These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence [AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGGTGGCTACTTCATCGAGTGCAA-CACCGNAACCGAGGTGTTTACATACGTTCTGCGNAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCATCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGCCCTG-CCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGCGCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTGTATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATCACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA] [+] EMBL BX466373 [AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGGTGGCTACTTCATCGAGTGCAA CACCGNAACCGAGGTGTTTACATACGTTCTGCGNAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCATCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGCCCTG CCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGCGCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTGTATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATCACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA] [+] EMBL BX622236 [ cCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTG GGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCC GTGGCTACTTCATCGA TGCAACCACCGTAACCGA GTGTTTACATACGTTCTGC AAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA AATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC GAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAAGGATATGCCGCAGGTGCACGACAGCGAC GATAA GGCGAACGA GCAGGCGCACCAGGAAGCGGACTACCACC GGCAGGA CGAGCAGGTTAACGTGTGCCTCG AGTGTATTAGCGACAAGCTGCGCAACCTGAAGCGACGGTNCATCCGGTGTA GTTCGC AGATCACGATCACGCA ] consensusID : consensus_6425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGTAACCGAGTGTTTACATACGTTCTGCAAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAA] [+] EMBL BM642014 [CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGTAACCGAGTGTTTACATACGTTCTGCAAAAGCTGCCTTGTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGCCCTGCCCGAA] consensusID : consensus_6425#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGGTAACCCGACGTGTTCTACATACGTTCTGCAAAAGCTGCCTTGCTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCA] [+] EMBL AL696827 [TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGACCATGGAAAGACGGATAAAGTTGAAAACACTGAACGAACACATCACCTGCGAGATTTGCCGTGGCTACTTCATCGATGCAACCACCGGTAACCCGACGTGTTCTACATACGTTCTGCAAAAGCTGCCTTGCTGAAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAAAATGTTATCCACCAGTCCCATCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCCGAACCTCATGGACAATGAGATGCA] consensusID : consensus_6425#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [GAGGCAGAATCGCCACGAGGTGTAAGCACATAGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGAAAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGATGCGAAGCCACACGGGNAACCGAGGTGTTACAGTACGGTTACTGGCAANAAGGCNTGCCGTANGTGAAAAGCATTAAGA] [+] EMBL BX466255 [GAGGCAGAATCGCCACGAGGTGTAAGCACATAGATAAAAAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAACAGCATCATCCCTGGGCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGAAAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGATGCGAAGCCACACGGGNAACCGAGGTGTTACAGTACGGTTACTGGCAANAAGGCNTGCCGTANGTGAAAAGCATTAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6425#0 AGCAGATCGGCACAGGAGATTATAGGAGAGAGAAAGGAAAGAAAGCACCAATAGATAAAA 60 consensus_6425#1 ----------------------CCGCCCACGCGTCCGAAAGAAAGCAACAATAGATAAAA 38 consensus_6425#2 ----TGCTCGAGGCAGAATCGCCAGAGGTTAAAAAGGAAAGAAAGCAACAATACGATAAA 56 consensus_6425#3 -------------------GAGGCAGAATCGCCACGAGGTGTAAGCAC--ATAGAT-AAA 38 * ***** *** *** consensus_6425#0 AAAGGGCAGTTTTCTAAAAGTCGCGAACAACAAATTCGTGCGATCGTGGTAAAAACAGCA 120 consensus_6425#1 AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCA 98 consensus_6425#2 AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAAACAGCA 116 consensus_6425#3 AAAGGGCAGTTTTCTAAAAGTCGCGACCAACAAATTCGTGCGATCGTGGTAAAA-CAGCA 97 ************************** *************************** ***** consensus_6425#0 TCATCCCTGGTGGCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 178 consensus_6425#1 TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 154 consensus_6425#2 TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGACCATGGAAA-GACGGAT-AAAGTTGA 172 consensus_6425#3 TCATCCCTGG--GCTTGCCCGGCGCCTGTCCCGANCATGGAAAAGACGGANTAAAGTTGA 155 ********** ********************** ******** ****** ******** consensus_6425#0 AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CGGTGGCTAC--TTCATCGAG 232 consensus_6425#1 AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CG-TGGCTAC--TTCATCGA- 206 consensus_6425#2 AAACACTGAA-CGAACACA-TCACCTGCGAGAT-TTGC-CG-TGGCTAC--TTCATCGA- 224 consensus_6425#3 AAACACTGAAGCGAACACAGTCANCTGCGAGATATTGCTCCGTGGCTACGATTCATCGAT 215 ********** ******** *** ********* **** * ******* ******** consensus_6425#0 -TGCAAC-AC-CGNAA--CCGAGGTGTT-TACATACGTTCTGCGNAAAGCTGCCTTG-TG 285 consensus_6425#1 -TGCAACCAC-CGTAA--CCGAG-TGTT-TACATACGTTCTGC-AAAAGCTGCCTTG-TG 258 consensus_6425#2 -TGCAACCAC-CGGTAACCCGACGTGTTCTACATACGTTCTGC-AAAAGCTGCCTTGCTG 281 consensus_6425#3 GCGAAGCCACACGGGNAACCGAGGTGTTACA-GTACGGTTACTGGCAANAAGGCNTG--- 271 * * * ** ** **** **** * **** * ** * * ** consensus_6425#0 AAGCATTTAGAGGAAAACAATACCTGGCCAACGTGTGAACAATGTTATCCACCAGTCCCA 345 consensus_6425#1 AAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA-AATGTTATCCACCAGTCCCA 317 consensus_6425#2 AAGCATTTAGAGGAAAACAATACCTGCCCAACGTGTGAA-AATGTTATCCACCAGTCCCA 340 consensus_6425#3 CCGTANGTGAAAAGCATTAAGA-------------------------------------- 293 * * * * * ** * consensus_6425#0 TCCGGTGNAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 405 consensus_6425#1 TCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 377 consensus_6425#2 TCCGCTGCAGTACATCAGCTTCGACCGGACGATGCAGGACATCGTGTACAAGCTGGTGCC 400 consensus_6425#3 ------------------------------------------------------------ consensus_6425#0 GGAACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAANCTGC 465 consensus_6425#1 G-AACCTCATGGACAATGAGATGCAGCGGGAGCGCGAGTTTTACAAATCGCGCAACCTGC 436 consensus_6425#2 G-AACCTCATGGACAATGAGATGCA----------------------------------- 424 consensus_6425#3 ------------------------------------------------------------ consensus_6425#0 CCTGCCGAAGGATATGCCGCAGGTGCACGACAGCGACGGATAAGGGCGAACGAGGCAGGC 525 consensus_6425#1 CCTGCCCGAA-------------------------------------------------- 446 consensus_6425#2 ------------------------------------------------------------ consensus_6425#3 ------------------------------------------------------------ consensus_6425#0 GCACCAGGAAGCGGACTACCACCGGGCAGGACCGAGCAGGTTAACGTGTGCCTCGCAGTG 585 consensus_6425#1 ------------------------------------------------------------ consensus_6425#2 ------------------------------------------------------------ consensus_6425#3 ------------------------------------------------------------ consensus_6425#0 TATTAGCGACAAGCTGCGCAAACTGAAGCGACGGTTCATCCGGTGTAGGTTCGCGAGATC 645 consensus_6425#1 ------------------------------------------------------------ consensus_6425#2 ------------------------------------------------------------ consensus_6425#3 ------------------------------------------------------------ consensus_6425#0 ACGATCACGCAGCCTAANGAAGGTTCCGTCTGCGA 680 consensus_6425#1 ----------------------------------- consensus_6425#2 ----------------------------------- consensus_6425#3 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||