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Anopheles gambiae
cluster # 6421 cluster # 6421       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6421#0 length = 888 sequences # 3  
consensus_6421#1 length = 580 sequences # 1  
consensus_6421#2 length = 498 sequences # 1  

consensusID : consensus_6421#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 888
fasta sequence
                              [ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTTTTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATTTGTACCACCTGGGCGTATGTATGC-TAAGTTC-GCTTTTATCCCTATTATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT--GGCAACACCAGGGGAAGAACGATAGGAT-TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT-TAAAATA-ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAATATTAAAATGTAAAATGTA]

[+] EMBL BX609298             [ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTTTTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATTTGTACCACCTGGGCGTATGTATGC TAAGTTC GCTTTTATCCCTATTATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT  GGCAACACCAGGGGAAGAACGATAGGAT TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT TAAAATA ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCA                                                                                                                                                                             ]
[+] EMBL BX624334             [                                                                                                                             acgtaGGGCGTATGTATGCNTAAGTACAGCTTTTATCCCTGTAATACCGTCATTTTATGGGTAGCACACAAGCGATATGTTAAAC  GAGAGACACGAGCAGAGCCAGTTTAAAACTGTGGGTAGATATATTTCAGTTCAGGCATGTATGGTAGGGCAACACCAGGGGAAGAACGATAGGATAGGACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTTATAAAATANATGCGTAAATATGCGGCGGTTCAGCTTCTCGTCTCGTTTGTGAAGGATATTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGC ACTCTCCCTGCCACAATACCAGCAATGGCTGCGGATGAAGCATGGCTGTTAGTNAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATCAGCAGTNAANTTt                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX625310             [                                                                                                                                                                                                                                 AGAGCCAGTTTAAAACTGTGGGTAGATGTATTTCAGTTCTGGCATGTATGGT  GGCAACACCAGGGGAAGAACGATAGGAT TAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTT TAAAATA ATGCGTAAATATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGGCTCCCTGCCAAAATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATAAGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAATATTAAAATGTAAAATGTA]


>consensus_6421#0 ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTT TTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATT TGTACCACCTGGGCGTATGTATGCTAAGTTCGCTTTTATCCCTATTATACCGTCATTTTA TGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACT GTGGGTAGATGTATTTCAGTTCTGGCATGTATGGTGGCAACACCAGGGGAAGAACGATAG GATTAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTTTAAAATAATGCGTAAAT ATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTA GTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAA ATACCGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCAT ACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTAT GCTAGGAGAAGAAAGCACTTACACACACACACACAAACCACTATTTTTAGCGGTGGGATA AGACGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCT TGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAAT GTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGTGTATT GTGTCAAAAAACCGTTCGCGGACGATTAATATTAAAATGTAAAATGTA



consensusID : consensus_6421#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [GAAACTTTATCATTTTAAAATAATGCGTAAATATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTATGCTAGGAGAAGAAAGCACTTACACACACACAAACCACTATTTTTAGCGGTGGAGAAAGACGGTGATTGTCTTAAACAAAAGGATAGTAGTAACAACACTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTGTACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAATATTAAAATGTAAAATGTGTGCCCCGCGCGGAGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA]

[+] EMBL CNS09LEQ             [GAAACTTTATCATTTTAAAATAATGCGTAAATATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTATGCTAGGAGAAGAAAGCACTTACACACACACAAACCACTATTTTTAGCGGTGGAGAAAGACGGTGATTGTCTTAAACAAAAGGATAGTAGTAACAACACTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTGTACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAATATTAAAATGTAAAATGTGTGCCCCGCGCGGAGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA]


