These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 749 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCGCTGCCATG-ACCAGGAG-AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTACTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA] [+] EMBL BM590988 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCGCTGCCATGAACCAGGAGCAAGTTCGTTGATC ] [+] EMBL BM654031 [ ccgGGAGTAACTTACCGGTTGCGTACCGTGTGTGAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGGTGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATATGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGCGGCTGTGTCCATCAGTTGGAAGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAGGAAGGATCCG ] [+] EMBL BX608229 [ GTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATACGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGAGGCTGTGTCCATCAGTTGGAGGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTGCTGCAGGAAGGATCCGCTGCCATG ACCAGGAG AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTACTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA] [+] EMBL BX628857 [ TGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATACGGCCTCGATTGTGACTTCTGTTACGGCGATGAAGATTGTTCGCTGGGATTGGAGGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTTCATCCGACCGCTGAGCACTGCGCTGCCCACGAAACATAATCACTATGAGTGCATCCACGTGCGTGCTACATCTGTGAGTGGCCACGTGTTCCTGTTTACCCGAGGCTGTGTCCATCAGTTGGAGGGAGGAAGACACTTTTGCTCCCTACCACATGCTGCGTTTCAGGGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTGCTGCAGGAAGGATCCGCTGCCATG ACCAGGAG AAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTAC ] consensusID : consensus_6429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [GAATCCCCGAGGTTCGCGGAGTACTTACCGGTTGCGTACGTGTGTGAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAAACGCCGTCAGCCTGTACGACACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTACAAAAACAGGATACGGGCTCGATGTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTTCATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCCACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGTGTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC] [+] EMBL AL931800 [GAATCCCCGAGGTTCGCGGAGTACTTACCGGTTGCGTACGTGTGTGAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTGAAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGGTGTCCCAGGAGTGTCTTAAACGCCGTCAGCCTGTACGACACACAATGCGTTGCTACGCAACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTACAAAAACAGGATACGGGCTCGATGTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGTGCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTTCATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCCACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGTGTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6429#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCGGAGTAACTTACCGGTTGCGTACCGTGTGT 60 consensus_6429#1 ------------GAATCCCCGAG-GTTCGCGGAGTA-CTTACCGGTTGCGTAC-GTGTGT 45 * ** * * ********* **************** ****** consensus_6429#0 GAAGTCAATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTG 120 consensus_6429#1 GAAGTCCATGATTATACACAAATAATACAGGTGTGAAACGAGGTGAACGAATTTTCGTTG 105 ****** ***************************************************** consensus_6429#0 AAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGGTTAGTTCAAACGG 180 consensus_6429#1 AAGTTCACATTTGAACGATAACACGTGTAGATATCGCGGTGTAAAGTTTAATGCAAACGG 165 ********************************************** *** * ******* consensus_6429#0 TGTCCCAGAAGTGTCTTAGAACGCCGTCAGCCTGTACGACCACACAATGCGTTGCTACGC 240 consensus_6429#1 TGTCCCAGGAGTGTCTTA-AACGCCGTCAGCCTGTACGAC-ACACAATGCGTTGCTACGC 223 ******** ********* ********************* ******************* consensus_6429#0 AACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTAGCAAAAACAGGATA 300 consensus_6429#1 AACGATCACCGCGGTGGCTTCGGTAATAGTGGGACTTTTGGCTCTA-CAAAAACAGGATA 282 ********************************************** ************* consensus_6429#0 TGGCCTCGATTGTGACTTCTGTTACGGCGATGAA-GATTGTTCGC-TGGGATTGGAG-GT 357 consensus_6429#1 CGGGCTCGAT-GTGACTTCTGTTACGGCGATGAACGATTGTTCGCCTGGGATTGGACTGT 341 ** ****** *********************** ********** ********** ** consensus_6429#0 GCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGACCAACAGCAGTTTGGCCAGCTT 417 consensus_6429#1 GCCCGTGGTAGAGTGCGACGAGGAATCGGTTCAGCTGAACAACAGCAGTTTGGCCAGCTT 401 ************************************** ********************* consensus_6429#0 CATCCGACCGCTGAG-CACTGCGCTGCCCAC---GAAACATAATCACTATGAGTGCATCC 473 consensus_6429#1 CATCCGAACGCTGAGGCACTGTGCTGCCAACACTGAAACATAATCACTATGAGTGCCTCC 461 ******* ******* ***** ****** ** ********************** *** consensus_6429#0 ACG-TGC-GTGCTA-CATCT-GTGAG-TGGCCACG-TGTTCC-TGTTTACCCGCGGCTGT 526 consensus_6429#1 ACAATGCCNTGCTAACATCTTGTGAAATGGCCACNGTGTNCCCTGTTTAACCNAAGCTGT 521 ** *** ***** ***** **** ******* *** ** ****** ** ***** consensus_6429#0 GTCCATCAGTTGGAA-GGAGG-AAGACACTTTT-GCTCCCTACCACATGCTGCGTTTCAG 583 consensus_6429#1 GTCCATCACNTGGAGCGGAGGCAACACACTTATAGGTCCCCTCAACCCNATNCTTCCTCC 581 ******** **** ***** ** ****** * * **** * ** * * * consensus_6429#0 GGATCGCTCGAGTGCGTTGCCTGCGTTGGAGATCGATGCAACAACGTTCCCGTACTGCAG 643 consensus_6429#1 ------------------------------------------------------------ consensus_6429#0 GAAGGATCCGCTGCCATGACCAGGAGAAGTTCGTTGATCTCTCTCGCCGTCTGTTCGTTA 703 consensus_6429#1 ------------------------------------------------------------ consensus_6429#0 CTTGCAGTTTCGCTTTCCACATTAGCAGCACCGTACAGCTGATGGA 749 consensus_6429#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||