These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 868 fasta sequence [GAATCCCCCCGAGGTTANATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATCCTACCAACGTTGACATCGCGCTCGTAATACGCCACGCGCTGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCTCGCCGAAACGCCAAGCTCACCACCAGCATCCGCAGTCTGGTGCGATTGGTGCGCGTTCGAAAACGGCCGAACTGCCGCAACTGAAGTATTCCACACTGCCAGCCGTTCATCAGCGCCGCGGACAGGTCGTGGTGGATGATCATCCGCTTCGAGCAGCTGCTGCCGCAACGGGGATC-GACGATCGACAGCGAACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACGGCAGTCGAGCTGCGCCAGGTGGCCCATCAAGCCACTAAGAAAGCGATCACGGACTCCTCCCAAATGGAAGTTCGTGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCCCGAGCTGTTGCG-GATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGG-CAACGAATCCCGCGGGCGAGCTGCAGCAATCGCTCGAAGGGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACGATACCGTGTTTCGCGTACCGGCACCGATCGATCCCGCTACCGAAGCGAACGAAGAGCCGCAAAAGGCCAGAAAACCGTTGCCGGGCGTGGCGAAGTTGGTGCTGAGCGAACAGCAGGCACAGCAACAGCAGTTGCAGCCGCACCATCCTAGCAACGTACAGCGCACGCAAACGCCACCCAGC] [+] EMBL AL932609 [GAATCCCCCCGAGGTTANATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATCCTACCAACGTTGACATCGCGCTCGTAATACGCCACGCGCTGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCTCGCCGAAACGCCAAGCTCACCACCAGCATCCGCAGTCTGGTGCGATTGGTGCGCGTTCGAAAACGGCCGAACTGCCGCAACTGAAGTATTCCACACTGCCAGCCGTTCATCAGCGCCGCGGACAGGTCGTGGTGGATGATCATCCGCTTCGAGCAGCTGCTGCCGCAACGGGGATC GACGATCGACAGCGAACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACTGCAGTCGAGCTGCGCCAGGTGGCCCATCAAGCCACTAAGAAAGCGATCACGGACTCCTCCCAAATGGAAGTTCGTGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCCCGAGCTGTTGCG GATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGTAACATCCGG C AC AATCCCG ] [+] EMBL BM587557 [ ccgAGCATCCGCAGTCTGGTGCGATTGGTGCGCGTTCGAAAACGGCCGAACTGCCGCAACTGAAGTATTCCACACTGCCAGCCGTTCATCAGCGCCGCGGACAGGTCGTGGTGGATGATCATCCGCTTCGAGCAGCTGCTGCCGCAACGGGGATC GACGATCGACAGCGAACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACGGCAGTCGAGCTGCGCCAGGTGGCCCATCAAGCCACTAAGAAAGCGATCACGGACTCCTCCCAAATGGAAGTTCGTGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCCCGAGCTGTTGCG GATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGGCCAACGAATCCCGCGGGCGAGCTGCAGCAATCGCTCGAAGGGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACGATACCGTGTTTCGCGTACCGGCACCGATCGATCCCGCTACCGAAGCGAACGAAGAGCCGCAAAAGGCCAGAAAACCGTTGCCGGGCGTGGCGAAGTTGGTGCTGAGCGAACAGCAGGCACAGCAACAGCAGTTGCAGCCGCACCATCCTAGCAACGTACAGCGCACGCAAACGCCACCCAGC] [+] EMBL AL694706 [ cgagttaaCGAACTG CG ACTGAAGTAT