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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 868 fasta sequence
[GAATCCCCCCGAGGTTANATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATCCTACCAACGTTGACATCGCGCTCGTAATACGCCACGCGCTGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCTCGCCGAAACGCCAAGCTCACCACCAGCATCCGCAGTCTGGTGCGATTGGTGCGCGTTCGAAAACGGCCGAACTGCCGCAACTGAAGTATTCCACACTGCCAGCCGTTCATCAGCGCCGCGGACAGGTCGTGGTGGATGATCATCCGCTTCGAGCAGCTGCTGCCGCAACGGGGATC-GACGATCGACAGCGAACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACGGCAGTCGAGCTGCGCCAGGTGGCCCATCAAGCCACTAAGAAAGCGATCACGGACTCCTCCCAAATGGAAGTTCGTGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCCCGAGCTGTTGCG-GATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGG-CAACGAATCCCGCGGGCGAGCTGCAGCAATCGCTCGAAGGGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACGATACCGTGTTTCGCGTACCGGCACCGATCGATCCCGCTACCGAAGCGAACGAAGAGCCGCAAAAGGCCAGAAAACCGTTGCCGGGCGTGGCGAAGTTGGTGCTGAGCGAACAGCAGGCACAGCAACAGCAGTTGCAGCCGCACCATCCTAGCAACGTACAGCGCACGCAAACGCCACCCAGC]
[+] EMBL AL932609 [GAATCCCCCCGAGGTTANATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATCCTACCAACGTTGACATCGCGCTCGTAATACGCCACGCGCTGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCTCGCCGAAACGCCAAGCTCACCACCAGCATCCGCAGTCTGGTGCGATTGGTGCGCGTTCGAAAACGGCCGAACTGCCGCAACTGAAGTATTCCACACTGCCAGCCGTTCATCAGCGCCGCGGACAGGTCGTGGTGGATGATCATCCGCTTCGAGCAGCTGCTGCCGCAACGGGGATC GACGATCGACAGCGAACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACTGCAGTCGAGCTGCGCCAGGTGGCCCATCAAGCCACTAAGAAAGCGATCACGGACTCCTCCCAAATGGAAGTTCGTGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCCCGAGCTGTTGCG GATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGTAACATCCGG C AC AATCCCG ]
[+] EMBL BM587557 [ ccgAGCATCCGCAGTCTGGTGCGATTGGTGCGCGTTCGAAAACGGCCGAACTGCCGCAACTGAAGTATTCCACACTGCCAGCCGTTCATCAGCGCCGCGGACAGGTCGTGGTGGATGATCATCCGCTTCGAGCAGCTGCTGCCGCAACGGGGATC GACGATCGACAGCGAACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACGGCAGTCGAGCTGCGCCAGGTGGCCCATCAAGCCACTAAGAAAGCGATCACGGACTCCTCCCAAATGGAAGTTCGTGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCCCGAGCTGTTGCG GATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGGCCAACGAATCCCGCGGGCGAGCTGCAGCAATCGCTCGAAGGGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACGATACCGTGTTTCGCGTACCGGCACCGATCGATCCCGCTACCGAAGCGAACGAAGAGCCGCAAAAGGCCAGAAAACCGTTGCCGGGCGTGGCGAAGTTGGTGCTGAGCGAACAGCAGGCACAGCAACAGCAGTTGCAGCCGCACCATCCTAGCAACGTACAGCGCACGCAAACGCCACCCAGC]
