These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1326 fasta sequence [CCGCCCACGCGTCCGACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTTATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGGGTGCACTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGACCGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCTCTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCG-AGGAGCGTTGGTTCCGCCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGAGGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGGCATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAAGGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAAGGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCAGGGACTGCGGCCGAACCTCGGTACGCTGAACGGCATCCTGCAGACGGTGACAACGATCGGTGGGTACAATCATCCGCGCACGTACGCGCTCAAAACGTTGGCCGAGTTTAAGCAGCTCGGTATCGAACCGTCCCTGGCGAGCTGGTACTACATGCTGGTCATCTTCTGTCGCGAACGGGGCCCGGTCAGCCACGTGCTGCACGACATTATGAACGAGATCGAGGGCAAAGAGTTTACGATCCAGGATCCGAAGGATACGTTCTTCTTCGTGACGGCGATGGACGTGTGCCGCAACCATCTGCACGA] [+] EMBL BM585136 [CCGCCCACGCGTCCGACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTTATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGGGTGCACTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGACCGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCTCTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCGAAGGAGCGTTGGTTCCGCCA ] [+] EMBL BM616324 [ ccgCTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGACCGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCTCTGCTTCTACAACCACGAGGACACGCT ] [+] EMBL BM640850 [ CAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGACCGATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCTCTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCG AGGAGCGTTGGTTCCGCCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGAGGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGGCATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAAGGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAAGGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCA ] [+] EMBL BM623379 [ ccgGCTGCCGGAACAGTTCATCG AGGAGCGTTGGTTCCGCCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGAGGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGGCATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAAGGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAAGGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCAGGGACTGCGGCCGAACCTCGGTACGCTGAACGGCATCCTGCAGACGGTGACAACGATCGGTGGGTACAATCATCCGCGCACGTACGCGCTCAAAACGTTGGCCGAGTTTAAGCAGCTCGGTATCGAACCGTCCCTGGCGAGCTGGTACTACATGCTGGTCATCTTCTGTCGCGAACGGGGCCCGGTCAGCCACGTGCTGCACGACATTATGAACGAGATCGAGGGCAAAGAGTTTACGATCCAGGATCCGAAGGATACGTTCTTCTTCGTGACGGCGATGGACGTGTGCCGCAACCATCTGCACGA] consensusID : consensus_6404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [CCGGCGGTGCAAAAACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTTATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGGGTGCACTCGCGCAACCACACGCTGACGTACGGCAAAGTGTTCAGCGCATCACAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGACCGATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCTCT] [+] EMBL BM594898 [CCGGCGGTGCAAAAACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTTATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGGGTGCACTCGCGCAACCACACGCTGACGTACGGCAAAGTGTTCAGCGCATCACAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGACCGATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6404#0 CCGCCCACGCGTCCGACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATT 60 consensus_6404#1 CCGGCGGTGCAAA-AACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATT 59 *** * ** ********************************************* consensus_6404#0 TATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACG 120 consensus_6404#1 TATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACG 119 ************************************************************ consensus_6404#0 GGTGCACTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCAC 180 consensus_6404#1 GGTGCACTCGCGCAACCACACGCTGACGTACGGCAAAGTGTTCAGCGCATCACAAAGCAC 179 ************************* ************************* ******** consensus_6404#0 CTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGA 240 consensus_6404#1 CTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGA 239 ************************************************************ consensus_6404#0 GAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTC 300 consensus_6404#1 GAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTC 299 ************************************************************ consensus_6404#0 CGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCT 360 consensus_6404#1 CGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCT 359 ************************************************************ consensus_6404#0 GATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAA 420 consensus_6404#1 GATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAA 419 ************************************************************ consensus_6404#0 GGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCC 480 consensus_6404#1 GGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCC 479 ************************************************************ consensus_6404#0 GCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGAC 540 consensus_6404#1 GCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGAC 539 ****************************************** ***************** consensus_6404#0 CGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCT 600 consensus_6404#1 CGATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCT 599 ********* ************************************************** consensus_6404#0 GCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCT 660 consensus_6404#1 GCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCT 659 *************************************** ******************** consensus_6404#0 CTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCGAGGAGCGTTGGTTCCG 720 consensus_6404#1 CT---------------------------------------------------------- 661 ** consensus_6404#0 CCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGA 780 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 GGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGG 840 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 CATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAA 900 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 GGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAA 960 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 GGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCA 1020 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 GGGACTGCGGCCGAACCTCGGTACGCTGAACGGCATCCTGCAGACGGTGACAACGATCGG 1080 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 TGGGTACAATCATCCGCGCACGTACGCGCTCAAAACGTTGGCCGAGTTTAAGCAGCTCGG 1140 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 TATCGAACCGTCCCTGGCGAGCTGGTACTACATGCTGGTCATCTTCTGTCGCGAACGGGG 1200 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 CCCGGTCAGCCACGTGCTGCACGACATTATGAACGAGATCGAGGGCAAAGAGTTTACGAT 1260 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 CCAGGATCCGAAGGATACGTTCTTCTTCGTGACGGCGATGGACGTGTGCCGCAACCATCT 1320 consensus_6404#1 ------------------------------------------------------------ consensus_6404#0 GCACGA 1326 consensus_6404#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||