAAAATCCTGAATATCTGATCCGTTTGGGTA]

[+] EMBL BX609005             [TTGATCGTAGGCGGCTACTACTGCTACAACAATCACATCTCTTACTTCGGGCGATACGGCACTACGGCTTCACACGCTCACGCCGATCTTATTAAAGTAGGCTTACAACGCGACTTGTTTGTATCAGATAGTAACCGAATATTCAGTCACACGGTCCCTGTTGCACCGGAGGGAGGTTCACTGTTCACAGATAGAACCATCGATCCTAAGGCTGCGGGATTTTACAAGAATCAGCACGTCTAGCATTAGAACGGCTAGCTCGGCTGTGGTTCAAAATTTGTTCACTCGTCACCATGCATCCTTTGCATCTAACAGCAACAGCAGCAGCATGTCTATATTGTTTGCTTACATGTAATGTTGATTGGAGGAGTGATGGTTAAAATTTTAGTATTTATTTTTTATACCGTTTCTGGTAGAACTTACCGTTATGCTATACGTAGCGAGCTTGACTGAAACAGTTCAGATTCGCTTCGTCTCGTCTGCTCTCTCTTTCTATTACCAAATGCGTTGCGCTTAACGTATCTGAACACACTCTCGCCGTTTGATAATGGGCAGGCACGTGGTAAATGTTTGGAGCTAATTATTCACAATGAAATTTGAACAATGCCAACCAA                                                                                                                                                                                                     ]
[+] EMBL BX608790             [                                                                             TCACGCCGATCTTATTAAAGTAGGCTTACAACGCGACTTGTTTGTATCAGATAGTAACCGAATATTCAGTCACACGGTCCCTGTTGCACCGGAGGGAGGTTCACTGTTCACAGATAGAACCATCGATCCTAAGGCTGCGGGATTTTACAAGAATCAGCACGTCTAGCATTAGAACGGCTAGCTCGGCTGTGGTTCAAAATTTGTTCACTCGTCACCATGCATCCTTTGCATCTAACAGCAACAGCAGCAGCATGTCTATATTGTTTGCTTACATGTAATGTTGATTGGAGGAGTGATGGTTAAAATTTTAGTATTTATTTTTTATACCGTTTCTGGTAGAACTTACCGTTATGCTATACGTAGCGAGCTTGACTGAAACAGTTCAGATTCGCTTCGTCTCGTCTGCTCTCTCTTTCTATTACCAAATGCGTTGCGCTTAACGTATCTGAACACACTCTCGCCGTTTGATAATGGGCAGGCACGTGGTAAATGTTTGGAGCTAATTATTCACAATGAAATTTGAACAATGCCAACCAAGGACTATCGTTGCATTTTTATGTTTTACCGATGGTGTGATATTCTTCTTCTTTGGCGCAATGCAACCGTTACAAGCCGAGGCCTGCCTGTACCACGTT                                                                                                   ]
[+] EMBL BX613558             [                                                                                                                ACTTGTTTGTATCAGATAGTAACCGAATATTCAGTCACACGGTCCCTGTTGCACCGGAGGGAGGTTCACTGTTCACAGATAGAACCATCGATCCTAAGGCTGCGGGATTTTACAAGAATCAGCACGTCTAGCATTAGAACGGCTAGCTCGGCTGTGGTTCAAAATTTGTTCACTCGTCACCATGCATCCTTTGCATCTAACAGCAACAGCAGCAGCATGTCTATATTGTTTGCTTACATGTAATGTTGATTGGAGGAGTGATGGTTAAAATTTTAGTATTTATTTTTTATACCGTTTCTGGTAGAACTTACCGTTATGCTATACGTAGCGAGCTTGACTGAAACAGTTCAGATTCGCTTCGTCTCGTCTGCTCTCTCTTTCTATTACCAAATGCGTTGCGCTTAACGTATCTGAACACACTCTCGCCGTTTGATAATGGGCAGGCACGTGGTAAATGTTTGGAGCTAATTATTCACAATGAAATTTGAACAATGCCAACCAAGGACTATCGTTGCATTTTTATGTTTTACCGATGGTGTGATATTCTCCTTCTTTGGCGCAATGCAACCGTTACAAGCCGAGGCCTGCCTGTACCACGTTGTACCACGTTGCAAAGGCGTTTTGAAAAGCGTAGCAGGCGATGAGAAACAACAGGGGGGGTTGCTTATTAAAATCCTGAATATCTGATCCGTTTGGGTA]
[+] EMBL BX614739             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CACACTCTCGCCGTTTGAGAATGGGCAGGCACGTGGTAAAGGTTTGGAGCTAATTATTCACAATGAAATTTGAACAATGCCAACCAAGGACTATCGTTGCATTTT                                                                                                                                                                                   ]