[+] EMBL AL694706 [ cgagttaaCGAACTG CG ACTGAAGTAT CACACTGCCAGCCGTTCATCAGCGCCGCGGACAGGTCGTGGTGGATGATCATCCGCTTCGAGCAGCTGCTGCCGCAACGGGGATCTGACGATCGACAGCGAACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACGGCAGTCGAGCTGCGCCAGGTGG CCATCAAGCCACTAA AAAGCGATCACGGACTCCTCCCAAATGGAAGTTCGTGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCCCGAGCTGTTGCGNGATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGG CAACGAATCCCGCGGGCGAGCTGCAGCAATCGCTCGAAGGGATAca ]
consensusID : consensus_6384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[CAGAATCGCCCGAGGTGACGGTTACGACGGCTANCGTGAGGATGATCCCGAGCTGTTGCGGATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGGCCAACGAATCCCGCGGGCGAGCTGCAGCAATCTGCTCGAAGGGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACTGATACCGTGTTTCTGCGTACCTGGCACCTGATCGATCCCGCTACCGAAGCGAACGAAGAGCCTGCAAAAGGCCAGAAAACCGTTGCCGGGCTGTGTGCTGAAGTTGGTTGCTGAGCGAACAGCAGNGCACATGCAACAGCAGTTGCAGCCTGCACCATACCTAGCAACTGTACAGGCACGCAAACGCCACCCAGACAGCCTGAACCTCATGCGCTCGTACAACTATGATCTGGATTGTAGACGAAACAGTGCTTCACAGGCCGAACATCACGCAGTACGAAATCCCGGAGGATCGGTACAGGCANANAATAGNCGACAAAAAGCTCGCCAACCGGACAGGCAGGTACGAGANTGAACGCTGTTCAACNNAAACGGAATATATNCGANCCGCACCCGGACGAATNCCGAAACGCGGTGNGCACTTGCATCACCGGGGCATCCTGGNCCCAGACACNGGGAAAAATCCCNGGCTCCGGGNGAAACTTCGCGGACAACGGTCCGCNGGACATNNAACNAAATAATCATTGAACACTGAGTCCTCGCACGCCACCTTGTGTAATNGGATGCATGTAGTAGGN]
[+] EMBL AL931279 [CAGAATCGCCCGAGGTGACGGTTACGACGGCTANCGTGAGGATGATCCCGAGCTGTTGCGGATTGAGCTGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCGGCCAACGAATCCCGCGGGCGAGCTGCAGCAATCTGCTCGAAGGGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACTGATACCGTGTTTCTGCGTACCTGGCACCTGATCGATCCCGCTACCGAAGCGAACGAAGAGCCTGCAAAAGGCCAGAAAACCGTTGCCGGGCTGTGTGCTGAAGTTGGTTGCTGAGCGAACAGCAGNGCACATGCAACAGCAGTTGCAGCCTGCACCATACCTAGCAACTGTACAGGCACGCAAACGCCACCCAGACAGCCTGAACCTCATGCGCTCGTACAACTATGATCTGGATTGTAGACGAAACAGTGCTTCACAGGCCGAACATCACGCAGTACGAAATCCCGGAGGATCGGTACAGGCANANAATAGNCGACAAAAAGCTCGCCAACCGGACAGGCAGGTACGAGANTGAACGCTGTTCAACNNAAACGGAATATATNCGANCCGCACCCGGACGAATNCCGAAACGCGGTGNGCACTTGCATCACCGGGGCATCCTGGNCCCAGACACNGGGAAAAATCCCNGGCTCCGGGNGAAACTTCGCGGACAACGGTCCGCNGGACATNNAACNAAATAATCATTGAACACTGAGTCCTCGCACGCCACCTTGTGTAATNGGATGCATGTAGTAGGN]
