These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6407#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 734 fasta sequence [TTTTTTTTGACGTGTTTAAAATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTCTCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACAGCAGTTAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTCCGGGAAAAATGTTGTTGGCTGTTTCCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATCCCTTTGCGATCCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTCCAAGACCCTTACAGACTTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTTATGCGCTCCTCGGCCAGGGGGGAAAAGAATTTCGCCTTCACGATGATCGGGCC-GCAAGTTTTCGGGAGTTCACCGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTCTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCAGGTTCCACAAATGTAAAAAGTTAATGGTCGGGCAGAACTTGTGGTTTCGGTTAAGGTGGAAGTTTCGCATACCGACCTTGCCGAAGTAACCCGGATGGTATTTGTCGAAGTTGAAACGGTGATGGTGCATACCACCAGCTTTACCGCGACCCCCAGGATGCTTAC] [+] EMBL CNS0968O [TTTTTTTTGACGTGTTTAAAAAATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTCTCTGCTTCATCTTCTCTTCACTCCTGTTTGTGTTTTTTTGTACGTGTACGATGCGTAACAGCAGTTAGGCACACCACCATGCTCCACACATTCACGCACAGGAAATACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTTCGGGAGAAATGTTGTAGGCTGTTTGCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATTTCTTTGCGATCCATCCCCGAAGCACTTCGAGCATGTAACGTCGGTTTGTGTTTACAAGACCCTTACAGACTTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTGATGCGCTCCTCGGCCAGGCGGGAAAAGAATTTCGCCTTCACGATGATCGGGCCAGCAAGTTTTCGGGAGTCCACCGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTCTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCAGGTTCCACAAATGTA ] [+] EMBL CNS09HR6 [ ACGTGTTTAAAATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTCTCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTTTACGTTTACGATGCGTAACAACAGTTAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTCCGGGAAAAATGTTGTTGGCTGTTTCCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATCCCTTTGCGATCCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTCCAAAACCCTTACAGACTTAAGCCCGCAGCACGCAAGCCCCACCGGCGGCCTTTATGCCCTCCTCGGCCAG ] [+] EMBL CNS09QOY [ ATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTCTCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACAGCAGTAAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTCCGGGAAAAATGTTGTGGGCTGTTTCCCTCCGGAATCGGGCGCAAAAGCGATACCGCAGAACAACTGCATCCCTTTGCGATCCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTTCAAGACCCTTACAGACTTAAGCCCGCAGCACGCAAGCCCCACCGGCGGCCTTTATGCGCTCCTCGGCCAGGGGGGAAAAGAATTTCGCCTTCACGATGATCGGGCC GCAAGTTTTCGGGAGTTCACCGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTTTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCAGGTTCCACAAATGTTAAAAGTTAATGGTCGGGCAGAACTTGTGGTTTCGGTTAAGGTGGAAGTTTCGCATACCGACCTTGCCGAAGTAACCCGGATGGTATTTGTCGAAGTTGAAACGGTGATGGTGCATACCACCAGCTTTACCGCGACCCCCAGGATGCTTAC] [+] EMBL CNS09DW6 [ ccCTCCACCCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACAACAGTAAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTGCGGGAAAAATGTTGTTGGCTGTTTCCCTCCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTTCATCCCTTTGCGATCCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTCCAAAACCCTTACAGACTTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTTATGCGCTCCTCGGCCAGGGGGGAAAAGAATTTCGCCTTCACGATGATCGGGCC GCAAGTTTTCGGGATTTCACCGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTCTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCAGGCTCCACAAATGTAAAA ] consensusID : consensus_6407#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [TTTTTTTGTGCTATCCCAACCATCTAGTTTCTGCCAGTGTGGTGCTACTGTTGGCAGCTGCCGTGCTTGCCGACGTTCGCTGCCCACCGCAGGACGATCCGGAGCAACCGCCCGTCCTGCTAGCGCATCCCACCGATTGTGACAAGTTCCTGATCTGCAACCACGGAACGCCCGTCGTCAGCAAGTGTCCACCCGGGTTGCTGTGGAATGACTCCCAGAAGCAGTGCGACTACCCCGCGCAGGCACAGTGCGCACCGGGTGTGACGCCCAACACTGAACCCGCTTCCAAACCGTCACCCAACTGTCCGCCCGAATACGATCCCGACCATATGGTGTACATTCCGCACGAAACTGACTGTGGGAAGTATTACATTTGCGATCCGTACGGCGTTGAGCTGGAGCAGACGTGCCCTTCCGGGTTGCACTGGAATCCGGTCGTTAACTATTGCGACTTCCCAGAGTTGGCGCAGTGTGAAGAGTGAAGTATCGCTCAAAGTGCTCGAGCTGTTCGCCAATCGACATCGCCAAGCTGTGCTTGAAGTGTGCCACTGTGGCTAAGTAGTTGTAAGAAAAATCCCCTTCTCAACAACCACAACAAGGAATGGGGGTTTCTTCTCGTGTCGATATCAGGTACTTGAGACGGAGTCGAAGACATGATCGGTCACGCTG] [+] EMBL BX625330 [TTTTTTTGTGCTATCCCAACCATCTAGTTTCTGCCAGTGTGGTGCTACTGTTGGCAGCTGCCGTGCTTGCCGACGTTCGCTGCCCACCGCAGGACGATCCGGAGCAACCGCCCGTCCTGCTAGCGCATCCCACCGATTGTGACAAGTTCCTGATCTGCAACCACGGAACGCCCGTCGTCAGCAAGTGTCCACCCGGGTTGCTGTGGAATGACTCCCAGAAGCAGTGCGACTACCCCGCGCAGGCACAGTGCGCACCGGGTGTGACGCCCAACACTGAACCCGCTTCCAAACCGTCACCCAACTGTCCGCCCGAATACGATCCCGACCATATGGTGTACATTCCGCACGAAACTGACTGTGGGAAGTATTACATTTGCGATCCGTACGGCGTTGAGCTGGAGCAGACGTGCCCTTCCGGGTTGCACTGGAATCCGGTCGTTAACTATTGCGACTTCCCAGAGTTGGCGCAGTGTGAAGAGTGAAGTATCGCTCAAAGTGCTCGAGCTGTTCGCCAATCGACATCGCCAAGCTGTGCTTGAAGTGTGCCACTGTGGCTAAGTAGTTGTAAGAAAAATCCCCTTCTCAACAACCACAACAAGGAATGGGGGTTTCTTCTCGTGTCGATATCAGGTACTTGAGACGGAGTCGAAGACATGATCGGTCACGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6407#0 TTTTTTTTGACGTGTTTAAAATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTC 60 consensus_6407#1 -TTTTTTTGTGCTATCCCAACCATC---------TAGTTTCTGCCAGTGTGGTGCTACTG 50 ******** * * ** ** ** ***** * * * * * *** consensus_6407#0 TCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACA 120 consensus_6407#1 TTGGCAGC-TGCCGTGCTTGCCGACGTTCGCTGCCCACCGCAGG---ACGATCCGGAGCA 106 * ** * * * * * *** * * * * * ***** ** * ** consensus_6407#0 GCAGTTAGGCACACCACCATGCTCCACACATT----CACGCACAGGAAAAACA--CACGA 174 consensus_6407#1 ACCGCCCGTCCTGCTAGCGCATCCCACCGATTGTGACAAGTTCCTGATCTGCAACCACGG 166 * * * * * * * **** *** ** * * ** ** **** consensus_6407#0 AACGTTGTACCAAAAACAAAAACGGCAACATGCT-CGGGAGGGTGTCCGGGAAAAATGTT 233 consensus_6407#1 AACGCC-CGTCGTCAGCAAGTGTCCACCCGGGTTGCTGTGGAATGACTCCCAGAAGCAGT 225 **** * * *** * * * * * * ** * * ** * consensus_6407#0 GTTGGCTGTTTCCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATCCCT 293 consensus_6407#1 GC-GACTACCCCGCGCAGGCACAGTGCGCACCGGGTGTGACGCCCAACA-CTGAACCCGC 283 * * ** * * ** * * ***** * * *** **** *** * ** consensus_6407#0 TTGCGATCCATCCCCGAAGCACTC-CGAGCATGTAACGTCGGTTTGTGTTTCCAAGACCC 352 consensus_6407#1 TTCCAAACCGTCACCCAACTGTCCGCCCGAATACGATCCCGACCATATGGTGTACATTCC 343 ** * * ** ** ** ** * * * ** * ** * * ** consensus_6407#0 TTACAGACTTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTTATGCGCTCCTCGGCC 412 consensus_6407#1 GCACGAAACTGACTGTG------GGAAGTATTACATTTGCGATCCGTACGGCGTTGAGCT 397 ** * * * * * *** * ** * * * ** * ** consensus_6407#0 AGGGGGGAAAAGAATTTC--GCCTTCACGATGATCGGGCCGCAAGTTTTCGGGAGTTCAC 470 consensus_6407#1 GGAGCAGACGTGCCCTTCCGGGTTGCACTGGAATCCGGTCGTTAACTATTGCGACTTCCC 457 * * ** * *** * * *** *** ** ** * * * * ** *** * consensus_6407#0 CGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGG 530 consensus_6407#1 AGAGTTGGCGCAGTGTGAAGAGTGAAGTATCGCTCAAAGTGCTCG-----AGCTGTTCGC 512 * * * **** ***** * * ** * * * ** *** consensus_6407#0 GGTTCTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCA-GGTTCCACAAATGTAAAAAG 589 consensus_6407#1 CAATCGACATCGCCAAGCTGTGCTTGAAGTGTGCCACTGTGGCTAAGTAGTTGTAAGAA- 571 ** * ***** * * ** * * *** ** * * ***** ** consensus_6407#0 TTAATGGTCGGGCAGAACTTGTGGTTTCGGTTAAGGTGGAAGTTTCGCATACCGACCTTG 649 consensus_6407#1 --AAATCCCCTTCTCAACAACCACAACAAGGAATGGGGGTTTCTTCTCGTGTCGATATC- 628 ** * * *** * * ** ** *** * * *** * consensus_6407#0 CCGAAGTAACCCGGATGGTATTTGTCGAAGTTGAAA-CGGTGATGGTGCATACCACCAGC 708 consensus_6407#1 ---AGGTACTTGAGACGGA----GTCGAAGACATGATCGGTCACGCTG------------ 669 * *** ** ** ******* * **** * * ** consensus_6407#0 TTTACCGCGACCCCCAGGATGCTTAC 734 consensus_6407#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||