These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1221 fasta sequence [ATTCTATGGAACGTGTGTGATGTCGGACTAACCGCATCCACGCGTAATGAGAATGCGTTATGGATGAATGTGTTGTTGAAATCGACGAGTGTCGTTTCATGTGGCATTTTGTGACCTAATACTGCGGACACCTTCTCCGACTGCAGTTTCCGCCGGGACTGTTCAACAAACTACAGCGATCGCCATCATCTCAAATCCAGAATACGTACCGTCGGTCGATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCACTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGTCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCACTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCTGCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCACTAATATGCCGCGCAGCACA-GCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTTGAGTGCACTGATTCATTGAAACTGTCATCGTCGATCAAACCCATTACCAGCAGGCAAGGGGACACACCGGGTCACAAGCACTTGTATCGAACTCGTTCCGTGCCGCAATCTTTGCCTTCGACAGAAAATAAAAGAAACACGCGCGCGCTCGCGTTCGATCTATCGCGGTTCAACCTTCGTTCGACTCCGTTCGAATTGCACTGAAAAAGGGCGACCCCCAGAGCACTGACGGAACGCGCGCAACACCACCTCGTACCGGGAGCCGG] [+] EMBL CNS09APO [ATTCTATGGAACGTGTGTGATGTCGGACTAACCGCATCCACGCGTAATGAGAATGCGTTATGGATGAATGTGTTGTTGAAATCGACGAGTGTCGTTTCATGTGGCATTTTGTGACCTAATACTGCGGACACCTTCTCCGACTGCAGTTTCCGCCGGGACTGTTCAACAAACTACAGCGATCGCCATCATCTCAAATCCAGAATACGTACCGTCGGTCGATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCACTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGTCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCACTTTCCCGCCTCCGCA GTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCTGCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCACTAATATGCCGCGCA CACAGGCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTTGAGTTCACTTATTCATTGAAA ] [-] EMBL CNS09APN [ GATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCACTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGTCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCT TGACCGTCGGTCACTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCTGCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCACTAATATGCCGCGCAGCACA GCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTTGAGTGCACTGATTCA ] [-] EMBL BM633642 [ CCTAGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCACTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCTGCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCACTAATATGCCGCGCAGCACA GCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTTGAGTGCACTGATTCATTGAAACTGTCATCGTCGATCAAACCCATTACCAGCAGGCAAGGGGACACACCGGGTCACAAGCACTTGTATCGAACTCGTTCCGTGCCGCAATCTTTGCCTTCGACAGAAAATAAAAGAAACACGCGCGCGCTCGCGTTCGATCTATCGCGGTTCAACCTTCGTTCGACTCCGTTCGAATTGCACTGAAAAAGGGCGACCCCCAGAGCACTGACGGAACGCGCGCAACACCACCTCGTACCGGGAGCCGG] consensusID : consensus_6389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CGCGCTGATGTGCTCGCCGTTGCGTCGTCGTGGTTGCGCCAGCTGATCCAAGCGTGTCATCGAGAACGCTCGGCCTGGTGTTCTGGGAGTGTGTGTACCGAGAGACGATCTAGAGCTATCACGAGGACTAGGAATGGTAGGCATTAGATCGGTCTTTCGACGATTGACAGTGCGCTGATAGTTCATTTCTGCTGTATCGTCGTCGGTCGATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCGCTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCACGCTCCTGGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGCCCACGCGTCCGCGG] [-] EMBL BM581267 [CGCGCTGATGTGCTCGCCGTTGCGTCGTCGTGGTTGCGCCAGCTGATCCAAGCGTGTCATCGAGAACGCTCGGCCTGGTGTTCTGGGAGTGTGTGTACCGAGAGACGATCTAGAGCTATCACGAGGACTAGGAATGGTAGGCATTAGATCGGTCTTTCGACGATTGACAGTGCGCTGATAGTTCATTTCTGCTGTATCGTCGTCGGTCGATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCGCTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCACGCTCCTGGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGCCCACGCGTCCGCGG] consensusID : consensus_6389#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [TCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTTCTGTGTTTCTACCATTATCGACGCTATCATCGCCGACGCAAGCAAACCAGTGAAGAGTGTGCGCAACGGACTGTTCGTGCAGTCGATCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTTCTATTGTACCTGGTGACTGCGTTTTGTTGTCAAGAATTTGGTTAATTTCTTCCGTAGAATCCGCCATGTTGATGCAGGAGAGGGGAGGAGAGCCGTGGGGATGTAGCTGAATCGTTTGTCTTGTTTCGGTCTCGACTCGACCGG] [-] EMBL BM624179 [TCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTTCTGTGTTTCTACCATTATCGACGCTATCATCGCCGACGCAAGCAAACCAGTGAAGAGTGTGCGCAACGGACTGTTCGTGCAGTCGATCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTTCTATTGTACCTGGTGACTGCGTTTTGTTGTCAAGAATTTGGTTAATTTCTTCCGTAGAATCCGCCATGTTGATGCAGGAGAGGGGAGGAGAGCCGTGGGGATGTAGCTGAATCGTTTGTCTTGTTTCGGTCTCGACTCGACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6389#0 -ATTCTATGGAACGTGT-GTGATGTCGGACTAACCGCATCCACGCGTAATGAGAATGCGT 58 consensus_6389#1 CGCGCTGATGTGCTCGCCGTTGCGTCGTCGTGGTTGCGCCAGC---TGATCCAAGCGTGT 57 consensus_6389#2 ------------------------------------------------------------ consensus_6389#0 TATGGATGA-ATGTGTTGTTGAAATCGACGAGTGT-CGTTTCATGTGGCATTTTGTGACC 116 consensus_6389#1 CATCGAGAACGCTCGGCCTGGTGTTCTGGGAGTGTGTGTACCGAGAGACGATCTA-GAGC 116 consensus_6389#2 ------------------------------------------------------------ consensus_6389#0 TAATACTGCGGACACCTTCTCCGACTGCAGTTTCCGCCGGGACTGTTCAACAAACTACAG 