These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 882 fasta sequence [GCATTGTGGAA-CAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGCCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTC-GGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAATGTGGCACAACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGTAAATTGTTTTA-TTTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAACTTGTTGACTATTTTAGTGTTATGTTTGTAACTTGTACTACTTTATTACACATATTAAAACATGT] [+] EMBL CNS09ITV [GCATTGTGGAA CAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGCCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCCCCGGCATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTC GGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAATGTGGCACAACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGTAAATTGTTTTA TTTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAACTTGTTGACTATTTTAGTGTTATGTTTGTA ] [+] EMBL BX626324 [ TTGTGGAACCAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTC GGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGAT ] [+] EMBL BM620527 [ ccgTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTC GGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAATGTGGCACAACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGAAAATTGTTTTATTTTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAA ] [-] EMBL CNS09ITW [ ACGGGCTTCGGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAA GGCGCCCCACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGTAAATTGTTTTA TTTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAACTTGTTGACTATTTTAGTGTTATGTTTGTAACTTGTACTACTTTATTACACATATTAAAACATGT] consensusID : consensus_6406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [GGCCAGAACCGGCACGTAGGCCGGCATTGTGGAACCAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTGTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGGAATCAAGGNCATGGGCAATCGGGNGGAGGCAAGGACCTGGACGTTNCGGGGGACTCCACGGGACGGGGAAACCCGGCGGTACAGCANTCAGTATTGCCGACGGAAGGAACGATGGAAG] [+] EMBL BX468329 [GGCCAGAACCGGCACGTAGGCCGGCATTGTGGAACCAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTGTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGGAATCAAGGNCATGGGCAATCGGGNGGAGGCAAGGACCTGGACGTTNCGGGGGACTCCACGGGACGGGGAAACCCGGCGGTACAGCANTCAGTATTGCCGACGGAAGGAACGATGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6406#0 -----------------------GCATTGTGGAAC-AAACTAAACAAAACATAAAAAAAT 36 consensus_6406#1 GGCCAGAACCGGCACGTAGGCCGGCATTGTGGAACCAAACTAAACAAAACATAAAAAAAT 60 ************ ************************ consensus_6406#0 AATGTAAATCAGAACGGATCAGGACCGGGAACGTCGCCAGGACTGCGATCGAAATCGATA 96 consensus_6406#1 AATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATA 120 ************************************ *********************** consensus_6406#0 CAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTA 156 consensus_6406#1 CAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTA 180 ************************************************************ consensus_6406#0 CCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTA 216 consensus_6406#1 CCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTA 240 ************************************************************ consensus_6406#0 TAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGA 276 consensus_6406#1 TAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGA 300 ************************************************************ consensus_6406#0 CTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCA 336 consensus_6406#1 CTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCA 360 ************************************************************ consensus_6406#0 CCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTA 396 consensus_6406#1 CCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTA 420 ************************************************************ consensus_6406#0 TCAGGACTGGCACAGATT-TCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGG 455 consensus_6406#1 TCAGGACTGGCACAGATTGTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGG 480 ****************** ***************************************** consensus_6406#0 ACGGGCTTCGGG--ATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGG 513 consensus_6406#1 ACGGGCTTCGGGGAATCAAG---GNCATGGGCAATCGGGNGGAGGCAAGGACCTGGACG- 536 ************ **** * * *** ** * ** ** *** * ***** consensus_6406#0 GAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTA 573 consensus_6406#1 ---TTNCGGGGGACTCCACGGGACG--GGGAAACCCGGCGGTACAGCANTCAGTATTGCC 591 ** * ** ** * * * * * * ** * * * consensus_6406#0 GAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAA 633 consensus_6406#1 GACGGAAGGAACGATGGAAG---------------------------------------- 611 ** * **** consensus_6406#0 AATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAA 693 consensus_6406#1 ------------------------------------------------------------ consensus_6406#0 ATGTGGCACAACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATG 753 consensus_6406#1 ------------------------------------------------------------ consensus_6406#0 TAGACCGGGTCAGGTAAATTGTTTTATTTTTTTATTTTTATTCAAGCTAAAAGGCTACAA 813 consensus_6406#1 ------------------------------------------------------------ consensus_6406#0 ATAACTTGTTGACTATTTTAGTGTTATGTTTGTAACTTGTACTACTTTATTACACATATT 873 consensus_6406#1 ------------------------------------------------------------ consensus_6406#0 AAAACATGT 882 consensus_6406#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||