These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 756 fasta sequence [TGCTAATTCTACCCCCGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACCCAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAACAAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAACAAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGAAATACAACAGCCAGAAGCAG] [+] EMBL BX620425 [TGCTAATTCTACCCCCGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACCCAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAACAAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGTGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAATAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACAAATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAA AAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAA ] [+] EMBL BX624177 [ CTAATTCTACCCCAGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACACAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAACAAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAACAAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAG ] [+] EMBL BX614516 [ AACAAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAACAAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAA ] [+] EMBL BX610960 [ AACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAACAAAAAACATACAACAACACATACAATAAATC ACAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGAAATACAACAGCCAGAAGCAG] consensusID : consensus_6430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [TAGTATCGGCATTCGACCGCACTGAAGATGAGAGTTGTCGATAAGAGGATGGGGCAGTCGCGTTCGCTGAAAGGGAAGCTATTAAATCAAATTAAATCAATTTACCGCGCCCCGATCCATATAACGCGCACGGGATGGTCCCACACCACTGCGGTGGGGTGCTTTGACGGTGTTTTACAACCCCTCCATCCGTCGCACAGTAATGTGTGTGTGTGTGTGTGTTTGTGTTGTAGTAGTGTAATAGTAGTAGTAATAGTAGTAAAAAAAACAAAAAAAGGAAGAAGAAAAAAAACTCCACCGTGTGAGGCTAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGAAATACAACAGCAAGAAGCAGAAGAAGAAGGAAAAAACACGTGGAATTTAGGGCGCATTTATCTTTGTCGATAGCAAAAAAAAAAACGATACTTGTGCACACGAAAATGTCCGCGCGCGCGCTCAGCCTGTTGTAAAATCTATATGATTAGTCAAATAAAAACACTT] [+] EMBL BX608615 [TAGTATCGGCATTCGACCGCACTGAAGATGAGAGTTGTCGATAAGAGGATGGGGCAGTCGCGTTCGCTGAAAGGGAAGCTATTAAATCAAATTAAATCAATTTACCGCGCCCCGATCCATATAACGCGCACGGGATGGTCCCACACCACTGCGGTGGGGTGCTTTGACGGTGTTTTACAACCCCTCCATCCGTCGCACAGTAATGTGTGTGTGTGTGTGTGTTTGTGTTGTAGTAGTGTAATAGTAGTAGTAATAGTAGTAAAAAAAACAAAAAAAGGAAGAAGAAAAAAAACTCCACCGTGTGAGGCTAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGAAATACAACAGCAAGAAGCAGAAGAAGAAGGAAAAAACACGTGGAATTTAGGGCGCATTTATCTTTGTCGATAGCAAAAAAAAAAACGATACTTGTGCACACGAAAATGTCCGCGCGCGCGCTCAGCCTGTTGTAAAATCTATATGATTAGTCAAATAAAAACACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6430#0 TGCTAATTCTACCCCCGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACC 60 consensus_6430#1 ------------------------------------------------------------ consensus_6430#0 CAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAAC 120 consensus_6430#1 ------------------------------------------------------------ consensus_6430#0 AAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCA 180 consensus_6430#1 ----------------------------------------------------------TA 2 * consensus_6430#0 TAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGC 240 consensus_6430#1 GTATCGGCATTCGACCGCACTGAAGATGAGAG---TTGTCGATAAGA---GGATGGGGCA 56 * * *** * * ****** ** **** ** * * * * * * consensus_6430#0 GTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGG 300 consensus_6430#1 GTCGCGTTCGCTGAAAGGGAAGCTATTAAATCAAATTAAATCAAT-TTACCGCGCCCCGA 115 ** ** * ** * * ** **** ** * * * * * consensus_6430#0 TGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTC 360 consensus_6430#1 TCCATATAACG--CGCACGGGATGGTCCCACACCACTGCGGTGGGGTGCTTTGAC-GGTG 172 * * * * *** * * ***** * * ** ** ** consensus_6430#0 ACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGA 420 consensus_6430#1 TTTTACAACCCCTCCATCCGTCGCACAGTAATGTGTGTGT-GTGTGTGTGTTTGTGTTGT 231 * * * * ** ** * * * *** * * consensus_6430#0 GGAAGAACAAAAAACATA-CAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATC 479 consensus_6430#1 AGTAGTGTAATAGTAGTAGTAATAGTA-GTAAAAAAAACAAAAAAAGGAAGAA------- 283 * ** ** * ** ** * * ** ** *** *** * ** * * consensus_6430#0 GAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACG 539 consensus_6430#1 GAAAAAAAACTCCACCGTGTGAGGCTAGTGCAGATTGTGTGCAGTGTGCAATAAACGACG 343 *** * * * * * * * *********************************** consensus_6430#0 GGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATT 599 consensus_6430#1 GGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATT 403 ************************************************************ consensus_6430#0 TAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATT 659 consensus_6430#1 TAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATT 463 ************************************************************ consensus_6430#0 TTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTA 719 consensus_6430#1 TTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTA 523 ************************************************************ consensus_6430#0 GGTAAAGATGAAGCAGAAATACAACAGCCAGAAGCAG----------------------- 756 consensus_6430#1 GGTAAAGATGAAGCAGAAATACAACAGCAAGAAGCAGAAGAAGAAGGAAAAAACACGTGG 583 **************************** ******** consensus_6430#0 ------------------------------------------------------------ consensus_6430#1 AATTTAGGGCGCATTTATCTTTGTCGATAGCAAAAAAAAAAACGATACTTGTGCACACGA 643 consensus_6430#0 ------------------------------------------------------------ consensus_6430#1 AAATGTCCGCGCGCGCGCTCAGCCTGTTGTAAAATCTATATGATTAGTCAAATAAAAACA 703 consensus_6430#0 --- consensus_6430#1 CTT 706 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||