>consensus_6421#1 GAAACTTTATCATTTTAAAATAATGCGTAAATATGCGGTGGTTCAGCTTCCTGTCTCGTT TGTCAAGGATATTCTTTTTCCGAGTGCGCTAGTGTACTCACTTTTAAGCTAGAACAAAAC AAGGCTAACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTC ATACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGT ATGCTAGGAGAAGAAAGCACTTACACACACACAAACCACTATTTTTAGCGGTGGAGAAAG ACGGTGATTGTCTTAAACAAAAGGATAGTAGTAACAACACTTGATTTATCACGCCTTGAT CATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTTTAATGTGG AATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTGTACCCTGT ATTGTGTCAAAAAAACTGCTCGCGGACGATTAATATTAAAATGTAAAATGTGTGCCCCGC GCGGAGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA



consensusID : consensus_6421#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence
                              [CAGATCGCCACGAGNNTCAATGGCAGGCTCCCTGCCAAAACTACGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGGATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAATGTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT]

[+] EMBL BX469014             [CAGATCGCCACGAGNNTCAATGGCAGGCTCCCTGCCAAAACTACGGCAATGGCTGCGGATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGGATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTACACCCCTGGTGTATTGTGTCAAAAAACCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAATGTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT]


>consensus_6421#2 CAGATCGCCACGAGNNTCAATGGCAGGCTCCCTGCCAAAACTACGGCAATGGCTGCGGAT GAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCATACAAAAAGAGAAAGATATGTA ATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTATGCTAGGAGAAGAAAGCACTTA CACACACGACACACAAACCACGTATTTTTAGCGGTGGGATAAGACGGGTGATTGTTTTAA ACAAAAAAAGATAGTAGTAACAACATTTGATTTATCACGCCTTGATCATCGAGAAAGGCA TACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTTTAATGTGGAATTCTATTATTGT ACATTTTAGAGAGCATCCTACCTACCTACACCCCTGGTGTATTGTGTCAAAAAACCGTTC GCGGACGATTAAGTATTNAAAAGTGTAAAATGTATGCCCCGTGAGGGAGGGCAGGATTGT TCTCACGCGCGCGCGGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6421#0      ACTCTAGTGTCTGGCCAGAGCTTCCACAAAGACACAAACCAACGGTCGAAATGGTCCTTT 60
consensus_6421#2      ------------------------------------------------------------
consensus_6421#1      ------------------------------------------------------------
                                                                                  

consensus_6421#0      TTTGGCACAACTTTTCCTTTCCCCCTTCTGGAGTTTTTTTTGTTTTGTTTTAATTTGATT 120
consensus_6421#2      ------------------------------------------------------------
consensus_6421#1      ------------------------------------------------------------
                                                                                  

consensus_6421#0      TGTACCACCTGGGCGTATGTATGCTAAGTTCGCTTTTATCCCTATTATACCGTCATTTTA 180
consensus_6421#2      ------------------------------------------------------------
consensus_6421#1      ------------------------------------------------------------
                                                                                  

consensus_6421#0      TGGGTAGCACACAAGCGATATGTTAAACGAGAGAGACACGAGCAGAGCCAGTTTAAAACT 240
consensus_6421#2      ------------------------------------------------------------
consensus_6421#1      ------------------------------------------------------------
                                                                                  

consensus_6421#0      GTGGGTAGATGTATTTCAGTTCTGGCATGTATGGTGGCAACACCAGGGGAAGAACGATAG 300
consensus_6421#2      ------------------------------------------------------------
consensus_6421#1      ------------------------------------------------------------
                                                                                  

consensus_6421#0      GATTAACGCACGCAAGAATTCAATTGTGAAAACTTTATCATTTTAAAATAATGCGTAAAT 360
consensus_6421#2      ------------------------------------------------------------
consensus_6421#1      ----------------------------GAAACTTTATCATTTTAAAATAATGCGTAAAT 32
                                                                                  

consensus_6421#0      ATGCGGTAGTTCAGCTGCTCGTCTCGTTTGTGAAGGATACTCTTTTTTCCGAGTGCGCTA 420
consensus_6421#2      ------------------------------------------------------------
consensus_6421#1      ATGCGGTGGTTCAGCTTCCTGTCTCGTTTGTCAAGGATATTCTTTTT-CCGAGTGCGCTA 91
                                                                                  

