These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1363 fasta sequence [TGTCGCTGTACACCGCCATGTCGGACATACTGTGGAACATTGGGGAGAAGGCGAAAGCGATCGTCGCGCTGCCGGGGGAAGCGTCCCACATCCCGCACAGCCACGTCTACTTTCAGGACAACGTGACGGAGAAGCTGTACTTCTTCGAGTTTACCAAGCTGGACGATCTGCAAATCTTTATGAAGCGCTATCTACCATACTTTACAGAAAACCCTGGCCCAGGAACGCTGCTCTATCTGTACAGTGCCGTGCTGACGCGTGGCATGGAGAACATGCGCAACGATTTGGACGCACCGAAGGGTGCGCATCTGATGGGACCGCACGAGGAAGGCTCGCTGAATGTGATCACGCTGCTGCTGACGGGGCGTGCTACACCGTACCTACACAACGGTGTCGTGTACGTCGGTGATGAGGATCTTTATGCCGTGCCGCAGTTCGGAGTCCTGAGCCGTGGTGCAATCGGGCTGCTTGTTTGGGAGGGCGAAAACGAAGCCATGCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGGCCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACAACGGCGACCAGGACGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGCTCAACTTCTAAACAGTGCGAGCGAGAGCGACAGGAGCAACTGGTTGATGATGGAATGTCCCCCTACGCGCACGTCTGTGCGT----GTGTGTGTATGAGTGTGGGCGTGTGTGTNTGTATGAAGATTCACCCTGAATTAGAGCGCGCAATAGTAACTGTATTGCAATATGTTTCCCTTGCCTAGCACCCG-CCTAGGCACATCCGGAAGCGATGTAGCGATGGTGTCGTGTGTTGATTATGAGCAATTAATNTATGCGTGTGTGTGTGTTTTGCTTTCGTTTTCAGTTCTACATTGTTTTACGCGCTACCTGGGAGGAGGTCAAGCTCCCTTCCTGGCTCCTGCAAAAGGCTCGGATCGGGATGCAAATTGCCCTGGAAGGAAACTGATCGCTTGGTTTTTTTTGTACTTGGGAAAACAGCCGGAAACAAATAACAGCTTGTAGTTACACTTACTAACAACTCCCCCGAACAAGCCCCACTGCCCGCACGGCGGGTTGGCTCATGCTTAATAATTCCGAATAAAACGG] [+] EMBL BX612448 [TGTCGCTGTACACCGCCATGTCGGACATACTGTGGAACATTGGGGAGAAGGCGAAAGCGATCGTCGCGCTGCCGGGGGAAGCGTCCCACATCCCGCACAGCCACGTCTACTTTCAGGACAACGTGACGGAGAAGCTGTACTTCTTCGAGTTTACCAAGCTGGACGATCTGCAAATCTTTATGAAGCGCTATCTACCATACTTTACAGAAAACCCTGGCCCAGGAACGCTGCTCTATCTGTACAGTGCCGTGCTGACGCGTGGCATGGAGAACATGCGCAACGATTTGGACGCACCGAAGGGTGCGCATCTGATGGGACCGCACGAGGAAGGCTCGCTGAATGTGATCACGCTGCTGCTGACGGGGCGTGCTACACCGTACCTACACAACGGTGTCGTGTACGTCGGTGATGAGGATCTTTATGCCGTGCCGCAGTTCGGAGTCCTGAGCCGTGGTGCAATCGGGCTGCTTGTTTGGGAGGGCGAAAACGAAGCCATGCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGGCCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAATTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCCATGACCGTCGATAACCGC ] [+] EMBL BX616575 [ ACACAACGGTGTCGTGTACGTCGGTGATGAGGATCATTATGCCGTGCCGCAGTTCGGAGTCCTGAGCCGTGGTGCAATCGGGCTGCTTGTTTGGGAGGGCGAAAACGAAGCCATGCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGGCCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACAACGGCGACCAGGATGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGCTCAACTTCTAAACAGTGCGAGCGAGAGCGACAGGAGCGAC ] [+] EMBL BX619746 [ GCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGGCCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACAACGGCGACCAGGACGGGGATCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGCTCAACTTCTAAGCGGCGCGAGCGAGAGCGACATGAGCATATGGTTGATGATGGAATGTCCCCCTACGCGCACGTCTGTGCGT GTGTGTGTATGAGTGTGGGCGTGTGTGTNTGTATGAAGATTCACCCTGAATTAGAGCGCGCAATAGTAACTGTATTGCAATATGTTTCCCTTGCCTAGCACCCG CCTAGGCACATCCGGAAGCGATGTAGCGATGGTGTCGTGTGTTGATTATGAGCAATTAATNTATGCGTGT ] [+] EMBL BX613468 [ TACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACAACGGCGACCAGGACGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGCTCAACTTCTAAACAGTGCGAGCGTGAGCGACAGGAGCAACTGGTTAATGATGGAAAGTCCCCCGACGGGCACGTCTGTGCGTGTGCGTGTGTGTATGAGTGTGGGCGTGTGTGTTTGTATGAAGATTCACCCCAAATTAGAGCGCGCAATAGTGACTGTATTGCAATATGTTTCCCTTGCCTAGCACCCGCCCTAGGCACATCCGGAAGCGATGGAGCTATGGCGTCGTGTGTTGATTATGAGCAATTAATTTAAGCGTGTGTGTGTGTTTTGCTTTCGTTTTCAGTTCTACATTGTTTTACGCGCTACCTGGGAGGAGGTCAAGCTCCCTTCCTGGCTCCTGCAAAAGGCTCGGATCGGGATGCAAATTGCCCTGGAAGGAAACTGATCGCTTGGTTTTTTTTGTACTTGGGAAAACAGCCGGAAACAAATAACAGCTTGTAGTTACACTTACTAACAACTCCCCCGAACAAGCCCCACTGCCCGCACGGCGGGTTGGCTCATGCTTAATAATTCCGAATAAAACGG] consensusID : consensus_6385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [CGAGTTATTCACGGCTCAAAACGCCGCCCACGCTTTTTGGTTAAGCTGCTGCTGCGGCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGGACAACGGCGACCAGGATGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCTCGCCTCAAACTTCTAAACAGTGCGAGCGAGAGCGAACAGGAGCAACCTGGTTGATGATGGAATGTCCCCCTACGGGCACGTCTGTGCGATGTGCCGTATGTAGTGTGTACTGAGTGTGGGCCGTGTGTGTACCGTACTGAACGATTCACCCTGAATTAAAGCGCGCAANTAGTAACTGTAT] [+] EMBL AL692413 [CGAGTTATTCACGGCTCAAAACGCCGCCCACGCTTTTTGGTTAAGCTGCTGCTGCGGCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGGACAACGGCGACCAGGATGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCTCGCCTCAAACTTCTAAACAGTGCGAGCGAGAGCGAACAGGAGCAACCTGGTTGATGATGGAATGTCCCCCTACGGGCACGTCTGTGCGATGTGCCGTATGTAGTGTGTACTGAGTGTGGGCCGTGTGTGTACCGTACTGAACGATTCACCCTGAATTAAAGCGCGCAANTAGTAACTGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6385#0 TGTCGCTGTACACCGCCATGTCGGACATACTGTGGAACATTGGGGAGAAGGCGAAAGCGA 60 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 TCGTCGCGCTGCCGGGGGAAGCGTCCCACATCCCGCACAGCCACGTCTACTTTCAGGACA 120 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 ACGTGACGGAGAAGCTGTACTTCTTCGAGTTTACCAAGCTGGACGATCTGCAAATCTTTA 180 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 TGAAGCGCTATCTACCATACTTTACAGAAAACCCTGGCCCAGGAACGCTGCTCTATCTGT 240 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 ACAGTGCCGTGCTGACGCGTGGCATGGAGAACATGCGCAACGATTTGGACGCACCGAAGG 300 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 GTGCGCATCTGATGGGACCGCACGAGGAAGGCTCGCTGAATGTGATCACGCTGCTGCTGA 360 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 CGGGGCGTGCTACACCGTACCTACACAACGGTGTCGTGTACGTCGGTGATGAGGATCTTT 420 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 ATGCCGTGCCGCAGTTCGGAGTCCTGAGCCGTGGTGCAATCGGGCTGCTTGTTTGGGAGG 480 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 GCGAAAACGAAGCCATGCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGG 540 consensus_6385#1 ---------------------------------CGAGTTATTCACGGCTCAAAACGCCGC 27 * ******************* consensus_6385#0 CCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACC 600 consensus_6385#1 CCACGCTT-TTTGGTTAAGCTGCTGCTGCGGC-ATTACGGCGTACTGTTCAACTCAAACC 85 ****** ***** ***************** *************************** consensus_6385#0 GCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCG 660 consensus_6385#1 GCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCG 145 ************************************************************ consensus_6385#0 CCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACA 720 consensus_6385#1 CCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGG-GACA 204 ******************************************************* **** consensus_6385#0 ACGGCGACCAGGACGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGAC 780 consensus_6385#1 ACGGCGACCAGGATGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGAC 264 ************* ********************************************** consensus_6385#0 TCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGC 840 consensus_6385#1 TCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCTCGCC 324 ******************************************************* * consensus_6385#0 TCAA-CTTCTAAACAGTGCGAGCGAGAGCGA-CAGGAGCAAC-TGGTTGATGATGGAATG 897 consensus_6385#1 TCAAACTTCTAAACAGTGCGAGCGAGAGCGAACAGGAGCAACCTGGTTGATGATGGAATG 384 **** ************************** ********** ***************** consensus_6385#0 TCCCCCTACGCGCACGTCTGTGCG-TGTG----------TGTGTA-TGAGTGTGGGC-GT 944 consensus_6385#1 TCCCCCTACGGGCACGTCTGTGCGATGTGCCGTATGTAGTGTGTACTGAGTGTGGGCCGT 444 ********** ************* **** ****** *********** ** consensus_6385#0 GTGTGTNT-GTA-TGAA-GATTCACCCTGAATTAGAGCGCGCAAT-AGTAACTGTATTGC 1000 consensus_6385#1 GTGTGTACCGTACTGAACGATTCACCCTGAATTAAAGCGCGCAANTAGTAACTGTAT--- 501 ****** *** **** **************** ********* *********** consensus_6385#0 AATATGTTTCCCTTGCCTAGCACCCGCCTAGGCACATCCGGAAGCGATGTAGCGATGGTG 1060 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 TCGTGTGTTGATTATGAGCAATTAATNTATGCGTGTGTGTGTGTTTTGCTTTCGTTTTCA 1120 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 GTTCTACATTGTTTTACGCGCTACCTGGGAGGAGGTCAAGCTCCCTTCCTGGCTCCTGCA 1180 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 AAAGGCTCGGATCGGGATGCAAATTGCCCTGGAAGGAAACTGATCGCTTGGTTTTTTTTG 1240 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 TACTTGGGAAAACAGCCGGAAACAAATAACAGCTTGTAGTTACACTTACTAACAACTCCC 1300 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 CCGAACAAGCCCCACTGCCCGCACGGCGGGTTGGCTCATGCTTAATAATTCCGAATAAAA 1360 consensus_6385#1 ------------------------------------------------------------ consensus_6385#0 CGG 1363 consensus_6385#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||