These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1013 fasta sequence [GATCGCCCCGAGGCTNAAGGGGTAAAAGGAAGAAAAAAACGACTAATTTGGAAACGTAGTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTAAGTTTCCATGCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGAATCACAGAATGTGTAGGGTGGGGCAAACAAAAGAGGGTCAGGGAAACGAGATATATACCGTGTTTGGTTCAGGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTGGTAGTACCGGTAGTAGTGAGTTATAATCGAATTTTAATCTGGAGAAAAGAAAAATTCGTACCTAAGCATGGTGTGAGGAGGGGA-G-GGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCCATAGCATTTTCCCTCGTAACAATTAATTTCATGTGCATCGCTCTGTAGAATTGATTGATTGGATGGTACCGATTAGTTGTGTCGCACATGTGTGGTGAAGAGGGTCGAAGCATAGAACGAACCAAGTCGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCTTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTGTTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCATGGTACGGCGCGTGCACGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAAT-GCGTGATAGTATGGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAAAACGAAGCATCCTTCCGTTCTGTTCGAGGAAAAAAAAAAGAAGTCATTTTGGTGAATTAGCGCAGTATAAATAGATGCCACAGCCAAGGCGAGTTGAGGGGGTTTGAAACAATCGCGGTGGAAACGATAGTAGTACACCGTGGTGTATGTACTCCCTCT] [+] EMBL AL934947 [GATCGCCCCGAGGCTNAAGGGGTAAAAGGAAGAAAAAAACGACTAATTTGGAAACGTAGTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTAAGTTTCCATGCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGAATCACAGAATGTGTAGGGTGGGGCAAACAAAAGAGGGTCAGGGAAACGAGATATATACCGTGTTTGGTTCAGGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTGGTAGTACCGGTAGTAGTGAGTTATAATCGAATTTTAATCTGAAGAAAAGAAAAATTCGTACCTAAGCATGGTGTGAGGAGGGGAGG GGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCCATAGCATTTTCCCTCGTAACAATTAATTTCATTTGCATCGCTCTGTAGGATTGATTGATTGGATGGTACCGATTAGTTTTGTCGCACATGTGTGGTCAAGAGGGTCGAAGCATAGAACGAACCAAGTTGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCT ] [+] EMBL BM651433 [ ccGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTGGTAGTACCGGCAGTAGTGAGTTATAATCGAATTTTAATCTGGAGAAAAGAAAAATTCGTACCTAAGCATGGTGTGAGGA GGGA GGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCTATAGCATTTTCCCTCGTAACAATTAATTTCATGTGCATCGCTCCGTAGAATTGATTGATTGGATGGTACCGATTAGTTGTGTCGCACATGTGTGGTGAAGAGGGTCGAAGCATAGAACGAACCAAGTCGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCTTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTGTTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCATGGTACGGCGCGTGCACGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAAT GCGTGATAGTATGGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAA ] [+] EMBL BX620471 [ TCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTGGTAGTACCGGTAGTAGTGAGTTATAATCGAATTTTAATCTGGAGAAAAGAAAAATTCGTACCTAAGCATGGTGTGAGGAGGGGA GCGGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCCATAGCATTTTCCCTCGTAACAATTAATTTCATGTGCATCGCTCTGTAGAATTGATTGATTGGATGGTACCGATTAGTTGTGTCGCACATGTGTGGTGAAGAGGGTCGAAGCATAGAACGAACCAAGTCGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCTTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTGTTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCGTGGTACGGCGCGTGCACGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAATAGCGTGATAGTATGGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAAAACGAAGCATCCTTCCGTTCTG ] [+] EMBL BM629856 [ cc G GGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCCATAGCATTTTCCCTCGTAACAATTAATTTCATGTGCATCGCTCCGTAGAATTGATTGATTGGATGGTACCGATTAGTTGTGTCGCACATGTGTGGTGAAGAGGGTCGAAGCATAGAACGAACCAAGTCGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCTTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTGTTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCATGGTACGGCGCGTGCACGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAAT GCGTGATAGTATGGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAAAACGAAGCATCCTTCCGTTCTGTTCGAGGAAAAAAAAAAGAAGTCATTTTGGTGAATTAGCGCAGTATAAATAGATGCCACAGCCAAGGCGAGTTGAGGGGGTTTGAAACAATCGCGGTGGAAACGATAGTAGTACACCGTGGTGTATGTACTCCCTCT] consensusID : consensus_6387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 839 fasta sequence [GCAGAATCCCCACGNGTTAAGGGGTAAAAGGAAGAAANNAACGACTAATTTGGAAACGTAGTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTNNAGTTTCCATGCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGANTCACAGAATGTGTAGGGTGGGGCAAACAAAAGAGGGTCAGGAAACGAGATATATACCGTGTTATGGTTCAGGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTTGGTAGTACCGGTAGTAGTGAGTTATAATCGANNTTTTAACTCTGCACAGCANAAGAAAAATTCGTACCTAAGCATGGTGTGCAGGCAGGGGAGGGGGCAGCACTGTTTCGGAAATGTTTACTCACTCCTACTTCTATCTATCANATCGTCAAAACCAATCATTCACAGCCATAGNATTAAACCCTCGNTAACACATNNATATTCATTTAGCCTCGCTCTGTAGNGATTGATTCGATTGGATGGTACCGATTAGTTNTTGTCGCACATGTGTGGTCAAGAGGGTCGANAGCATAGAACGAACCAAGTTGCAGNGTAATATATGAGCCGATNGATAGTACTACAACAGATGTACGGATGCGCGATGAGGGAGGTACCTTTANTCCCCACGTCCATTAAACCTANATANNAGACACNATAGCAACCCAGTTCGGCANCTAAAAAGTCGCGTCACAGTTANCCCTCTTCATTTGNTTTAACGCAATTTATATCNACAGCAACGAGACGTGGTACGGCGCGTGACAGTGNCATAATGCAAAGTGTANCACACACA] [+] EMBL AL694718 [GCAGAATCCCCACGNGTTAAGGGGTAAAAGGAAGAAANNAACGACTAATTTGGAAACGTAGTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTNNAGTTTCCATGCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGANTCACAGAATGTGTAGGGTGGGGCAAACAAAAGAGGGTCAGGAAACGAGATATATACCGTGTTATGGTTCAGGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTTGGTAGTACCGGTAGTAGTGAGTTATAATCGANNTTTTAACTCTGCACAGCANAAGAAAAATTCGTACCTAAGCATGGTGTGCAGGCAGGGGAGGGGGCAGCACTGTTTCGGAAATGTTTACTCACTCCTACTTCTATCTATCANATCGTCAAAACCAATCATTCACAGCCATAGNATTAAACCCTCGNTAACACATNNATATTCATTTAGCCTCGCTCTGTAGNGATTGATTCGATTGGATGGTACCGATTAGTTNTTGTCGCACATGTGTGGTCAAGAGGGTCGANAGCATAGAACGAACCAAGTTGCAGNGTAATATATGAGCCGATNGATAGTACTACAACAGATGTACGGATGCGCGATGAGGGAGGTACCTTTANTCCCCACGTCCATTAAACCTANATANNAGACACNATAGCAACCCAGTTCGGCANCTAAAAAGTCGCGTCACAGTTANCCCTCTTCATTTGNTTTAACGCAATTTATATCNACAGCAACGAGACGTGGTACGGCGCGTGACAGTGNCATAATGCAAAGTGTANCACACACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6387#0 --GATCGCCCCGAGGCTNAAGGGGTAAAAGGAAGAAAAAAACGACTAATTTGGAAACGTA 58 consensus_6387#1 GCAGAATCCCCACGNGTTAAGGGGTAAAAGGAAGAAANNAACGACTAATTTGGAAACGTA 60 **** * * ******************* ********************* consensus_6387#0 GTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTAA-GTTTCCAT 117 consensus_6387#1 GTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTNNAGTTTCCAT 120 ************************************************* ******** consensus_6387#0 GCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGAATCACAGAATGTGTA 177 consensus_6387#1 GCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGANTCACAGAATGTGTA 180 ********************************************* ************** consensus_6387#0 GGGTGGGGCAAACAAAAGAGGGTCAGGGAAACGAGATATATACCGTGTT-TGGTTCAGGG 236 consensus_6387#1 GGGTGGGGCAAACAAAAGAGGGTCAGG-AAACGAGATATATACCGTGTTATGGTTCAGGG 239 *************************** ********************* ********** consensus_6387#0 CCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTT-GGTAGTACCG 295 consensus_6387#1 CCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTTGGTAGTACCG 299 ************************************************* ********** consensus_6387#0 GTAGTAGTGAGTTATAATCGAATTTTAA--TCTGGAGA---AAAGAAAAATTCGTACCTA 350 consensus_6387#1 GTAGTAGTGAGTTATAATCGANNTTTTAACTCTGCACAGCANAAGAAAAATTCGTACCTA 359 ********************* *** * **** * * ****************** consensus_6387#0 AGCATGGTGTG-----AGGAGGGGAGGGGAGACTGTTTTTGAAATGTTTTACTCACTCCT 405 consensus_6387#1 AGCATGGTGTGCAGGCAGGGGAGGGGGCAGCACTGTTTCGGAAATGTTT-ACTCACTCCT 418 *********** *** * ** ** ******* ********* ********** consensus_6387#0 ACTTCTATCTAT--AATCGTAAAA--CAATCATTCAC-GCCATAGCATTT--TCCCTCGT 458 consensus_6387#1 ACTTCTATCTATCANATCGTCAAAACCAATCATTCACAGCCATAGNATTAAACCCTCGNT 478 ************ ***** *** *********** ******* *** ** * consensus_6387#0 AACA-ATTAAT-TTCATGT-GCATCGCTCTGTAGA-ATTGATT-GATTGGATGGTACCGA 513 consensus_6387#1 AACACATNNATATTCATTTAGCCTCGCTCTGTAGNGATTGATTCGATTGGATGGTACCGA 538 **** ** ** ***** * ** *********** ******* **************** consensus_6387#0 TTAGTTGT-GTCGCACATGTGTGGTGAAGAGGGTCGAA-GCATAGAACGAACCAAGTCGC 571 consensus_6387#1 TTAGTTNTTGTCGCACATGTGTGGTCAAGAGGGTCGANAGCATAGAACGAACCAAGTTGC 598 ****** * **************** *********** ****************** ** consensus_6387#0 AGG-TAATATTTGAGCGA--TGATAGTACTACA-CAGATGTACGGTGCGCGTGAGGAGTC 627 consensus_6387#1 AGNGTAATATATGAGCCGATNGATAGTACTACAACAGATGTACGG-ATGCGCGATGAGGG 657 ** ****** ***** ************ *********** *** ** *** consensus_6387#0 TTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTG 687 consensus_6387#1 AGGTACCTTTANTCCCCACGTCCATTAAACCTANATANNAGACACNATAGC--AACCCAG 715 * * * * ** * ** * * * *** * ** * * consensus_6387#0 TTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCATGGTACGGCGCG-TGCA 746 consensus_6387#1 TTCGGCANCTAAAAAGTCGCGTCACAGTTANCCCTCTTCATT-TGNTTTAACGCAATTTA 774 ** * * * * ** * * * ** * *** * * consensus_6387#0 CGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAATGCGTGATAGTAT 806 consensus_6387#1 TAT-CNACAGCAACGAG-ACGTGGTACGGCGCGTGACAGTGNCATAATGC---AAAGTGT 829 * * ** *** * * ** * ** ** *** ***** * *** * consensus_6387#0 GGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAAAACGAAGCATCC 866 consensus_6387#1 ANCACACACA-------------------------------------------------- 839 * * consensus_6387#0 TTCCGTTCTGTTCGAGGAAAAAAAAAAGAAGTCATTTTGGTGAATTAGCGCAGTATAAAT 926 consensus_6387#1 ------------------------------------------------------------ consensus_6387#0 AGATGCCACAGCCAAGGCGAGTTGAGGGGGTTTGAAACAATCGCGGTGGAAACGATAGTA 986 consensus_6387#1 ------------------------------------------------------------ consensus_6387#0 GTACACCGTGGTGTATGTACTCCCTCT 1013 consensus_6387#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||