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Anopheles gambiae
cluster # 6425 cluster # 6425       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6425#0 length = 680 sequences # 2  
consensus_6425#1 length = 446 sequences # 1  
consensus_6425#2 length = 424 sequences # 1  
consensus_6425#3 length = 293 sequences # 1  

consensusID : consensus_6425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 680
fasta sequence
                              [AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGGTGGCTACTTCATCGAGTGCAA-CACCGNAACCGAGGTGTTTACATACGTTCTGCGNAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCATCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGCCCTG-CCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGCGCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTGTATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATCACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA]

[+] EMBL BX466373             [AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGGTGGCTACTTCATCGAGTGCAA CACCGNAACCGAGGTGTTTACATACGTTCTGCGNAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCATCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGCCCTG CCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGCGCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTGTATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATCACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA]
[+] EMBL BX622236             [                                                                                      cCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTG  GGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCC GTGGCTACTTCATCGA TGCAACCACCGTAACCGA GTGTTTACATACGTTCTGC AAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA AATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC GAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAAGGATATGCCGCAGGTGCACGACAGCGAC GATAA GGCGAACGA GCAGGCGCACCAGGAAGCGGACTACCACC GGCAGGA CGAGCAGGTTAACGTGTGCCTCG AGTGTATTAGCGACAAGCTGCGCAACCTGAAGCGACGGTNCATCCGGTGTA GTTCGC AGATCACGATCACGCA                        ]


>consensus_6425#0 AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAA AAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCA TCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAA ACACTGAACGAACACATCACCTGCGAGATTTGCCGGTGGCTACTTCATCGAGTGCAACAC CGNAACCGAGGTGTTTACATACGTTCTGCGNAAAGCTGCCTTGTGAAGCATTTAGAGGAA AACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCATCCGGTGNAGTACAT CAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGGAACCTCATGGACA ATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGCCCTGCCGAAGGATAT GCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGCGCACCAGGAAGCGGA CTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTGTATTAGCGACAAGCT GCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATCACGATCACGCAGCCT AANGAAGGTTCCGTCTGCGA



consensusID : consensus_6425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence
                              [CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGTAACCGAGTGTTTACATACGTTCTGCAAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAA]

[+] EMBL BM642014             [CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGTAACCGAGTGTTTACATACGTTCTGCAAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAA]


>consensus_6425#1 CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTC GCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCG CCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGC GAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGTAACCGAGTGTTTACATACGTTC TGCAAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAAT GTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATC GTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTAC AAATCGCGCAACCTGCCCTGCCCGAA



consensusID : consensus_6425#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGGTAACCCGACGTGTTCTACATACGTTCTGCAAAAGCTGCCTTGCTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCA]

[+] EMBL AL696827             [TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGGTAACCCGACGTGTTCTACATACGTTCTGCAAAAGCTGCCTTGCTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCA]


>consensus_6425#2 TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAAAAAG GGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCAT CCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTG AACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGGTAAC CCGACGTGTTCTACATACGTTCTGCAAAAGCTGCCTTGCTGAAGCATTTAGAGGAAAACA ATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCT TCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGA TGCA



consensusID : consensus_6425#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [GAGGCAGAATCGCCACGAGGTGTAAGCACATAGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGAAAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGATGCGAAGCCACACGGGNAACCGAGGTGTTACAGTACGGTTACTGGCAANAAGGCNTGCCGTANGTGAAAAGCATTAAGA]

[+] EMBL BX466255             [GAGGCAGAATCGCCACGAGGTGTAAGCACATAGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGAAAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGATGCGAAGCCACACGGGNAACCGAGGTGTTACAGTACGGTTACTGGCAANAAGGCNTGCCGTANGTGAAAAGCATTAAGA]


