These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 861 fasta sequence [CGTGTTTAAAGCAACATANAGAAAAAAGGAAAACTTCGACTGTGAAATGATTCCAACAGCAAGCACGGCATATTTTAACAATAAGAGAAAACACAACGGAAAAAAAACGCATAAACCCCCAACAGTCATAAACGCTATTGCTGAAACACTGTAACGAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAAAGAAAAGAAAGGAGGAGTGAAGTAATCATAGAAAAAACGAATAAAAACCTATTAACTAGAATTATACAAAAAAAACTAAATCGTTAAAAAGAAAAACAAATACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAATTAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATGAAATACAAACTTATATCAAGCAGTAAACAGAGGAAGTGGAAAACACTATTCGTGAAAAGTATTGCGGGGTTGTTATCAATTTTAAAATAAAAAATAAAACAAAACAAACATATACCATAGCTAGAGAAAAGAAATAAAAACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACNAAAGCAAATCGGAGAGAAGCAGCAGGTATTGTTGTTTCAAAATAGCTATCAACCGTAGAGCAATGAAAGAGCGAAAAAAACAAGAATGAAATAATCAACGTAACTGTGGATAGAAATTATGGAACGATTCGAAACAAAATGGCAAACAAAATCAAATCAAAATCAACGTGCGTGATCGTGGTAGGACGAACAGTTGAACACA] [+] EMBL BX626807 [CGTGTTTAAAGCAACATANAGAAAAAAGGAAAACTTCGACTGTGAAATGATTCCAACAGCAAGCACGGCATATTTTAACAATAAGAGAAAACACAACGGAAAAAAAACGCATAAACCCCCAACAGTCATAAACGCTATTGCTGAAACACTGTAACGAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAAAGAAAAGAAAGGAGGAGTGAAGTAATCATAGAAAAAACGAATAAAAACCTATTAACTAGAATTATACAAAAAAAACTAAATCGTTAAAAAGAAAAACAAATACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAATTAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATGAAATACAAACTTATATCAAGCAGTAAACAGAGGAAGTGGAAAACACTATTCGTGAAAAGTATTGCGGGGTTGTTATCAATTTTAAAATAAAAAATAAAACAAAACAAACATATACCATAGCTAGAGAAAAGAAATAAAAACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACNAAAGCAAATCGGAG ] [+] EMBL BM650032 [ ccgGAAAAATTCATGCAAATAGGAATTAATTACAAACTTATATCAAACAGTAAACAAAGGAAGTGGAAAACACTATTCGTGACAAGTATTGCGGAGTTGTTATCAATTTTAAAATAAAAAATAAAACAGAACAAACATATACCATAGCTAGAGAAAAGAAATAAAAACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACAAAAGCCAATCGGAGAGAAGCAGCAGGTATTGTTGTTTCAAAATAGCTATCAACCGTAGAGCAATGAAAGAGCGAAAAAAACAAGAATGAAATAATCAACGTAACTGTGGATAGAAATTATGGAACGATTCGAAACAAAATGGCAAACAAAATCAAATCAAAATCAACGTGCGTGATCGTGGTAGGACGAACAGTTGAACACA] consensusID : consensus_6424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 662 fasta sequence [ATCGCCCGAGGTTAAAGGTGAT-AACTAACTTGATGTAACAAAAAAAACCAGCAACAACAACAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAACTTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGCAACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAACGAAAGAAAANACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAACTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAACAAGAAAAGCAACAAACGANATAGCGAAGTGAACACACATTCATGCAACATAGGCAATTCAAATACACACACTTATAT-CAAGCAGTAAACAGACGCGAAGTGGCCNNAC-ACTCATCCCGTCGACCACGTATTGCGCGCGGTTCGTCATCAA] [+] EMBL AL931802 [ATCGCCCGAGGTTAAAGGTGAT AACTAACTTGATGTAACAAAAAAAACCAGCAACAACAACAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAACTTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGCAACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAACGAAAGAAAANACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAACTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAACAAGAAAAGCAACAAACGANATAGCGAAGTGAACACACATTCATGCAACATAGGCAATTCAAATACACACACTTATAT CAAGCAGTAAACAGACGCGAAGTGGCCNNAC ACTCATCCCGTCGACCACGTATTGCGCGCGGTTCGTCATCAA] [+] EMBL BX623311 [ AAAGGTGATAAACTAACTTGATGTAACAAAAAAAACCAGCAACAACAACAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAACTTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGCAACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAACGAAAGAAAAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAACTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAAAAAGAAAAGCAACAAACGA ATAG GAAGTG ANACATTCATGCAA ATAGG AATT AAATAC CAAACTTATATCCAAGCAGTAAACAGA G GAAGTGGGAAAACAACT AT TCGT GA CANGTATTGCGgg ] consensusID : consensus_6424#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [GAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAGGATAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAAACTAAATCGTTAAAAAGAAAAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATTAATTACAAACTTATATCAAGCAGTAAACAAAGGAAGTGGAAAACACTATTCGTGACAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGGGGGGC] [+] EMBL CNS08K8C [GAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAGGATAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAAACTAAATCGTTAAAAAGAAAAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATTAATTACAAACTTATATCAAGCAGTAAACAAAGGAAGTGGAAAACACTATTCGTGACAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGGGGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6424#1 