These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 809 fasta sequence [CCGCTCAAATGGTTGATTAAACTTTAAAAGTCACGTCGTCGCCGAACCTGGCTGGTTCGTTACATTCGCATTTCCATTTCTTTGGCTTCTACAGGGTATTTGTAACGACGGAAGAGGAGGAGGAGGAGAAGGAAGCAGAATAGAGCGAAAGAAGAATAAACAAAACATTGTAAACCAATAGACAAGTAAAGCCTAGAATAGTGTGCAAATGTGTAACGAACAAAAACAAGAAGCGGAAAGCGAGCGCAAAGAATAGGTAAAAAAAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTTGTGTTTTCCTCTTTCTCTTTCCTTTGTTTTATTCCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGG-AGTGAGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTTGTTCATGTGTGTTTGTGAGTGTGTAAGAGAGGTTAATCTCAGCATAGGAAGTGATCGAGGAGCTTTCTCTCTTAGTATGACTGATTCGACATTAGTAGCAAGGAAATGAGTGTG-AGGATGCGTGCGTGGTTTTAGCAACGAGAAGGACGAAAGTGTGCGATCGTATCGTGGGCATGTGTTACAATGATTGTGGTGTGTCTGTGGGTTTTAAACGAGAATGGGAGGGTTGAGTAACGACCATGCGAAGTCCGAAAGGATGCGGAACGGAATANGAATATTANGTCTT] [+] EMBL BM642289 [CCGCTCAAATGGTTGATTAAACTTTAAAAGTCACGTCGTCGCCGAACCTGGCTGGTTCGTTACATTCGCATTTCCATTTCTTTGGCTTCTACAGGGTATTTGTAACGACGGAAGAGGAGGAGGAGGAGAAGGAAGCAGAATAGAGCGAAAGAAGAATAAACAAAACATTGTAAACCAATAGACAAGTAAAGCCTAGAATAGTGTGCAAATGTGTAACGAACAAAAACAAGAAGCGGAAAGCGAGCGCAAAGAATAGGTAAAAAAAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTTGTGTTTTCCTCTTTCTCTTTCCTTTGTTTTATTCCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGG A AGTGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTTGTTCATGTGTGTTTGTGAGTGTGTAAGAGAGGTGAATCTCAGCATAGAAAGTGATCGAGGAGCTTTCTCTCTTAGTACGACTGATTCGACATTAGTAGCAAGGAAATGAGTGTG AGGATGCGTGCGTGGTTTTAGCAACGAGAAGGACGAAA ] [+] EMBL BX627379 [ GAGCGCAAAGAATAGGT AAAAAAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTTGTGTTTTCCACTTTCTCTTTCCTTTGTTTTATTCCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGGAAGTGAGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTTGTTCATGTGTGTTTGTGAGTGTGTAAGAGAGGTTAATCTCAGCATAGGAAGTGATCGAGGAGCTTTCTCTCTTAGTATGACTGATTCGACATTAGTAGCAAGGAAATGAGTGTG AGGATGCGTGCGTGGTTTTAGCAACGAGAAGGACGAAAGTGTGCGATCGTATCGTGGGCATGTGTTACAATGATTGTGGTGTGTCTGTGGGTTTTAAACGAGAATGGGAGGGTTGAGTAACGACCATGCGAAGTCCGAAAGGATGCGGAACGGAATANGAATATTANGTCTT] [+] EMBL BX619902 [ TGAGGTATGTNN AGTGAGAGAGAGAGTCTTATCCGCTTATC AACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTTGTTCATGTGTGTTTGTGAGTGTGTAAGAGAGGTTAATCTCAGCATAGGAAGTGATCGAGGAGCTTTCTCTCTTAGTATGACTGATTCGACATTAGTAGCAAGG NNTGAGTGTGTAGGATG ] consensusID : consensus_6428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [CCCCCGNGGTTAAAGGCAAAACAAGAAGCGGACAAGCGAGCGCAAAGAATAGGTAAAAACAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTCTGTGTTTTCCACTTATCTCTTTCCTATATGTATTCATTACCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGAAAGTGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTATATGTTCATGTGTGTTTGTGAGTGTGTAAGCAGAGGTTAATCACAGCATAGGAAGTGATCGAGGAGCTTATCTCTCTTCANNNTGCACTGATTACGACCATTCAATAGCAACGGCAACNTCGACTGTGAGGATGCGTGCCGCTGGTCTACAAGCCNACGCAAGAAGGACCGAAAGTGTGCGATCCGTCATCNCGAGCACTGCTGTCACANATTGACTACAGGNGGGCTGGNNGGTACTAGGNCAGCGGCTACACAAAAAAACCGCACACAANTGGNGCACACGGGTCTCGAGTCAAACCGCAACCCANTGGCCCGACACGTCCCCGCACAACGGCTGCCCCAAACCNGCACACCTNACGGGACATCATCACGGTCCTCCAATACCACCGCCANNCCNAANTNG] [+] EMBL