CACACTGCCAGCCGTTCATCAGCGCCGCGGACAGGTCGTGGTGGATGATCATCCGCTTCGAGCAGCTGCTGCCGCAACGGGGATCTGACGATCGACAGCGAACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACGGCAGTCGAGCTGCGCCAGGTGG CCATCAAGCCACTAA AAAGCGATCACGGACTCCTCCCAAATGGAAGTTCGTGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCCCGAGCTGTTGCGNGATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGG CAACGAATCCCGCGGGCGAGCTGCAGCAATCGCTCGAAGGGATAca ] consensusID : consensus_6384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [CAGAATCGCCCGAGGTGACGGTTACGACGGCTANCGTGAGGATGATCCCGAGCTGTTGCGGATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGGCCAACGAATCCCGCGGGCGAGCTGCAGCAATCTGCTCGAAGGGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACTGATACCGTGTTTCTGCGTACCTGGCACCTGATCGATCCCGCTACCGAAGCGAACGAAGAGCCTGCAAAAGGCCAGAAAACCGTTGCCGGGCTGTGTGCTGAAGTTGGTTGCTGAGCGAACAGCAGNGCACATGCAACAGCAGTTGCAGCCTGCACCATACCTAGCAACTGTACAGGCACGCAAACGCCACCCAGACAGCCTGAACCTCATGCGCTCGTACAACTATGATCTGGATTGTAGACGAAACAGTGCTTCACAGGCCGAACATCACGCAGTACGAAATCCCGGAGGATCGGTACAGGCANANAATAGNCGACAAAAAGCTCGCCAACCGGACAGGCAGGTACGAGANTGAACGCTGTTCAACNNAAACGGAATATATNCGANCCGCACCCGGACGAATNCCGAAACGCGGTGNGCACTTGCATCACCGGGGCATCCTGGNCCCAGACACNGGGAAAAATCCCNGGCTCCGGGNGAAACTTCGCGGACAACGGTCCGCNGGACATNNAACNAAATAATCATTGAACACTGAGTCCTCGCACGCCACCTTGTGTAATNGGATGCATGTAGTAGGN] [+] EMBL AL931279 [CAGAATCGCCCGAGGTGACGGTTACGACGGCTANCGTGAGGATGATCCCGAGCTGTTGCGGATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGGCCAACGAATCCCGCGGGCGAGCTGCAGCAATCTGCTCGAAGGGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACTGATACCGTGTTTCTGCGTACCTGGCACCTGATCGATCCCGCTACCGAAGCGAACGAAGAGCCTGCAAAAGGCCAGAAAACCGTTGCCGGGCTGTGTGCTGAAGTTGGTTGCTGAGCGAACAGCAGNGCACATGCAACAGCAGTTGCAGCCTGCACCATACCTAGCAACTGTACAGGCACGCAAACGCCACCCAGACAGCCTGAACCTCATGCGCTCGTACAACTATGATCTGGATTGTAGACGAAACAGTGCTTCACAGGCCGAACATCACGCAGTACGAAATCCCGGAGGATCGGTACAGGCANANAATAGNCGACAAAAAGCTCGCCAACCGGACAGGCAGGTACGAGANTGAACGCTGTTCAACNNAAACGGAATATATNCGANCCGCACCCGGACGAATNCCGAAACGCGGTGNGCACTTGCATCACCGGGGCATCCTGGNCCCAGACACNGGGAAAAATCCCNGGCTCCGGGNGAAACTTCGCGGACAACGGTCCGCNGGACATNNAACNAAATAATCATTGAACACTGAGTCCTCGCACGCCACCTTGTGTAATNGGATGCATGTAGTAGGN] consensusID : consensus_6384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [CCGGCATCACGGATGTCGTACCGACGGCGACCGGTTACTTCCCTGCGCAAACCCCGGGCAGCCCGATGAATTCCAGTCCGGCCGGTACTAAACGGAAGCCGGAAGTTGAGGTAGTGGAGCAGCTGAACTACATCAAGGACAAAATTCTCATCAAAGAAGATCTCCATCTGCACAACCATCTGCTCAAGCTCGACATTCCGTTGGCCATTTTTGGCATCCGATGGTTGCGTCTACTGTTTGGCCGGGAGTTTGCGCTACAAGACTTGCTGCTGCTGTGGGACGCAATATTCGGCGAAGGGGACGATCTCGGTCTGATTAACTACGTCGTCGTGGCGATGCTGATACGCATAAGAGATAAGTTAATTTATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATCCTACCAACGTTGACATCGCGCTCGTAATACGCCACGCGCTGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCCTCGCCGAAACGCCAAGCTCACCACCAGCAATCCGCAGTCTGGTGCGATTGGTGCGCGGTTCGAAAACGGCCGAACT] [+] EMBL