These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 888 fasta sequence [ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTTTTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATTTGTACCACCTGGGCGTATGTATGC-TAAGTTC-GCTTTTATCCCTATTATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT--GGCAACACCAGGGGAAGAACGATAGGAT-TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT-TAAAATA-ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAATATTAAAATGTAAAATGTA] [+] EMBL BX609298 [ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTTTTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATTTGTACCACCTGGGCGTATGTATGC TAAGTTC GCTTTTATCCCTATTATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT GGCAACACCAGGGGAAGAACGATAGGAT TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT TAAAATA ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCA ] [+] EMBL BX624334 [ acgtaGGGCGTATGTATGCNTAAGTACAGCTTTTATCCCTGTAATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAAC GAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATATATTTCAGTTCAGGCATGTATGGTAGGGCAACACCAGGGGAAGAACGATAGGATAGGACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTTATAAAATANATGCGTAAATATGCGGCGGTTCAGCTTCTCGTCTCGTTTGTGAAGGATATTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGC ACTCTCCCTGCCACAATACCAGCAATGGCTGCGGATGAAGCATGGCTGTTAGTNAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATCAGCAGTNAANTTt ] [+] EMBL BX625310 [ AGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT GGCAACACCAGGGGAAGAACGATAGGAT TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT TAAAATA ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGGCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAATATTAAAATGTAAAATGTA] consensusID : consensus_6421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GAAACTTTATCATTTTAAAATAATGCGTAAATATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTATGCTAGGAGAAGAAAGCACTTACACACACACAAACCACTATTTTTAGCGGTGGAGAAAGACGGTGATTGTCTTAAACAAAAGGATAGTAGTAACAACACTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTGTACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAATATTAAAATGTAAAATGTGTGCCCCGCGCGGAGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA] [+] EMBL CNS09LEQ [GAAACTTTATCATTTTAAAATAATGCGTAAATATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTATGCTAGGAGAAGAAAGCACTTACACACACACAAACCACTATTTTTAGCGGTGGAGAAAGACGGTGATTGTCTTAAACAAAAGGATAGTAGTAACAACACTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTGTACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAATATTAAAATGTAAAATGTGTGCCCCGCGCGGAGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA] consensusID : consensus_6421#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [CAGATCGCCACGAGNNTCAATGGCAGGCTCCCTGCCAAAACTACGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGGATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAATGTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT] [+] EMBL BX469014 [CAGATCGCCACGAGNNTCAATGGCAGGCTCCCTGCCAAAACTACGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGGATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAATGTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6421#0 ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTT 60 consensus_6421#2 ------------------------------------------------------------ consensus_6421#1 ------------------------------------------------------------ consensus_6421#0 TTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATT 120 consensus_6421#2 ------------------------------------------------------------ consensus_6421#1 ------------------------------------------------------------ consensus_6421#0 TGTACCACCTGGGCGTATGTATGCTAAGTTCGCTTTTATCCCTATTATACCGTCATTTTA 180 consensus_6421#2 ------------------------------------------------------------ consensus_6421#1 ------------------------------------------------------------ consensus_6421#0 TGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACT 240 consensus_6421#2 ------------------------------------------------------------ consensus_6421#1 ------------------------------------------------------------ consensus_6421#0 GTGGGTAGATGTATTTCAGTTCTGGCATGTATGGTGGCAACACCAGGGGAAGAACGATAG 300 consensus_6421#2 ------------------------------------------------------------ consensus_6421#1 ------------------------------------------------------------ consensus_6421#0 GATTAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTTTAAAATAATGCGTAAAT 360 consensus_6421#2 ------------------------------------------------------------ consensus_6421#1 ----------------------------GAAACTTTATCATTTTAAAATAATGCGTAAAT 32 consensus_6421#0 ATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTA 420 consensus_6421#2 ------------------------------------------------------------ consensus_6421#1 ATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTT-CCGAGTGCGCTA 91 consensus_6421#0 GTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAA 480 consensus_6421#2 ------------------CAGATCGCCACGAGNNT--CAATGGCAGG-CTCCCTGCCAAA 39 consensus_6421#1 GTGTACTCACTTTTAAGCTAGAACAAAACAAGGCT------------------------- 126 *** * ** ** * consensus_6421#0 ATACCGGCAATGGCTGCG-GATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 539 consensus_6421#2 ACTACGGCAATGGCTGCG-GATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 98 consensus_6421#1 -----AACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 181 *********** ******* ********************************* consensus_6421#0 TACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTA 599 consensus_6421#2 TACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTA 158 consensus_6421#1 TACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTA 241 ************* ******************************************* ** consensus_6421#0 TGCTAGGAGAAGAAAGCACTTACACACAC-ACACACAAACCAC-TATTTTTAGCGGTGGG 657 consensus_6421#2 TGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGG 218 consensus_6421#1 TGCTAGGAGAAGAAAGCACTTACACACAC-----ACAAACCAC-TATTTTTAGCGGTGGA 295 ***************************** ********* *************** consensus_6421#0 ATAAGACGG-TGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCAC 716 consensus_6421#2 ATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCAC 278 consensus_6421#1 GAAAGACGG-TGATTGTCTTAAACAAAA--GGATAGTAGTAACAACACTTGATTTATCAC 352 ******* ******* ********** **************** ************ consensus_6421#0 GCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTT 776 consensus_6421#2 GCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTT 338 consensus_6421#1 GCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTT 412 ************************* ********************* ** ********* consensus_6421#0 TAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTAC-AC-CCCTG 834 consensus_6421#2 TAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTAC-AC-CCCTG 396 consensus_6421#1 TAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTG 472 ********************************* ***** *********** ** ***** consensus_6421#0 -----TGTATTGTGTCAAAAAA-CCGTTCGCGGACGATTAA-TATTAAAA--TGTAAAAT 885 consensus_6421#2 G----TGTATTGTGTCAAAAAA-CCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAAT 451 consensus_6421#1 TACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAA-TATTAAAA--TGTAAAAT 529 ***************** * * ************** **** *** ******** consensus_6421#0 GTA------------------------------------------------- 888 consensus_6421#2 GTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT----- 498 consensus_6421#1 GTGTGCCCCGCGCGG-AGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA 580 ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||