AL694830 [CCCCCGNGGTTAAAGGCAAAACAAGAAGCGGACAAGCGAGCGCAAAGAATAGGTAAAAACAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTCTGTGTTTTCCACTTATCTCTTTCCTATATGTATTCATTACCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGAAAGTGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTATATGTTCATGTGTGTTTGTGAGTGTGTAAGCAGAGGTTAATCACAGCATAGGAAGTGATCGAGGAGCTTATCTCTCTTCANNNTGCACTGATTACGACCATTCAATAGCAACGGCAACNTCGACTGTGAGGATGCGTGCCGCTGGTCTACAAGCCNACGCAAGAAGGACCGAAAGTGTGCGATCCGTCATCNCGAGCACTGCTGTCACANATTGACTACAGGNGGGCTGGNNGGTACTAGGNCAGCGGCTACACAAAAAAACCGCACACAANTGGNGCACACGGGTCTCGAGTCAAACCGCAACCCANTGGCCCGACACGTCCCCGCACAACGGCTGCCCCAAACCNGCACACCTNACGGGACATCATCACGGTCCTCCAATACCACCGCCANNCCNAANTNG] consensusID : consensus_6428#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [GCGGAAAGCGAGCGCAAAGACTAGGTAAAAAAATGTAGAACTCAGCAAAACTAAACGGGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACACTAAAACAGTACATAAGAGCAGAAAAGTGTCGTAGTGGTGAGTATCTCTGTGTAGCCCTCTCACTCTCACCTGAGTGGCATCCCGGGACATGGCATATCGTCATTAGA] [+] EMBL BX613274 [GCGGAAAGCGAGCGCAAAGACTAGGTAAAAAAATGTAGAACTCAGCAAAACTAAACGGGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACACTAAAACAGTACATAAGAGCAGAAAAGTGTCGTAGTGGTGAGTATCTCTGTGTAGCCCTCTCACTCTCACCTGAGTGGCATCCCGGGACATGGCATATCGTCATTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6428#1 ------------------------------------------------------------ consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 CCGCTCAAATGGTTGATTAAACTTTAAAAGTCACGTCGTCGCCGAACCTGGCTGGTTCGT 60 consensus_6428#1 ------------------------------------------------------------ consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 TACATTCGCATTTCCATTTCTTTGGCTTCTACAGGGTATTTGTAACGACGGAAGAGGAGG 120 consensus_6428#1 ------------------------------------------------------------ consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 AGGAGGAGAAGGAAGCAGAATAGAGCGAAAGAAGAATAAACAAAACATTGTAAACCAATA 180 consensus_6428#1 -------------------------CCCCCGNGGTTAAAGGCAAAACAAGAAGCGGACAA 35 consensus_6428#2 ----------------------------------------------------GCGGA-AA 7 consensus_6428#0 GACAAGTAAAGCCTAGAATAGTGTGCAAATGTGTAACGAACAAAAACAAGAAGCGGA-AA 239 ***** ** consensus_6428#1 GCGAGCGCAAAGAATAGGTAAAAACAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAG 95 consensus_6428#2 GCGAGCGCAAAGACTAGGTAAAAAAA--TGTAGAACTCAGCAAAACTAAACGGGTAAAAG 65 consensus_6428#0 