>consensus_6381#0
TTGATCGTAGGCGGCTACTACTGCTACAACAATCACATCTCTTACTTCGGGCGATACGGC
ACTACGGCTTCACACGCTCACGCCGATCTTATTAAAGTAGGCTTACAACGCGACTTGTTT
GTATCAGATAGTAACCGAATATTCAGTCACACGGTCCCTGTTGCACCGGAGGGAGGTTCA
CTGTTCACAGATAGAACCATCGATCCTAAGGCTGCGGGATTTTACAAGAATCAGCACGTC
TAGCATTAGAACGGCTAGCTCGGCTGTGGTTCAAAATTTGTTCACTCGTCACCATGCATC
CTTTGCATCTAACAGCAACAGCAGCAGCATGTCTATATTGTTTGCTTACATGTAATGTTG
ATTGGAGGAGTGATGGTTAAAATTTTAGTATTTATTTTTTATACCGTTTCTGGTAGAACT
TACCGTTATGCTATACGTAGCGAGCTTGACTGAAACAGTTCAGATTCGCTTCGTCTCGTC
TGCTCTCTCTTTCTATTACCAAATGCGTTGCGCTTAACGTATCTGAACACACTCTCGCCG
TTTGATAATGGGCAGGCACGTGGTAAATGTTTGGAGCTAATTATTCACAATGAAATTTGA
ACAATGCCAACCAAGGACTATCGTTGCATTTTTATGTTTTACCGATGGTGTGATATTCTT
CTTCTTTGGCGCAATGCAACCGTTACAAGCCGAGGCCTGCCTGTACCACGTTGTACCACG
TTGCAAAGGCGTTTTGAAAAGCGTAGCAGGCGATGAGAAACAACAGGGGGGGTTGCTTAT
TAAAATCCTGAATATCTGATCCGTTTGGGTA

consensusID : consensus_6381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [CGTCTGCTCTCTCTTTCAATTACCAAATGCGTTGCGCTAAACGAATCGGAACACACTCTCGCCGTTTGAGAATGGGCAGGCACGTGGAAAAGGTTGGGAGCAAATTATTCACAAGGAAATTTGAACAATGCCAACCAAGGACGATCGTGGCATGATTAG]

[+] EMBL BX611367             [CGTCTGCTCTCTCTTTCAATTACCAAATGCGTTGCGCTAAACGAATCGGAACACACTCTCGCCGTTTGAGAATGGGCAGGCACGTGGAAAAGGTTGGGAGCAAATTATTCACAAGGAAATTTGAACAATGCCAACCAAGGACGATCGTGGCATGATTAG]




>consensus_6381#1
CGTCTGCTCTCTCTTTCAATTACCAAATGCGTTGCGCTAAACGAATCGGAACACACTCTC
GCCGTTTGAGAATGGGCAGGCACGTGGAAAAGGTTGGGAGCAAATTATTCACAAGGAAAT
TTGAACAATGCCAACCAAGGACGATCGTGGCATGATTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6381#0      TTGATCGTAGGCGGCTACTACTGCTACAACAATCACATCTCTTACTTCGGGCGATACGGC 60
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      ACTACGGCTTCACACGCTCACGCCGATCTTATTAAAGTAGGCTTACAACGCGACTTGTTT 120
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      GTATCAGATAGTAACCGAATATTCAGTCACACGGTCCCTGTTGCACCGGAGGGAGGTTCA 180
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      CTGTTCACAGATAGAACCATCGATCCTAAGGCTGCGGGATTTTACAAGAATCAGCACGTC 240
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      TAGCATTAGAACGGCTAGCTCGGCTGTGGTTCAAAATTTGTTCACTCGTCACCATGCATC 300
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      CTTTGCATCTAACAGCAACAGCAGCAGCATGTCTATATTGTTTGCTTACATGTAATGTTG 360
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      ATTGGAGGAGTGATGGTTAAAATTTTAGTATTTATTTTTTATACCGTTTCTGGTAGAACT 420
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      TACCGTTATGCTATACGTAGCGAGCTTGACTGAAACAGTTCAGATTCGCTTCGTCTCGTC 480
consensus_6381#1      --------------------------------------------------------CGTC 4
                                                                              ****

consensus_6381#0      TGCTCTCTCTTTCTATTACCAAATGCGTTGCGCTTAACGTATCTGAACACACTCTCGCCG 540
consensus_6381#1      TGCTCTCTCTTTCAATTACCAAATGCGTTGCGCTAAACGAATCGGAACACACTCTCGCCG 64
                      ************* ******************** **** *** ****************

consensus_6381#0      TTTGATAATGGGCAGGCACGTGGTAAATGTTTGGAGCTAATTATTCACAATGAAATTTGA 600
consensus_6381#1      TTTGAGAATGGGCAGGCACGTGGAAAAGGTTGGGAGCAAATTATTCACAAGGAAATTTGA 124
                      ***** ***************** *** *** ***** ************ *********

consensus_6381#0      ACAATGCCAACCAAGGACTATCGTTGCATTTTTATGTTTTACCGATGGTGTGATATTCTT 660
consensus_6381#1      ACAATGCCAACCAAGGACGATCGTGGCATGATTAG------------------------- 159
                      ****************** ***** ****  ***                          

consensus_6381#0      CTTCTTTGGCGCAATGCAACCGTTACAAGCCGAGGCCTGCCTGTACCACGTTGTACCACG 720
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      TTGCAAAGGCGTTTTGAAAAGCGTAGCAGGCGATGAGAAACAACAGGGGGGGTTGCTTAT 780
consensus_6381#1      ------------------------------------------------------------
                                                                                  

consensus_6381#0      TAAAATCCTGAATATCTGATCCGTTTGGGTA 811
consensus_6381#1      -------------------------------