consensusID : consensus_6384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[CCGGCATCACGGATGTCGTACCGACGGCGACCGGTTACTTCCCTGCGCAAACCCCGGGCAGCCCGATGAATTCCAGTCCGGCCGGTACTAAACGGAAGCCGGAAGTTGAGGTAGTGGAGCAGCTGAACTACATCAAGGACAAAATTCTCATCAAAGAAGATCTCCATCTGCACAACCATCTGCTCAAGCTCGACATTCCGTTGGCCATTTTTGGCATCCGATGGTTGCGTCTACTGTTTGGCCGGGAGTTTGCGCTACAAGACTTGCTGCTGCTGTGGGACGCAATATTCGGCGAAGGGGACGATCTCGGTCTGATTAACTACGTCGTCGTGGCGATGCTGATACGCATAAGAGATAAGTTAATTTATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATCCTACCAACGTTGACATCGCGCTCGTAATACGCCACGCGCTGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCCTCGCCGAAACGCCAAGCTCACCACCAGCAATCCGCAGTCTGGTGCGATTGGTGCGCGGTTCGAAAACGGCCGAACT]
[+] EMBL BM619900 [CCGGCATCACGGATGTCGTACCGACGGCGACCGGTTACTTCCCTGCGCAAACCCCGGGCAGCCCGATGAATTCCAGTCCGGCCGGTACTAAACGGAAGCCGGAAGTTGAGGTAGTGGAGCAGCTGAACTACATCAAGGACAAAATTCTCATCAAAGAAGATCTCCATCTGCACAACCATCTGCTCAAGCTCGACATTCCGTTGGCCATTTTTGGCATCCGATGGTTGCGTCTACTGTTTGGCCGGGAGTTTGCGCTACAAGACTTGCTGCTGCTGTGGGACGCAATATTCGGCGAAGGGGACGATCTCGGTCTGATTAACTACGTCGTCGTGGCGATGCTGATACGCATAAGAGATAAGTTAATTTATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATCCTACCAACGTTGACATCGCGCTCGTAATACGCCACGCGCTGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCCTCGCCGAAACGCCAAGCTCACCACCAGCAATCCGCAGTCTGGTGCGATTGGTGCGCGGTTCGAAAACGGCCGAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6384#0 GAATCCCCCCGAGGTTANATAGCGACTATACAACCTGCCTTTCGTACCTGATGCGGTATC 60
consensus_6384#1 ----------------------------CAGAATC-GCCCGAGGTGACGGTTACGACGGC 31
consensus_6384#2 -----------------------------------------------CCGGCATCACGGA 13
* *
consensus_6384#0 CTAC-CAACGTTGACATCGCGCT------CGTAATACGCCACGCGCTGCACATGAAATCG 113
consensus_6384#1 TANCGTGAGGATGATCCCGAGCTGTTG--CGGATTGAGCTGCAGAATGCGTACAACATTA 89
consensus_6384#2 TGTCGTACCGACGGCGACCGGTTACTTCCCTGCGCAAACCCCGGGCAGCCCGATGAATT- 72
* * * * * * * * * ** **
consensus_6384#0 CCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCCTCGCCGAAACGCCAA 173
consensus_6384#1 TGTCGGTCGGGCGGGCAA--AGTTGCTACAGTATTTGGCCGTGCTGCGGCGCAACATCCG 147
consensus_6384#2 --CCAGTCCGGCCGGTACTAAACGGAAGCCGGAAGT-----TGAGGTAGTGGAGCAGCTG 125
* * * * * * * * * * *
consensus_6384#0 GCTCACCACCAGCATCCGCAGTCTGGTGCGATTGGTGCGCGTTCGAAAACGGCCGAACTG 233
consensus_6384#1 GCCAACGAATCCCGCGGGCGAGCTGCAGCAATC--TGCTCGAAGGGATAGAGGAAATCTG 205
consensus_6384#2 AACTAC--ATCAAGGACAAAATTCTCATCAAA--------GAAGATCTCCATCTGCACAA 175
** * * * *
consensus_6384#0 C-CGCAACTGAAGTATTCCACACTGCCAG--CCGTTCATCAGCGCCGCGGACAGGTCGTG 290
consensus_6384#1 CTCACTGCTGAAA----CCACGCTACTGATACCGTGTTTCTGCGTACCTGGCA---CCTG 258
consensus_6384#2 CCATCTGCTCAAGCTCGACATTCCGTTGG--CCATTTTT----------GGCA---TCCG 220
* * ** ** ** * ** * * * ** *
consensus_6384#0 GTGGATGATCAT-CCGCTTCGAGCAGCTGCTGCCGCAACGGGGATCGACGATCGACAGCG 349