GCGAGCGCAAAGAATAGGTAAAAAAAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAG 299 ************* ********** * ************************ ******* consensus_6428#1 GAGACAAGCGAACAAAACAGCACACACACAC--TAAAACAGTACATTAGAGCAGAAAAGT 153 consensus_6428#2 GAGACAAGCGAACAAAACAGCACACACACACACTAAAACAGTACATAAGAGCAGAAAAGT 125 consensus_6428#0 GAGACAAGCGAACAAAACAGCACACACACAC--TAAAACAGTACATTAGAGCAGAAAAGT 357 ******************************* ************* ************* consensus_6428#1 GTTGTAGTTGTGAGTATCTTCTGTGTTTTCCACTTATCTCTTTCCTATATGTATTCATTA 213 consensus_6428#2 GTCGTAGTGGTGAGTATCT-CTGTGTAGCCCTCTCA-CTCTCACCTGAGTGGCATC---- 179 consensus_6428#0 GTTGTAGTTGTGAGTATCT-TTGTGTTTTCCTCTTT-CTCTTTCCTTTGTTTTATT---- 411 ** ***** ********** ***** ** ** **** *** * * consensus_6428#1 CCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGAAA-GTGAGAGAGAG 272 consensus_6428#2 CCGGGACATGGCATATCGTCATTAGA---------------------------------- 205 consensus_6428#0 CCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGGAGTGAGAGAGAGAG 471 *** ***** **************** consensus_6428#1 TCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTATATGTTCAT 332 consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 TCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTT--GTTCAT 529 consensus_6428#1 GTGTGTTTGTGAGTGTGTAAGCAGAGGTTAATCACAGCATAGGAAGTGATCGAGGAGCTT 392 consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 GTGTGTTTGTGAGTGTGTAAG-AGAGGTTAATCTCAGCATAGGAAGTGATCGAGGAGCTT 588 consensus_6428#1 ATCTCTCTTCANNNTGCACTGATTACGACCATTCAATAGCAACGGCAACNTCGACTGTGA 452 consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 -TCTCTCTT-AGTATG-ACTGATT-CGACA--TTAGTAGCAAGGA----AATGAGTGTGA 638 consensus_6428#1 GGATGCGTGCCGCTGGTCTACAAGCCNACGCAAGAAGGACCGAAAGTGTGCGATCCGTCA 512 consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 GGATGCGTGC--GTGGTTTT---AGCAACG--AGAAGGAC-GAAAGTGTGCGATC--GTA 688 consensus_6428#1 TCNCGAGCACTGCTGTCACANATTGACTACAGGNGGGCTGGNNGGTACTAGGNCAG--CG 570 consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 TCGTGGGCA----TGTGTTACAATGATTGT-GGTGTGTCTGTGGGTTTTAAACGAGAATG 743 consensus_6428#1 GCTACACAAAAAAACCGCACACAANTGGNGCACACGGGTCTCGAGTCAAACCGCAACCCA 630 consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 GGAGGGTTGAGTAACGAC-CATGCGAAGTCCGAAAGGATGCGGAACGGAATANGAATATT 802 consensus_6428#1 NTGGCCCGACACGTCCCCGCACAACGGCTGCCCCAAACCNGCACACCTNACGGGACATCA 690 consensus_6428#2 ------------------------------------------------------------ consensus_6428#0 ANGTCTT----------------------------------------------------- 809 consensus_6428#1 TCACGGTCCTCCAATACCACCGCCANNCCNAANTNG 726 consensus_6428#2 ------------------------------------ consensus_6428#0 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||