176 consensus_6389#1 TATCAC-GAGGAC-----TAGGAATGGTAGGCATTAGATCGGTCTTTCGACGATTGACAG 170 consensus_6389#2 ------------------------------------------------------------ consensus_6389#0 CGATCGCCATCATCTCAAATCCAGAATACGTACCGTCGGTCGATCGGTCGAGACCACTGG 236 consensus_6389#1 TG--CGCTGATAGTTCATTTCTGCTGTAT-CGTCGTCGGTCGATCGGTCGAGACCACTGG 227 consensus_6389#2 ------------------------------------------------------------ consensus_6389#0 CAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCG 296 consensus_6389#1 CAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCG 287 consensus_6389#2 ------------------------------------------------------------ consensus_6389#0 TTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGA 356 consensus_6389#1 TTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGA 347 consensus_6389#2 ------------------------------------------------------------ consensus_6389#0 ACGAGCTGCACATGCCACTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAG 416 consensus_6389#1 ACGAGCTGCACATGCCGCTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAG 407 consensus_6389#2 ------------------------------------TCCGCGGTGTCGACGATCCGAAAG 24 ************************ consensus_6389#0 CGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCT 476 consensus_6389#1 CGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCACGCTCCT 467 consensus_6389#2 CGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCT 84 **************************************************** ******* consensus_6389#0 GGTTCTTGCGCAGTATGTACTCCCGTCGCTCGTTATCGGCCTCGATGATGGCCCGGCGAC 536 consensus_6389#1 GGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGAC 527 consensus_6389#2 GGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGAC 144 ************************* ********************************** consensus_6389#0 GCTCCTCGACCTGTGACCGTCGGTCACTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGC 596 consensus_6389#1 GCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGC 587 consensus_6389#2 GCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGC 204 ************************* ********************************** consensus_6389#0 GTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCT 656 consensus_6389#1 GTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCT 647 consensus_6389#2 GTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCT 264 ************************************************************ consensus_6389#0 CCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCT 716 consensus_6389#1 CCTCGAGCTTCTTCTGCCGCTCCTCGCCCACGCGTCCGCGG------------------- 688 consensus_6389#2 CCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCT 324 ************************** * *** * consensus_6389#0 CACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCG 776 consensus_6389#1 ------------------------------------------------------------ consensus_6389#2 CACGTTCCTTTTGCAGTTCTTCTGTGTTTCTAC-CATTATCGACGCTATCATCGCCGACG 383 consensus_6389#0 CATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCT 836 consensus_6389#1 ------------------------------------------------------------ consensus_6389#2 CAAGCAAACCAGTGAAGAGTGTGCGCAACGGACTGTTCGTGCAGTCGATCTCTATTGGCT 443 consensus_6389#0 GCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCA-CTAATATGCCGCGC 895 consensus_6389#1 ------------------------------------------------------------ consensus_6389#2 GAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTTCTATTGTACCT 503 consensus_6389#0 AGCACAGCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTT 955 consensus_6389#1 ------------------------------------------------------------ consensus_6389#2 GGTGACTGCGTTTTGTTGTCAAGAATTTGGTTAATTTCTTCCGTAGAATCCGCCATGTTG 563 consensus_6389#0 GAGTGCACTGATTCATTGAAACTGTCATCGTCGATCAAACCCATTACCAGCAGGCAAGGG 1015 consensus_6389#1 ------------------------------------------------------------ consensus_6389#2 ATGCAGGAGAGGGGAGGAGAGCCGTGGGGATGTAGCTGAATCGTTTGTCTTGTTTCGGTC 623 consensus_6389#0 GACACACCGGGTCACAAGCACTTGTATCGAACTCGTTCCGTGCCGCAATCTTTGCCTTCG 1075 consensus_6389#1 ------------------------------------------------------------ consensus_6389#2 TCGACTCGACCGG----------------------------------------------- 636 consensus_6389#0 ACAGAAAATAAAAGAAACACGCGCGCGCTCGCGTTCGATCTATCGCGGTTCAACCTTCGT 1135 consensus_6389#1 ------------------------------------------------------------ consensus_6389#2 ------------------------------------------------------------ consensus_6389#0 TCGACTCCGTTCGAATTGCACTGAAAAAGGGCGACCCCCAGAGCACTGACGGAACGCGCG 1195 consensus_6389#1 ------------------------------------------------------------ consensus_6389#2 ------------------------------------------------------------ consensus_6389#0 CAACACCACCTCGTACCGGGAGCCGG 1221 consensus_6389#1 -------------------------- consensus_6389#2 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||