BM619900 [CCGGCATCACGGATGTCGTACCGACGGCGACCGGTTACTTCCCTGCGCAAACCCCGGGCAGCCCGATGAATTCCAGTCCGGCCGGTACTAAACGGAAGCCGGAAGTTGAGGTAGTGGAGCAGCTGAACTACATCAAGGACAAAATTCTCATCAAAGAAGATCTCCATCTGCACAACCATCTGCTCAAGCTCGACATTCCGTTGGCCATTTTTGGCATCCGATGGTTGCGTCTACTGTTTGGCCGGGAGTTTGCGCTACAAGACTTGCTGCTGCTGTGGGACGCAATATTCGGCGAAGGGGACGATCTCGGTCTGATTAACTACGTCGTCGTGGCGATGCTGATACGCATAAGAGATAAGTTAATTTATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATCCTACCAACGTTGACATCGCGCTCGTAATACGCCACGCGCTGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCCTCGCCGAAACGCCAAGCTCACCACCAGCAATCCGCAGTCTGGTGCGATTGGTGCGCGGTTCGAAAACGGCCGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6384#0 GAATCCCCCCGAGGTTANATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATC 60 consensus_6384#1 ----------------------------CAGAATC-GCCCGAGGTGACGGTTACGACGGC 31 consensus_6384#2 -----------------------------------------------CCGGCATCACGGA 13 * * consensus_6384#0 CTAC-CAACGTTGACATCGCGCT------CGTAATACGCCACGCGCTGCACATGAAATCG 113 consensus_6384#1 TANCGTGAGGATGATCCCGAGCTGTTG--CGGATTGAGCTGCAGAATGCGTACAACATTA 89 consensus_6384#2 TGTCGTACCGACGGCGACCGGTTACTTCCCTGCGCAAACCCCGGGCAGCCCGATGAATT- 72 * * * * * * * * * ** ** consensus_6384#0 CCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCTCGCCGAAACGCCAA 173 consensus_6384#1 TGTCGGTCGGGCGGGCAA--AGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCG 147 consensus_6384#2 --CCAGTCCGGCCGGTACTAAACGGAAGCCGGAAGT-----TGAGGTAGTGGAGCAGCTG 125 * * * * * * * * * * * consensus_6384#0 GCTCACCACCAGCATCCGCAGTCTGGTGCGATTGGTGCGCGTTCGAAAACGGCCGAACTG 233 consensus_6384#1 GCCAACGAATCCCGCGGGCGAGCTGCAGCAATC--TGCTCGAAGGGATAGAGGAAATCTG 205 consensus_6384#2 AACTAC--ATCAAGGACAAAATTCTCATCAAA--------GAAGATCTCCATCTGCACAA 175 ** * * * * consensus_6384#0 C-CGCAACTGAAGTATTCCACACTGCCAG--CCGTTCATCAGCGCCGCGGACAGGTCGTG 290 consensus_6384#1 CTCACTGCTGAAA----CCACGCTACTGATACCGTGTTTCTGCGTACCTGGCA---CCTG 258 consensus_6384#2 CCATCTGCTCAAGCTCGACATTCCGTTGG--CCATTTTT----------GGCA---TCCG 220 * * ** ** ** * ** * * * ** * consensus_6384#0 GTGGATGATCAT-CCGCTTCGAGCAGCTGCTGCCGCAACGGGGATCGACGATCGACAGCG 349 consensus_6384#1 ATCGATCCCGCTACCGAAGCGAAC-GAAGAGCCTGCAA-AAGGCCAGAAAACCGTTGCCG 