These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 791 fasta sequence [TTTTTTTGTGTGTGTGGGTATAAGTATGGCTGCTATTCTGCGGGATACCTTAACATAACATTAACAACACAAATCCTTCTCCCCAACAACCGGGAGCSCAACACCTTGGGGAGGAAAACGCTTCGAGTSCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTTAAATCAAACCCCCGCTAACTTTTTACATCACTCACACGAGCGAAAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAAGTCGTAACAAAAGACGCAATCGCTCGGAAGTTTTCCCTCGGTACCCAATACTTGGAGCTAAAGCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAAGTGGCCCGGTGGGTTCGGAACTTTCATCGAAAAAA] [+] EMBL AGA281526 [TTTTTTTGTGTGTGTGGGTATAAGTATGGCTGCTATTCTGCGGGATACCTTAACATAACATTAACAACACAAATCCTTCTCCCCAACAACCGGGAGCSCAACACCTTGGGGAGGAAAACGCTTCGAGTSCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTTAAATCAAACCCCCGCTAACTTTTT ] [+] EMBL BM589578 [ ccgGGAAAACGCTTCGAGTGCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTTAAATCAAACCCCCGCTAACTTTTTACATCACTCACACGAGCGAAAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAAGTCGTAACAAAAGACGCAATCGCTCGGAAGTTTTCCCTCGGTACCCAATACTTGGAGCTAAAGCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAAGTGGCCCGGTGGGTTCGGAACTTTCATCGAAAAAA] [+] EMBL BX617681 [ AGTTAAAATAAGGATCGATAAATTTAAATCAAACCCCCGCTAACTTTTTACATCATTCACACGAGCGAAAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAAGTCGTAACAAAAGACGCAATCGCTC ] consensusID : consensus_6394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CCGGTACAACCGAGAACGGCGAAAGGCGGGGTGCGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTTTCGCCCAGCTCGCCACCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAATTCCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAGTACTTGGAGCTAAGCCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAGGGTGCCCGGTGGGTTCGGAACTTTCATCGAAAAACAGAGGGTCGCTCTACATTCGAATTCAGCGAAATTGGTCGCACTGCGGTTGCCGTGAAAAGCGCTTTTCTTCTCCCAACTGGAGAAAGCTCAT] [+] EMBL BM643087 [CCGGTACAACCGAGAACGGCGAAAGGCGGGGTGCGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTTTCGCCCAGCTCGCCACCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAATTCCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAGTACTTGGAGCTAAGCCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAGGGTGCCCGGTGGGTTCGGAACTTTCATCGAAAAACAGAGGGTCGCTCTACATTCGAATTCAGCGAAATTGGTCGCACTGCGGTTGCCGTGAAAAGCGCTTTTCTTCTCCCAACTGGAGAAAGCTCAT] consensusID : consensus_6394#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [AAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCNACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGSAGTGCAAATATTGTGCTNNNCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGATGTTATTTATTTACTTATTTT] [-] EMBL AGA283117 [AAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCNACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGSAGTGCAAATATTGTGCTNNNCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGATGTTATTTATTTACTTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6394#0 TTTTTTTGTGTGTGTGGGTATAAGTATGGCTGCTATTCTGCGGGATACCTTAACATAACA 60 consensus_6394#2 ------------------------------------------------------------ consensus_6394#1 ------------------------------------------------------------ consensus_6394#0 TTAACAACACAAATCCTTCTCCCCAACAACCGGGAGCSCAACACCTTGGGGAGGAAAACG 120 consensus_6394#2 ------------------------------------------------------------ consensus_6394#1 ------------------------------------------------------------ consensus_6394#0 CTTCGAGTSCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTT 180 consensus_6394#2 ------------------------------------------------------------ consensus_6394#1 ------------------------------------------------------------ consensus_6394#0 AAATCAAACCCCCGCTAACTTTTTACATCACTCACACGAGCGAAAGTTGGCCGGTTCGGT 240 consensus_6394#2 -------------------------------------------AAGTTGGCCGGTTCGGT 17 consensus_6394#1 -------------------------------------------------------CCGGT 5 **** consensus_6394#0 TCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCT 300 consensus_6394#2 TCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCNACTCGCCCATTCT 77 consensus_6394#1 ACAACCGAGAACGGCGAAAGGCGGGGTGCGTTCTCGCGTGCCCTCCGACTCGCCCATTCT 65 ***** ******************** ****************** ************* consensus_6394#0 CTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCC-ACATGTGGGT 359 consensus_6394#2 CTCCCTATCTACAATGAATCAAACCCAGSAGTGCAAATATTGTGCTNNNCACATGTGGGT 137 consensus_6394#1 CTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCC-ACATGTGGGT 124 **************************** ***************** ********** consensus_6394#0 TTTTTT--CGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAA 417 consensus_6394#2 TTTTTT--CGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAA 195 consensus_6394#1 TTTTTTTTCGCCCAGCTCGCCACCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAA 184 ****** ************* ************************************** consensus_6394#0 TAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAG-CGTTTGAAATCGG 476 consensus_6394#2 TAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGATGTTATTTATTTA 255 consensus_6394#1 TAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAG-CGTTTGAAATCGG 243 ********************************************** *** ** consensus_6394#0 CTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGAC 536 consensus_6394#2 CTTATTTT---------------------------------------------------- 263 consensus_6394#1 CTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGAC 303 **** * consensus_6394#0 AATGGGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGT 596 consensus_6394#2 ------------------------------------------------------------ consensus_6394#1 AATGGGCCGAGCGAGCACCAATTCCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGT 363 consensus_6394#0 TATTTACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAA 656 consensus_6394#2 ------------------------------------------------------------ consensus_6394#1 TATTTACCCAGTACTTGGAGCTAA--GCCAAGACCGGCCCAGACCAGGCGCACCTTCGAA 421 consensus_6394#0 GTCGTAACAAAAGACGCAATCGCTCGGAAGTTTTCCCTCGGTACCCAATACTTGGAGCTA 716 consensus_6394#2 ------------------------------------------------------------ consensus_6394#1 -----AAAAGGGTGCCCGGTGGGTTCGGAACTTTCA-TCGAAAAACAGAGGGTCGCTCTA 475 consensus_6394#0 AAGCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAAGTGGCCCGGTGGGTTCGGAA 776 consensus_6394#2 ------------------------------------------------------------ consensus_6394#1 CATTCGAATTCAGCGAAATTGGTCGCACTGCGGTTGCCGTGAAAAGCGCTTTTCTTCTCC 535 consensus_6394#0 CTTTCATCGAAAAAA--- 791 consensus_6394#2 ------------------ consensus_6394#1 CAACTGGAGAAAGCTCAT 553 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||