These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1292 fasta sequence [CCGAAACTAATTGCGTGTTTTCTCGAGAGTTAAGAAAAGTACTTACAAAAAAGAAACTATACGCTTGTGTACAACACGCACCAACCAAAATTTCTCGCCTCTTTACTATTCTTCATCTTTCCTCTTTTCTAACTAGTAACTAACTAACTGCGAGCGTGGAGGAAGTAAAACACATTACTGATACACTAGCAACTTAATGCATCGTCCTTAATAATAATGCAAAATCAAACACATTCATACAAACACAGACAGGCAGACAGACAAACGAGAAGAAGAGAACTACAAACAAATCTAACAAAAGAACCATAAAGCACGCATTGGAGAAAACCAAAAAAACATTGAGAGAAAAGACAAACACTGTATTAGACAGGAGACAAAACAGAGAGAAAGAGAGAGAAGAAGAAAAATAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAATAACAAAACAAAACACTAATGTTAAGATACCCCCCACTGATACCAAAGCACACATTAGATGTCTTAATCGTTTCCGTTCTATTCTGCACCGGTTGCGCATCTCCGTTGTTGCATTGTGCAAGGCGTTTACATACTTCCGAAACAACAACAAACACATTTGTTGTTCCTTTTTTCACCGTCTACTCCTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTATCTCGTCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTTACATTAGCCCGGAAAGGTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATACATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGTTTTCACCTGTTTCATCAATCACACCTACTG-TCCTTATTGACTGTTTTGGACGTGGTAAAGTATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACCGATTCGCACCGTACAATTG] [+] EMBL BM620729 [CCGAAACTAATTGCGTGTTTTCTCGAGAGTTAAGAAAAGTACTTACAAAAAAGAAACTATACGCTTGTGTACAACACGCACCAACCAAAATTTCTCGCCTCTTTACTATTCTTCATCTTTCCTCTTTTCTAACTAGTAACTAACTAACTGCGAGCGTGGAGGAAGTAAAACACATTACTGATACACTAGCAACTTAATGCATCGTCCTTAATAATAATGCAAAATCAAACACATTCATACAAACACAGACAGGCAGACAGACAAACGAGAAGAAGAGAACTACAAACAAATCTAACAAAAGAACCATAAAGCACGCATTGGAGAAAACCAAAAAAACATTGAGAGAAAAGACAAACACTGTATTAGACAGGAGACAAAACAGAGAGAAAGAGAGAGAAGAAGAAAAATAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAATAACAAAACAAAACACTAATGTTAAGATACCCCCCACTGATACCAAAGCACACATTAGATGTCTTAATCGTTTCCGTTCTATTCTGCACCGGTTGCGCATCTCCGTTGTTGCATTGTGCAAGGCGTTTACATACTTCCGAAACAACAACAAACACATTTGTTGTTCCTTTTTTCACCGTCTACTCCTTCCTCGATCGTACGACACAG ] [+] EMBL BX615513 [ AAACAACAACAAACACATTTGTTGTTCCTTTTTTCACCGTCTACTCCTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTATCTCGTCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTTACATTAGCCCGGAAAGGTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATACATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGTTTTCACCTGTTTCATCAATCACACCTACTG TCCTTATTGACTGTTTTGGACGTGGTAAAGTATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACCGATTCGCACCGTACAATTG] [+] EMBL BX608357 [ CAACAACAAACACATTTGTTGTTCCTTTTTTCACCGTCTACTCCTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTATCTCGTCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTTACATTAGCCCGGAAAGTTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATACATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGTTTTCACCTGTTTCATCAATCACACCTACTGTTCCTTATTGACTGTTTTGGACGTGGTAAAATATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATAC ] [+] EMBL BX618546 [ AAAAAGTAACATACAATTTACATTATCCCGGAAAGGTTAATTATGCAAACATTGTTGATCGGGCTTAGTATATATATACATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGTTTTCACCTGTTTCATCAATCACACCTACTGTTCCTTATTGACTGTTTTGGACGTGGTAAAGTATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCA ] consensusID : consensus_6393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [GCAGTTCTGTGTGCAGCGAAAAGGAAGTGTTAGTGTGCGGAAGCAAAAGAAAAGAAGAAAAGAAAAAAGTGCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACCGATTCGCACCGTACAATTGTTGAGAAGAGAAAAAACGGAATTGATTTTCACAGTTTGTCCTCTACACGGTCGGAGTGATGAGTGGGCAAGGGGTTTTATTTATTTGGACGAAAATAAACCAGAAGTAAAATAGATAGTGAATTGCTTTTCTGAGTTATTGTTTCTTGTTTCCGTTCCGTTGTCGTTTGCACTTAAATCATGGAAGCCAATAATGGTTTGTTTTGTTCTTTTTTTTAATACTGTGTTGATTCGCCTTTTCGTTGGGATTATCCGAACGCATTTGCAACACACACACACACTCACATAGCATGGAGAAGATGAGCAGGCAAACAACCATGGAAAATTATTATACATTGTATGAATGAATTTTTGATAATCTAATT] [+] EMBL BX610987 [GCAGTTCTGTGTGCAGCGAAAAGGAAGTGTTAGTGTGCGGAAGCAAAAGAAAAGAAGAAAAGAAAAAAGTGCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACCGATTCGCACCGTACAATTGTTGAGAAGAGAAAAAACGGAATTGATTTTCACAGTTTGTCCTCTACACGGTCGGAGTGATGAGTGGGCAAGGGGTTTTATTTATTTGGACGAAAATAAACCAGAAGTAAAATAGATAGTGAATTGCTTTTCTGAGTTATTGTTTCTTGTTTCCGTTCCGTTGTCGTTTGCACTTAAATCATGGAAGCCAATAATGGTTTGTTTTGTTCTTTTTTTTAATACTGTGTTGATTCGCCTTTTCGTTGGGATTATCCGAACGCATTTGCAACACACACACACACTCACATAGCATGGAGAAGATGAGCAGGCAAACAACCATGGAAAATTATTATACATTGTATGAATGAATTTTTGATAATCTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6393#0 CCGAAACTAATTGCGTGTTTTCTCGAGAGTTAAGAAAAGTACTTACAAAAAAGAAACTAT 60 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 ACGCTTGTGTACAACACGCACCAACCAAAATTTCTCGCCTCTTTACTATTCTTCATCTTT 120 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 CCTCTTTTCTAACTAGTAACTAACTAACTGCGAGCGTGGAGGAAGTAAAACACATTACTG 180 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 ATACACTAGCAACTTAATGCATCGTCCTTAATAATAATGCAAAATCAAACACATTCATAC 240 consensus_6393#1 --------------------------------------GCAGTTCTGTGTGCAGCGAAAA 22 *** ** * * consensus_6393#0 AAACACAGACAGGCAGACAGACAAACGAGAAGAAGAGAACTACAAACAAATCTAACAAAA 300 consensus_6393#1 GGAAGTGTTAGTGTGCGGAAGCAAAAGAAAAGAAGAAAA---GAAAAAAGTGCAC--ACA 77 * * * **** ** ******* ** *** ** * * * * consensus_6393#0 GAACCATAAAGCACGCATTGGAGAAAACCAAAAAAACATTGAGAGAAAAGACAAACACTG 360 consensus_6393#1 CAACTACACGACATACAT-ACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCA 136 *** * * ** *** * * * *** *** **** * **** * * * consensus_6393#0 TATTAGACAGGAGACAAAACAGAGAGAAAGAGAGAGAAGAAGAAAAATAAAAAGAAGAAG 420 consensus_6393#1 CGTTTGGTTTGGTGCGCAATA-ATTCAATTGCAAACATACGCACCGATTCGCACCGTACA 195 ** * * * ** * * ** * * * * ** * * consensus_6393#0 AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAG 480 consensus_6393#1 ATTGTTGAGAAGAGAAAAAACGGAATTGATTTTCACAGTTTGTCCTCTACACGGTCGGAG 255 * ****** ** ** * * * * * * * * ** consensus_6393#0 AAATAACAAAACAAAACACTAATGTTAAGATACCCCCCACTGATACCAAAGCACACATTA 540 consensus_6393#1 TGATGAGTGGGCAAGGGGTTT-TATTTATTTGGACGAAAATAA-ACCAGAA-GTAAAATA 312 ** * *** * * ** * * * * * * **** * * * ** consensus_6393#0 GATGTCTTAAT-CGTTTCCGTTCTATTCTGCACCGGTTGCGCATCTCCGTTGTTGCATTG 599 consensus_6393#1 GATAGTGAATTGCTTTTCTGAGTTATTGTTTCTTGTTTCCGT---TCCGTTGTCGTTT-- 367 *** * * * **** * **** * * ** ** ******** * * consensus_6393#0 TGCAAGGCGTTTACATACTTCCGAAACAACAACAAACACATTTGTTGTTCCTTTTTTCAC 659 consensus_6393#1 ------GCACTTAAAT-CATGGAAGCCAATAATGGTTTGTTTTGTTCTTTTTTTTAATAC 420 ** *** ** * * * *** ** ****** ** **** ** consensus_6393#0 CGTCT--ACTC-CTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTAT 716 consensus_6393#1 TGTGTTGATTCGCCTTTTCGTTGGGATTATCC-GAACGCATTTGCAACACACACACACA- 478 ** * * ** * * *** * * * * * * ***** * ** * * * consensus_6393#0 CTCGTCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTT 776 consensus_6393#1 CTCA-CATAGCATGGAGAAGATGAGCAGGCAAACAACCATGGAAAATTATTATACA--TT 535 *** * ** * * **** ***** * *** * **** ** ***** ** consensus_6393#0 ACATTAGCCCGGAAAGGTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATAC 836 consensus_6393#1 GTATGAAT---GAATTTTTGATAATCTAATT----------------------------- 563 ** * *** ** ** * ** consensus_6393#0 ATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCG 896 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 TTGTTTTCACCTGTTTCATCAATCACACCTACTGTCCTTATTGACTGTTTTGGACGTGGT 956 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 AAAGTATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTT 1016 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 CTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTT 1076 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 GGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTA 1136 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 TCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAG 1196 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 CTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAA 1256 consensus_6393#1 ------------------------------------------------------------ consensus_6393#0 TTGCAAACATACGCACCGATTCGCACCGTACAATTG 1292 consensus_6393#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||