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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 991 fasta sequence
[TGGCAATCGCTTAGGGGCCGGCTTTATTCAATCAAGTGTTCTGGTCCTTCAATCGTTCAACAGCAGGATGGTAGTATGGCAAGCAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTAAATATGCAATGGTTAAAATTTGGCTTCAGAAAAGCTTCTTTTTATGTTAGTTACATTGTTAAAGATATTGTTCTGCCTCGTTAATGTTTCGTGTTTCCTTCTCTTCTCGTTTAATTACTTTTATCTCGATCGAATTCGATAATTCCGTTTCACTCGTAGAACAATTGTTAGCATAGTTATTTTCATACTTGAAGGCATTACACGCATTGCTTACACGAGTGGTGTTTGGAATTCAAAACTGACATGGAACTGCTGGGCCATGGGTATATTTGTATATTTTCTACTTCACTTTAAATCATCATTCGATCCTTCATCCTATCGATTACGTTTCGCTTGCGTGGGTAACGCCATTATGTTAAGACTTTGTATCGTCTTGAATCACCTAGCGAACATCGCCGTCAACTTCTTTCTACTTCTGTTGCAGGTCTTAGATGATGAAGATTATTTCCTATTGTACTAAATTCTAGTTGCTTTCAACTCATTCACTCTTTCGGCTACTGGGACATTTCAAACGTTTCGTCGATCAAGACACTACCACGCAAAACATAAACCAAGAAACATTATTTGATCTACATTATTTAAAGTGAGAGGATTTCTTTTCGAGCGTTTCATGAACAAATTNCTTCCATGAAAATGAGAGTNATGCAGAAAAAAAACATTATCATGACTTAACATTCAATATCATAAGTAAAATAGGCCAACAGTGACTTACACATTGCAGCATTTTGNTTTTCCTTTTGATGTGCAAACGCTTCCACTAAGTGACTATNAAATAGGAAACGATTGACTGNATCATTTTATTCAATTCTTANAGTTAGACNAACTTGCTGCATTCTGGNATCCATNATATATAAGCGA]
[+] EMBL BX624523 [TGGCAATCGCTTAGGGGCCGGCTTTATTCAATCAAGTGTTCTGGTCCTTCAATCGTTCAACAGCAGGATGGTAGTATGGCAAGCAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTAAATATGCAATGGTTAAAATTTGGCTTCAGAAAAGCTTCTTTTTATGTTAGTTACATTGTTAAAGATATTGTTCTGCCTCGTTAATGTTTCGTGTTTCCTTCTCTTCTCGTTTAATTACTTTTATCTCGATCGAATTCGATAATTCCGTTTCACTCGTAGAACAATTGTTAGCATAGTTATTTTCATACTTGAAGGCATTACACGCATTGCTTACACGAGTGGTGTTTGGAATTCAAAACTGACATGGAACTGCTGGGCCATGGGTATATTTGTATATTTTCTACTTCACTTTAAATCATCATTCGATCCTTCATCCTATCGATTACGTTTCGCTTGCGTGGGTAACGCCATTATGTTAAGACTTTGTATCGTCTTGAATCACCTAGCGAACATCGCCGTCAACTTCTTTCTACTTCTGTTGCAGGTCTTAGATGATGAAGATTATTTCCTATTGTACTAAATTCTAGTTGCTTTCAACTCATTCACTCTTTCGGCTACTGGGACATTTCAAACGTTTCGTCGATCAAGACACTACCACGCAAAACATAAACCAAGAAACATTATTTGATCTACATTATTTAAAGTGAGAGGATTTCTTTTCGAGCG ]