316 consensus_6384#2 ATGGTTGCGTCTACTG-TTTGGCCGGGAGTTTGCGCTACAAGACTTG----CTGCTGCTG 275 * * * * * * * * * * ** * * * * * consensus_6384#0 AACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACGGCAGTCGAGCTGCG 409 consensus_6384#1 GGCT-GTGTGCTGAAGTTGGTTGCTGAGCGAACAGCAGNGCACATGCAACAGCAGTTGCA 375 consensus_6384#2 TG---GGACGCAATATTCGGCGAAGGGGACGATCTCGGTCTGATTAACTACGTCGTCGTG 332 * * * * * * consensus_6384#0 CCAGGTGGCCCATCAAGCCACTAAGAAAGCGATCACGGACTCCTCCCAAATGGAAGTTCG 469 consensus_6384#1 GCCTGCACCATACCTAGCAACTGTACAGGCA--CGCAAACGCCACCCAGACAG----CCT 429 consensus_6384#2 GCGATGCTGATACGCATAAGAGATAAGTTAATTTATAGCGACTATACAACCTGCC-TTTC 391 * * * * ** * consensus_6384#0 TGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCC-CGAGCTGTTGCGGATTGAGC 528 consensus_6384#1 GAACCTCATGCGCTCGTACAACTATGATCTGGATTGTAGACGAAACAGTGCTTCACAGGC 489 consensus_6384#2 GTACCTGATGCGGT-ATCCTACCAACGTTGACATCGCGCTCG---TAATACGCCACGCGC 447 *** * * * * * * ** ** * * ** consensus_6384#0 TGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCG 588 consensus_6384#1 CGAACATCACGCAGTACGAAATCCCGGA-GGATCGGTACAGGCAN-ANAATAGNCGACAA 547 consensus_6384#2 TGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCC- 506 * * * * * * * ** * * consensus_6384#0 TGCTGCGGCGCAACATCCGG-CAACGAATCCCGCGGGCGAGCTGCAGCAATCGCTCGAAG 647 consensus_6384#1 AA----AGCTCGCCAACCGGACAGGCAGGTACGAGANTGAAC-GCTGTTCAACNNAAACG 602 consensus_6384#2 --------CTCGCCGAAACGCCAAGCTCAC-CACCAGCAATCCGCAGTCTGGTGCGATTG 557 * * * * ** * * * ** * * consensus_6384#0 GGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACGATACCGTGTTTCGCGTACCGG 707 consensus_6384#1 GAATATATNCGANCCGCACCCGGACGA----ATNCCGAAACGCGGTGNG-CACTTGC-AT 656 consensus_6384#2 G----TGCGCGGTTCGAAAACGGCCGA----ACT-------------------------- 583 * * * * ** * consensus_6384#0 CACCGATCGATCCCGCTACCGAAGCGAACGAAGAGCCGCAAAAGGCCAGAAAACCGTTGC 767 consensus_6384#1 CACCGGGGCATCCTGGNCCCAGACACNGGGAAAAATCCCNGGCTCCGGGNGAAACTTCGC 716 consensus_6384#2 ------------------------------------------------------------ consensus_6384#0 CGGGCGTGGCGAAGTTGGTGCTGAGCGAACAGCAGGCACAGCAACAGCAGTTGCAGCCGC 827 consensus_6384#1 GGACAACGGTCCGCNGGACATNNAACNA--AATAATCATTG-AACACTGAGTCCTCGCAC 773 consensus_6384#2 ------------------------------------------------------------ consensus_6384#0 ACCATCCTAGCAACGTACAGCGCACGCAAACGCCACCCAGC 868 consensus_6384#1 GCCA-CCTTGTGTAATNGGATGCATGTAGTAGGN------- 806 consensus_6384#2 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||