consensus_6384#1 ATCGATCCCGCTACCGAAGCGAAC-GAAGAGCCTGCAA-AAGGCCAGAAAACCGTTGCCG 316
consensus_6384#2 ATGGTTGCGTCTACTG-TTTGGCCGGGAGTTTGCGCTACAAGACTTG----CTGCTGCTG 275
* * * * * * * * * * ** * * * * *
consensus_6384#0 AACCAGCTCACTGCCGAGAAACAGTGGCTCGATGCGAAAGGCCACGGCAGTCGAGCTGCG 409
consensus_6384#1 GGCT-GTGTGCTGAAGTTGGTTGCTGAGCGAACAGCAGNGCACATGCAACAGCAGTTGCA 375
consensus_6384#2 TG---GGACGCAATATTCGGCGAAGGGGACGATCTCGGTCTGATTAACTACGTCGTCGTG 332
* * * * * *
consensus_6384#0 CCAGGTGGCCCATCAAGCCACTAAGAAAGCGATCACGGACTCCTCCCAAATGGAAGTTCG 469
consensus_6384#1 GCCTGCACCATACCTAGCAACTGTACAGGCA--CGCAAACGCCACCCAGACAG----CCT 429
consensus_6384#2 GCGATGCTGATACGCATAAGAGATAAGTTAATTTATAGCGACTATACAACCTGCC-TTTC 391
* * * * ** *
consensus_6384#0 TGACCCGACGGTTACCGACGGCTACCGTGAGGATGATCC-CGAGCTGTTGCGGATTGAGC 528
consensus_6384#1 GAACCTCATGCGCTCGTACAACTATGATCTGGATTGTAGACGAAACAGTGCTTCACAGGC 489
consensus_6384#2 GTACCTGATGCGGT-ATCCTACCAACGTTGACATCGCGCTCG---TAATACGCCACGCGC 447
*** * * * * * * ** ** * * **
consensus_6384#0 TGCAGAATGCGTACAACATTATGTCGGTCGGGCGGGCAAAGTTGCTACAGTATTTGGCCG 588
consensus_6384#1 CGAACATCACGCAGTACGAAATCCCGGA-GGATCGGTACAGGCAN-ANAATAGNCGACAA 547
consensus_6384#2 TGCACATGAAATCGCCCAAGGTGTACGAGCGACCGGCCGGAGCAATGATTTTCCTTTCC- 506
* * * * * * * ** * *
consensus_6384#0 TGCTGCGGCGCAACATCCGG-CAACGAATCCCGCGGGCGAGCTGCAGCAATCGCTCGAAG 647
consensus_6384#1 AA----AGCTCGCCAACCGGACAGGCAGGTACGAGANTGAAC-GCTGTTCAACNNAAACG 602
consensus_6384#2 --------CTCGCCGAAACGCCAAGCTCAC-CACCAGCAATCCGCAGTCTGGTGCGATTG 557
* * * * ** * * * ** * *
consensus_6384#0 GGATAGAGGAAATCTGCTCACTGCTGAAACCACGCTACGATACCGTGTTTCGCGTACCGG 707
consensus_6384#1 GAATATATNCGANCCGCACCCGGACGA----ATNCCGAAACGCGGTGNG-CACTTGC-AT 656
consensus_6384#2 G----TGCGCGGTTCGAAAACGGCCGA----ACT-------------------------- 583
* * * * ** *
consensus_6384#0 CACCGATCGATCCCGCTACCGAAGCGAACGAAGAGCCGCAAAAGGCCAGAAAACCGTTGC 767
consensus_6384#1 CACCGGGGCATCCTGGNCCCAGACACNGGGAAAAATCCCNGGCTCCGGGNGAAACTTCGC 716
consensus_6384#2 ------------------------------------------------------------
consensus_6384#0 CGGGCGTGGCGAAGTTGGTGCTGAGCGAACAGCAGGCACAGCAACAGCAGTTGCAGCCGC 827
consensus_6384#1 GGACAACGGTCCGCNGGACATNNAACNA--AATAATCATTG-AACACTGAGTCCTCGCAC 773
consensus_6384#2 ------------------------------------------------------------
consensus_6384#0 ACCATCCTAGCAACGTACAGCGCACGCAAACGCCACCCAGC 868
consensus_6384#1 GCCA-CCTTGTGTAATNGGATGCATGTAGTAGGN------- 806
consensus_6384#2 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||