[+] EMBL BX626856 [ GATGGTANTANGGCAAGCAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTAANTATGCAATGGTTAAAATTTGGCTTCAGAAAAGCTTCTTTTTATGTTAGTTACATTGTTAAAGATATTGTTCTGCCTCGTTAATGTTTCGTGTTTCCTTCTCTTCTCGTTTAATTACTTTTATCTCGATCGAATTCGATAATTCCGTTTCACTCGTAGAACAATTGTTAGCATAGTTATTTTCATACTTGAAGGCATTACACGCATTGCTTACACGAGTGGTGTTTGGAATTCAAAACTGACATGGAACTGCTGGGCCATGGGTATATTTGTATATTTTCTACTTCACTTTAAATCATCATTCGATCCTTCATCCTATCGATTACGTTTCGCTTGCGTGGGTAACGCCATTATGTTAAGACTTTGTATCGTCTTGAATCACCTAGCGAACATCGCCGTCAACTTCTTTCTACTTCTGTTGCAGGTCCTAGATGATGAAGATTATTTCCTATTGTACTAAATTCTAGTTGCTTTCAACTCATTCACTCTTTCGGCTACTGGGACATTTCAAACGTTTCGTCGATCAAGACACTACCACGCAAAACATAAACCAAGAAACATTATTTGATCTACATTATTTAAAGTGAGAGGATTTCTTTTCGAGCGTTTCATGAACAAATTNCTTCCATGAAAATGAGAGTNATGCAGAAAAAAAACATTATCATGACTTAACA ]
[+] EMBL BX623155 [ ATGGTTAAAATTTGGCTTCAGAAAAGCTTCTTTTTATGTTAGTTACATTGTTAAAGATATTGTTCTGCCTCGTTAATGTTTCGTGTTTCCTTCTCTTCTCGTTTAATTACTTTTATCTCGATCGAATGCGATAATTCCGTTTCACTCGTAGAACAATTGTTAGCATAGTTATTTTCATACTTGAAGGCATTACACGCATTGCTTACACGAGTGGTGTTTGGAATTCAAAACTGACATGGAACTGCTGGGCCATGGGTATATTTGTATATTTTCTACTTCACTTTAAATCATCATTCGATCCTTCATCCTATCGATTACGTTTCGCTTGCGTGGGTAACGCCATTATGTTAAGACTTTGTATCATCTTGAATCACCTAGCGAACATCGCCGTCAACTTCTTTCTACTTCTGTTGCAGGTCTTAGATGATGAAGATTATTTCCTATTGTACTAAATTCTAGTTGCTTTCAACTCATTCACTCTTTCGGCTACTGGGACGTTTCAAACGTTTCGTCGATCAAGACACTACCACGCAAAACATAAACCAAGAAACATTATTTGATCTACATTATTTAAAGTGAGAGGATTTCTTTTCGAGCGTTTCATGAACAAATTCCTTCCATGAAAATGAGGGTGATGCAGAAAAAAGACATTATCATGACTTAACATTCAATATCATAAGTAAAATAGGCCAACAGTGACTTACACATTGCAGCATTTTGNTTTTCCTTTTGATGTGCAAACGCTTCCACTAAGTGACTATNAAATAGGAAACGATTGACTGNATCATTTTATTCAATTCTTANAGTTAGACNAACTTGCTGCATTCTGGNATCCATNATATATAAGCGA]
consensusID : consensus_6431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 940 fasta sequence
[GGCAAGAATCGGCACAGGAACTCTNGATCGATCGGTTGGCATCGCTTAGGGGCGGCTTTATTCAATCAAGTGTTCTGGGTCCTTCAATCGTTCAACAGCAGGATGGTAGTATGGCAAGCAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTAAATATGCAATGGTTAANATTTGGCTTCAGAAAAGCTTCTTTTNTATGTTAGTTACATTGTTAAAGATATTGTTCTGCCTCGGTTAATGTTTCGTGTTTCCTTCTCTTCTCGTTNAAGTTACTTTTATCTCGATCGANATTCGNATAATTCCGGTTTCACTCGGTAGAACAATTGTTCAGCAGTAGTTATTTTCATACTTGAAGGCATTACACGCATTGCTTACACGAGTGGTGTTTGGAATTCAAAACTGACATGGGAACTGCTGGGCCATGGGTATACTTCTGTATATNNGGCGTACTTCACGTTGTAGAATCATCATTCGATCCTTCAGTCCTATCGAGTATACGGTTTCGCTNTGCCGTGGGGTAACGCNCGACGTCTATGTTAAGNACNNTGTTGGTANTCCGGATCTTTGGAACTCGACCCCTATCTGGAACCATCGCCCTGCTCCTGANCTNTCNTTTTCCTAGCCNTATCCTGTTNGCCACAGGTNTTTACAATGCATTGNACACGCCACTTTAATTTGTCCCCCNACTCNGGGCTTACCCCTAACANAACTTCCCTTNANACCNTCAANCCCCNTATCTCCAAAACCATCCAATTNCCCACCTCCNTATTATCCCNAGACACCTAAAACANNNGNGTCCGNACCACTGTTCTCNCCGAACACCGCCNTTTNTCCCTNCNNCAACNCAGAAACTANCCTCCGTTCACCCCACCGCCCACACACACCCCACATTCAATNCCCCAACNCCGAACGNCCACATNAGAN]
[+] EMBL BX466293 [GGCAAGAATCGGCACAGGAACTCTNGATCGATCGGTTGGCATCGCTTAGGGGCGGCTTTATTCAATCAAGTGTTCTGGGTCCTTCAATCGTTCAACAGCAGGATGGTAGTATGGCAAGCAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTAAATATGCAATGGTTAANATTTGGCTTCAGAAAAGCTTCTTTTNTATGTTAGTTACATTGTTAAAGATATTGTTCTGCCTCGGTTAATGTTTCGTGTTTCCTTCTCTTCTCGTTNAAGTTACTTTTATCTCGATCGANATTCGNATAATTCCGGTTTCACTCGGTAGAACAATTGTTCAGCAGTAGTTATTTTCATACTTGAAGGCATTACACGCATTGCTTACACGAGTGGTGTTTGGAATTCAAAACTGACATGGGAACTGCTGGGCCATGGGTATACTTCTGTATATNNGGCGTACTTCACGTTGTAGAATCATCATTCGATCCTTCAGTCCTATCGAGTATACGGTTTCGCTNTGCCGTGGGGTAACGCNCGACGTCTATGTTAAGNACNNTGTTGGTANTCCGGATCTTTGGAACTCGACCCCTATCTGGAACCATCGCCCTGCTCCTGANCTNTCNTTTTCCTAGCCNTATCCTGTTNGCCACAGGTNTTTACAATGCATTGNACACGCCACTTTAATTTGTCCCCCNACTCNGGGCTTACCCCTAACANAACTTCCCTTNANACCNTCAANCCCCNTATCTCCAAAACCATCCAATTNCCCACCTCCNTATTATCCCNAGACACCTAAAACANNNGNGTCCGNACCACTGTTCTCNCCGAACACCGCCNTTTNTCCCTNCNNCAACNCAGAAACTANCCTCCGTTCACCCCACCGCCCACACACACCCCACATTCAATNCCCCAACNCCGAACGNCCACATNAGAN]
consensusID : consensus_6431#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[CCGAGTTATGTGTGTGTANTGTTCCTGTNCCAGTTTCATTTATCTTCGTTCGCTACTCATCTATTCTATCCGGNGTCCTCCTTGNTGACACGTAAATCGCANATGNTGAAGCAGCCAAAGGAACTGGAGTGGTAATGGATTGTGAATGAGAGAACCACTACGCCAAACTTTAATAGGAATAATACGTGTTTACTTTGGTTCATTCTCTGCTATTATCATAGATGTTTTTTTCTGGCACTACGGTCAAGCAAGCAAAGTGTAAAACACCGATCGATCTGGTTGGCAAACGCTTAGGGCCGGCTTTATTCAATCAAGTGTTTCTGGTCCTTCAATACGTTCAACAGCAGGATGGTAGTATGGCAAGCAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTNACTATGCACTGGTTAAAATTTGGNTTCAGAAAAGCTTCTTTCTGTATGTTAGTATACACTTGTTCAAAGATATCGGTTCTGGNCTCGGTATAATGTTTCGTGTATCCTTCTCTTCTCGGTTTAATTACTTTATCTCGATCGAATTCGATAAATTCCGTATGTCACTCGTTAGACAACATGGTCTANACACTGTTTATTTNCCNATCAAACTTTGGCAAACAGGCCATTAACAACCCGCAATTGGGCTTTAACCACCCGCAAGGTTGGGGTGGTCATGGGCANACGTTCCAACACAACTGCACCCTTAGGCACACCTGNGTGGGGCCCCANAGGNGATACATANTTCTGGCACTACATTCNCTAACTNTCCCACCATACTCAAATTCCCTCATTCCNCGACNCCTTCANACTC]
[+] EMBL AL931796 [CCGAGTTATGTGTGTGTANTGTTCCTGTNCCAGTTTCATTTATCTTCGTTCGCTACTCATCTATTCTATCCGGNGTCCTCCTTGNTGACACGTAAATCGCANATGNTGAAGCAGCCAAAGGAACTGGAGTGGTAATGGATTGTGAATGAGAGAACCACTACGCCAAACTTTAATAGGAATAATACGTGTTTACTTTGGTTCATTCTCTGCTATTATCATAGATGTTTTTTTCTGGCACTACGGTCAAGCAAGCAAAGTGTAAAACACCGATCGATCTGGTTGGCAAACGCTTAGGGCCGGCTTTATTCAATCAAGTGTTTCTGGTCCTTCAATACGTTCAACAGCAGGATGGTAGTATGGCAAGCAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTNACTATGCACTGGTTAAAATTTGGNTTCAGAAAAGCTTCTTTCTGTATGTTAGTATACACTTGTTCAAAGATATCGGTTCTGGNCTCGGTATAATGTTTCGTGTATCCTTCTCTTCTCGGTTTAATTACTTTATCTCGATCGAATTCGATAAATTCCGTATGTCACTCGTTAGACAACATGGTCTANACACTGTTTATTTNCCNATCAAACTTTGGCAAACAGGCCATTAACAACCCGCAATTGGGCTTTAACCACCCGCAAGGTTGGGGTGGTCATGGGCANACGTTCCAACACAACTGCACCCTTAGGCACACCTGNGTGGGGCCCCANAGGNGATACATANTTCTGGCACTACATTCNCTAACTNTCCCACCATACTCAAATTCCCTCATTCCNCGACNCCTTCANACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6431#0 ------------------------------------TGGCAATCGCTTAGGGGCCGGCTT 24
consensus_6431#1 GGCAAGAATCGGCACAGGAACTCTNGATCGATCGGTTGGCA-TCGCTTAGGGGC-GGCTT 58
consensus_6431#2 -----------------------------------------CCGAGTTATGTGTGTGTAN 19
*** * * *
consensus_6431#0 TATTCAATCAAGTGTTCTGG-TCCTTCAATCGTTCAACAGCAGGATGGTAGTATGGCAAG 83
consensus_6431#1 TATTCAATCAAGTGTTCTGGGTCCTTCAATCGTTCAACAGCAGGATGGTAGTATGGCAAG 118
consensus_6431#2 TGTTCC------TGTNCCAGTTTCATTTATCTTCGTTCGCTACTCATCTATTCTATCCGG 73
* *** *** * * * * * *** * * * ** * * * *
consensus_6431#0 CAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTAAATATGCAAT 143
consensus_6431#1 CAGCGGGACTGGCCAGAAGCAAATGTGCATCCACACTCATCAGTGCTGTAAATATGCAAT 178