ATCGCCCGAGGTTAAAGGTGATAACTAACTTGATGTAACAAAAAAAACCAGCAACAACAA 60 consensus_6424#2 ------------------------------------------------------------ consensus_6424#0 ------------------------------------------------------------ consensus_6424#1 CAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAAC 120 consensus_6424#2 ------------------------------------------------------------ consensus_6424#0 -------------------------CGTGTTTAAAGCAACATANAGAAAAAAGGAAAA-C 34 consensus_6424#1 TTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGC 180 consensus_6424#2 ------------------------------------------------------------ consensus_6424#0 TTCGACTGTGAAATGATTCCAACAGCAAGCACGGCATATTTTAACAATAAGAGAAAACAC 94 consensus_6424#1 AACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAA 240 consensus_6424#2 ------------------------------------------------------------ consensus_6424#0 AACGGAAAAAAAACGCATAAACCCCCAACAGTCATAAACGCTATTGCTGAAACACTGTAA 154 consensus_6424#1 CGAAAGAAAANACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGT 300 consensus_6424#2 --GAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAGGATAAGTGT 58 consensus_6424#0 CGAAA-AAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAAAGAAAAGAAAGGAGGAGTGA 213 ** ** * **************************** ********** ** **** consensus_6424#1 AGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAA 360 consensus_6424#2 AGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAA 118 consensus_6424#0 AGTAATCATAGAAAAAA--CGAATAAAAACCTATTAACTAGAATTATACAAAAAAAA--- 268 ***************** ***** ***************************** ** consensus_6424#1 AAAA-CTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAAT 419 consensus_6424#2 AAAAACTAAATCGTTAAAAAGAAAAACAAACACTAGAAATCGAAAACAGAAACTAGAAAT 178 consensus_6424#0 -----CTAAATCGTTAAAAAGAAAAACAAATACTAGAAATCGAAAACAGAAACTAGAAAT 323 ****************** ****** ***************************** consensus_6424#1 TGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAAT 479 consensus_6424#2 TGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAAT 238 consensus_6424#0 TGATGTTGATGAA-TTAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAAT 382 ************* * ******************************************** consensus_6424#1 GTGTTTTCGAAACAAACAAACAAACAAACAAACAA-------GAAAAGCAACAAACGANA 532 consensus_6424#2 GTGTTTTCGAAACAAACAAACAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAA- 297 consensus_6424#0 GTGTTTTCGAAACAAACAAACAAACAAAAA------------GAAAAGCAACAAACGAA- 429 **************************** * **************** consensus_6424#1 TAGCGAAGTGAACACACATTCATGCAACATAGGCAATTCAAATACACACACTTATATCAA 592 consensus_6424#2 TAG-GAAGTGAAAA---ATTCATGCAA-ATAGG-AATT--AAT-TACAAACTTATATCAA 348 consensus_6424#0 TAG-GAAGTGAAAA---ATTCATGCAA-ATAGG--AATGAAAT--ACAAACTTATATCAA 480 *** ******** * ********** ***** * * *** *** *********** consensus_6424#1 GCAGTAAACAGACGCGAAGTGGCCNNACACTCATCCCGTCGACCACGTA-TTGCGCGCG- 650 consensus_6424#2 GCAGTAAACAAAGGAAGTGGAAAACACTATTCGTGACAAAAAAAAAAAA-GGCCACATGT 407 consensus_6424#0 GCAGTAAACAGAGGAAGTGGAAAACACTATTCGTGAAAAGTATTGCGGGGTTGTTATCAA 540 ********** * * * * ** * * consensus_6424#1 GTTCGTCATCAA------------------------------------------------ 662 consensus_6424#2 GCTCGAGCTGGGGGGC-------------------------------------------- 423 consensus_6424#0 TTTTAAAATAAAAAATAAAACAAAACAAACATATACCATAGCTAGAGAAAAGAAATAAAA 600 * * consensus_6424#1 ------------------------------------------------------------ consensus_6424#2 ------------------------------------------------------------ consensus_6424#0 ACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACNA 660 consensus_6424#1 ------------------------------------------------------------ consensus_6424#2 ------------------------------------------------------------ consensus_6424#0 AAGCAAATCGGAGAGAAGCAGCAGGTATTGTTGTTTCAAAATAGCTATCAACCGTAGAGC 720 consensus_6424#1 ------------------------------------------------------------ consensus_6424#2 ------------------------------------------------------------ consensus_6424#0 AATGAAAGAGCGAAAAAAACAAGAATGAAATAATCAACGTAACTGTGGATAGAAATTATG 780 consensus_6424#1 ------------------------------------------------------------ consensus_6424#2 ------------------------------------------------------------ consensus_6424#0 GAACGATTCGAAACAAAATGGCAAACAAAATCAAATCAAAATCAACGTGCGTGATCGTGG 840 consensus_6424#1 --------------------- consensus_6424#2 --------------------- consensus_6424#0 TAGGACGAACAGTTGAACACA 861 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||