>consensus_6425#3 GAGGCAGAATCGCCACGAGGTGTAAGCACATAGATAAAAAAGGGCAGTTTTCTAAAAGTC GCGACCAACAAATTCGTGCGATCGTGGTAAAACAGCATCATCCCTGGGCTTGCCCGGCGC CTGTCCCGANCATGGAAAAGACGGANTAAAGTTGAAAACACTGAAGCGAACACAGTCANC TGCGAGATATTGCTCCGTGGCTACGATTCATCGATGCGAAGCCACACGGGNAACCGAGGT GTTACAGTACGGTTACTGGCAANAAGGCNTGCCGTANGTGAAAAGCATTAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6425#0      AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAA 60
consensus_6425#1      ----------------------CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAA 38
consensus_6425#2      ----TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAA 56
consensus_6425#3      -------------------GAGGCAGAATCGCCACGAGGTGTAAGCAC--ATAGAT-AAA 38
                                                              * *****   ***    ***

consensus_6425#0      AAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCA 120
consensus_6425#1      AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCA 98
consensus_6425#2      AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCA 116
consensus_6425#3      AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAA-CAGCA 97
                      ************************** *************************** *****

consensus_6425#0      TCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 178
consensus_6425#1      TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 154
consensus_6425#2      TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 172
consensus_6425#3      TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGA 155
                      **********  ********************** ******** ******  ********

consensus_6425#0      AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CGGTGGCTAC--TTCATCGAG 232
consensus_6425#1      AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CG-TGGCTAC--TTCATCGA- 206
consensus_6425#2      AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CG-TGGCTAC--TTCATCGA- 224
consensus_6425#3      AAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGAT 215
                      ********** ******** *** ********* **** *  *******  ******** 

consensus_6425#0      -TGCAAC-AC-CGNAA--CCGAGGTGTT-TACATACGTTCTGCGNAAAGCTGCCTTG-TG 285
consensus_6425#1      -TGCAACCAC-CGTAA--CCGAG-TGTT-TACATACGTTCTGC-AAAAGCTGCCTTG-TG 258
consensus_6425#2      -TGCAACCAC-CGGTAACCCGACGTGTTCTACATACGTTCTGC-AAAAGCTGCCTTGCTG 281
consensus_6425#3      GCGAAGCCACACGGGNAACCGAGGTGTTACA-GTACGGTTACTGGCAANAAGGCNTG--- 271
                        * * * ** **     ****  ****  *  **** *       **   * * **   

consensus_6425#0      AAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCA 345
consensus_6425#1      AAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA-AATGTTATCCACCAGTCCCA 317
consensus_6425#2      AAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA-AATGTTATCCACCAGTCCCA 340
consensus_6425#3      CCGTANGTGAAAAGCATTAAGA-------------------------------------- 293
                        * *  *  *    *  ** *                                      

consensus_6425#0      TCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 405
consensus_6425#1      TCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 377
consensus_6425#2      TCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 400
consensus_6425#3      ------------------------------------------------------------
                                                                                  

consensus_6425#0      GGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGC 465
consensus_6425#1      G-AACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGC 436
consensus_6425#2      G-AACCTCATGGACAATGAGATGCA----------------------------------- 424
consensus_6425#3      ------------------------------------------------------------
                                                                                  

consensus_6425#0      CCTGCCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGC 525
consensus_6425#1      CCTGCCCGAA-------------------------------------------------- 446
consensus_6425#2      ------------------------------------------------------------
consensus_6425#3      ------------------------------------------------------------
                                                                                  

consensus_6425#0      GCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTG 585
consensus_6425#1      ------------------------------------------------------------
consensus_6425#2      ------------------------------------------------------------
consensus_6425#3      ------------------------------------------------------------
                                                                                  

consensus_6425#0      TATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATC 645
consensus_6425#1      ------------------------------------------------------------
consensus_6425#2      ------------------------------------------------------------
consensus_6425#3      ------------------------------------------------------------
                                                                                  

consensus_6425#0      ACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA 680
consensus_6425#1      -----------------------------------
consensus_6425#2      -----------------------------------
consensus_6425#3      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)