consensus_6421#0      GTGTACTCACTTTTAAGCTAGAACAAAACAAGGCTAACAATGGCAAGTCTCCCTGCCAAA 480
consensus_6421#2      ------------------CAGATCGCCACGAGNNT--CAATGGCAGG-CTCCCTGCCAAA 39
consensus_6421#1      GTGTACTCACTTTTAAGCTAGAACAAAACAAGGCT------------------------- 126
                                         *** *   ** **  *                         

consensus_6421#0      ATACCGGCAATGGCTGCG-GATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 539
consensus_6421#2      ACTACGGCAATGGCTGCG-GATGAAGCATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 98
consensus_6421#1      -----AACAATGGCTGCGCGATGAAGAATGGCTGTTAGTTAAGAATCATTGTGCAGGTCA 181
                             *********** ******* *********************************

consensus_6421#0      TACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTA 599
consensus_6421#2      TACAAAAAGAGAAAGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATATTA 158
consensus_6421#1      TACAAAAAGAGAATGATATGTAATGGCAATTAGCAGTTAATTTCGTGCGCGCCAATAGTA 241
                      ************* ******************************************* **

consensus_6421#0      TGCTAGGAGAAGAAAGCACTTACACACAC-ACACACAAACCAC-TATTTTTAGCGGTGGG 657
consensus_6421#2      TGCTAGGAGAAGAAAGCACTTACACACACGACACACAAACCACGTATTTTTAGCGGTGGG 218
consensus_6421#1      TGCTAGGAGAAGAAAGCACTTACACACAC-----ACAAACCAC-TATTTTTAGCGGTGGA 295
                      *****************************     ********* *************** 

consensus_6421#0      ATAAGACGG-TGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCAC 716
consensus_6421#2      ATAAGACGGGTGATTGTTTTAAACAAAAAAAGATAGTAGTAACAACATTTGATTTATCAC 278
consensus_6421#1      GAAAGACGG-TGATTGTCTTAAACAAAA--GGATAGTAGTAACAACACTTGATTTATCAC 352
                        ******* ******* **********   **************** ************

consensus_6421#0      GCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTT 776
consensus_6421#2      GCCTTGATCATCGAGAAAGGCATACCTAAGGATATATTAGTATTTGCTTTTCTTTTCTTT 338
consensus_6421#1      GCCTTGATCATCGAGAAAGGCATACATAAGGATATATTAGTATTTGCCTTCCTTTTCTTT 412
                      ************************* ********************* ** *********

consensus_6421#0      TAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTAC-AC-CCCTG 834
consensus_6421#2      TAATGTGGAATTCTATTATTGTACATTTTAGAGAGCATCCTACCTACCTAC-AC-CCCTG 396
consensus_6421#1      TAATGTGGAATTCTATTATTGTACATTTTAGAGCGCATCATACCTACCTACTACACCCTG 472
                      ********************************* ***** *********** ** *****

consensus_6421#0      -----TGTATTGTGTCAAAAAA-CCGTTCGCGGACGATTAA-TATTAAAA--TGTAAAAT 885
consensus_6421#2      G----TGTATTGTGTCAAAAAA-CCGTTCGCGGACGATTAAGTATTNAAAAGTGTAAAAT 451
consensus_6421#1      TACCCTGTATTGTGTCAAAAAAACTGCTCGCGGACGATTAA-TATTAAAA--TGTAAAAT 529
                           ***************** * * ************** **** ***  ********

consensus_6421#0      GTA------------------------------------------------- 888
consensus_6421#2      GTATGCCCCGTGAGGGAGGGCAGGATTGTTCTCACGCGCGCGCGGCT----- 498
consensus_6421#1      GTGTGCCCCGCGCGG-AGGGCAGGATTGTTCTCACGCACGCGCGGCTTTTTA 580
                      **                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)