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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 810 fasta sequence
[AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAAAGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGCTCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGCCGCCCTCCCTTCTTAGTCTAGATTTCGTCACGAAACAAACAAAAAGACGGTGAGGGGACAGAGACCCCTGGTTCACC]
[+] EMBL BX617080 [AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAAAGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGCTCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGC ]
[+] EMBL BX615183 [ GAGCTCTGTAAAAAAAAACAAAAACACTTTCACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGCCGCCCTCCCTTCTTAGTCTAGATTTCGTCACGAAACAAACAAAAAGACGGTGAGGGGACAGAGACCCCTGGTTCACC]
[+] EMBL BX613583 [ AAAACACATACACACATAATTATCAAACCTTGAACCAGACATTGGCTTTAGTTTCCTTCCTGTAAAGGTTCTAAGGAAGAGTGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATTCATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGATACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGGGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATTTTTGCTAATACAGTTTTGTATCGCCCTCGC ]
[+] EMBL BX614278 [ CAAAAAAAAACCGGGGGCAGATAGGCCAACAACAGAAACACTTAAACTTTACACACCTGAAACACACATCCACACTAAACGAAAACACTTCTCTGGGAGTGTGAGATTAACGGCGATGCCGTTGATCTATAAAACACATTCACACTAAACATACACACACACACAACAAATACAATACACGTACACAGCAAACACTCACCACAAACTTAGTGCTATCGTATTACTCTGTATCTCCTGTTGTTGAGTATCATT ]
consensusID : consensus_6400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[AGAATCCCCGCAGGTTACATTGGCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACACACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCACATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGCAAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNTCGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCCTCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCAACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCACACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGCCGCTTCATCTAGGCCGGCGGCTACNC]
[+] EMBL AL692359 [AGAATCCCCGCAGGTTACATTGGCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAAAGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATCGGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAGAGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCAACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACACACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCACATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGCAAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNTCGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCCTCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCAACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCACACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGCCGCTTCATCTAGGCCGGCGGCTACNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6400#0 AATCTCTGAAAATTATCCGTGCATTTGAGTAAAAGGATCAGTGGAACGTAATGCGGAGAG 60
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAACAAGGAA 120
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 AGTCAAAGTAATAGGATAGTATCTACGGGAGAGTGGCGTACGGTGAAGGACAAGCTGAGC 180
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 TCTGTAAAAAAAAACAAAAACACATACACACATAATTATCAAACCTTGAACCAGACATTG 240
consensus_6400#1 --------------------------------------AGAATCCCCGCAGGTTACATTG 22
** ** * * ******
consensus_6400#0 GCTTTAGTTTCCTTCCTGTAAAGGTTCTAAG-GAAGAGGGAGGCAAAGATAGGGGATGAA 299
consensus_6400#1 GCTTTATTTCCTTCCTGGTAAAGGTTCTAATTGAAGAGGGAGGCAAAGATAGGGGATGAA 82
****** ** * * * ************* ****************************
consensus_6400#0 AGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATC 359
consensus_6400#1 AGGTACATACACAATCGAGCATACATTCCTAGCCATATACTAAGATGGAGGGAAACCATC 142
************************************************************
consensus_6400#0 GGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAG 419
consensus_6400#1 GGTAACGTAACATAACGCCATCACGCAGCAGTTAGCAGCAGCTTAAGATAAAAGCGCTAG 202
************************************************************
consensus_6400#0 AGACTTCGCTATCGCATACAAGCATACAACAACAAAAAAAAACCGTGGGCAGATAGGCCA 479
consensus_6400#1 AGACTTCGCTATCGNATACAAGCATACAACAACCAAAAAAAACCGTGGGCAGATAGGCCA 262
************** ****************** **************************
consensus_6400#0 ACAACAGAAACACTTAAACTTTACAC-ACCTGAA-ACACACATCCACACTAAACGAAA-A 536
consensus_6400#1 ACAACAGAAACNCTTAAACTTTACACGACCTGAAGACACAAATACACACTAAACGAAACA 322
*********** ************** ******* ***** ** ************** *
consensus_6400#0 CACT-TCTCTGGGAGTGGG---AGATTAACGGCG-ATGCCGT-TGATCTATAAAACAC-- 588
consensus_6400#1 CACTCTCTCTGGGAGTNGGTNNNGATTNACGGCNGATGCCGTATGATCTATAAAACACCA 382
**** *********** ** **** ***** ******* ***************
consensus_6400#0 -ATTCAC-ACTAAACA-TACAC-ACAC-ACAC-AACAAATACA--ATACACGTACACAGC 640
consensus_6400#1 CATTCACCACTAAACNATACACCACACCACACCAACNAATACACAGTACACGTACACAGC 442
****** ******* ***** **** **** *** ****** **************
consensus_6400#0 AAACACT-CACCACAAACTTAGTGCTATCGT--ATTACTCTGTA-TCTCC----TGTTGT 692
consensus_6400#1 AAACACNTCACCACAAACTTAGTGCTATCGGTAATTNCTCTGTAATCTCCCTGGTATGNT 502
****** ********************** *** ******* ***** * * *
consensus_6400#0 TGAGTA-TCATTTTT----GCTAATACAGTTTT-----GTATCGCCCT---CGCCGCCCT 739
consensus_6400#1 CGAGTACTCACTNTGCNCAGCTAATACACGCCCAATGGNAGTCGNNCCTCGCGCCGGGCC 562
***** *** * * ********* *** * ***** *
consensus_6400#0 CCCTTCTTAGTCTAGATTTCGTCACGAA------ACAAACAAAAAGACGGTGAGGGGACA 793
consensus_6400#1 TCCCCTTTACTATACAGGTCCTCAAGAATATTTCGGNTTCCACAAAACACCAAANAACCA 622
** *** * ** * ** *** *** * * ** ** * **
consensus_6400#0 GAGACCCCTGGTTCACC------------------------------------------- 810
consensus_6400#1 ACACAAACAGACACGANGGTAGAGAGGGGAACAAGGAAGACACACCCCCTGGGGTTTCCA 682
* * *
consensus_6400#0 ------------------------------------------------------------
consensus_6400#1 CACCCTTAAAACGTTACCCCTANTACNGGTGAGGCNAANTATCGGCCCAAACTTGGCNGC 742
consensus_6400#0 --------------------------
consensus_6400#1 CGCTTCATCTAGGCCGGCGGCTACNC 768
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||