consensus_6431#2 NGTCCTCCTTGNTGACACGTAAAT---CGCANATGNTGAAGCAGCCAAAGGAACTGGAGT 130
* ** * * * **** * * * * * * ** * *
consensus_6431#0 GGTTAAAATTTGGCTTCAGAAAAGCTTCTTTTT-ATGTTAGTTACATTGTTAAAGATATT 202
consensus_6431#1 GGTTAANATTTGGCTTCAGAAAAGCTTCTTTTNTATGTTAGTTACATTGTTAAAGATATT 238
consensus_6431#2 GGTAATGGATTGTGAATGAGAGAACCACTACGC----CAAACTTTAATAGGAATAATACG 186
*** * *** * * * ** * * * * ** ***
consensus_6431#0 GTTCTGCCTCG-TTAATGTTTCG-TGTTTCCTTCTCTTCTCGTTTAA-TTACTTTTATCT 259
consensus_6431#1 GTTCTGCCTCGGTTAATGTTTCG-TGTTTCCTTCTCTTCTCGTTNAAGTTACTTTTATCT 297
consensus_6431#2 TGTTTACTTTGGTTCATTCTCTGCTATTATCATAGATGTTTTTTTCTGGCACTACGGTCA 246
* * * * * ** ** * * * ** * * * * ** *** **
consensus_6431#0 CGATCGAATTC--GATAATTCCG-TTTCACTCG-TAGAACAATTGTT-AGCA-TAGTTAT 313
consensus_6431#1 CGATCGANATTCGNATAATTCCGGTTTCACTCGGTAGAACAATTGTTCAGCAGTAGTTAT 357
consensus_6431#2 AGCAAGCAAAGTGTAAAACACCGATCGATCTGGTTGG--CAAACGCTTAGGGCCGGCTTT 304
* * * ** *** * ** * * * *** * * ** * * *
consensus_6431#0 TTTCATACTTGAAGGCATTACACGCATTGCTTACACGAGTGGTGTTTGGAATTCAAAACT 373
consensus_6431#1 TTTCATACTTGAAGGCATTACACGCATTGCTTACACGAGTGGTGTTTGGAATTCAAAACT 417
consensus_6431#2 ATTCAATC----AAGTGTTTCTGGTCCTTCA-ATACGTTCAACAGCAGGATGGTAGTA-T 358
**** * * * ** * * * * * *** *** * * *
consensus_6431#0 GACATGG-AACTGCTGGGCCATGGGTATATTTGTATATTTTC----TACTTCACTTTA-- 426
consensus_6431#1 GACATGGGAACTGCTGGGCCATGGGTATACTTCTGTATATNNGGCGTACTTCACGTTGTA 477
consensus_6431#2 GGCAAGCAGCGGGACTGGCCAGAAGCAAATGTGCATCCACAC----TCATCAGTGCTG-- 412
* ** * * ***** * * * * * * * *
consensus_6431#0 -AATCATCATTCGATCCTTCA-TCCTATCGATTAC---GTTTCGCTTG--CGTGGG-TAA 478
consensus_6431#1 GAATCATCATTCGATCCTTCAGTCCTATCGAGTATACGGTTTCGCTNTGCCGTGGGGTAA 537
consensus_6431#2 ---TNACTATGCACTGGTTAAAATTTGGNTTCAGAAAAGCTTCTTTCT---GTATGTTAG 466
* * ** * * ** * * * *** * ** * **
consensus_6431#0 CGCCATTATGTTAAGACTTTGTATCGTCTTGAATCACCTAGCGAACATCGCCGTCAACTT 538
consensus_6431#1 CGCN-CGACGTCTATGTTAAGNACNNTGTTGG--TANTCCGGATCTTTGGAACTCGACCC 594
consensus_6431#2 TATACACTTGTTCAAAG-ATATCGGTTCTGGNCTCGGTATAATGTTTCGTGTATCCTTCT 525
** * * * * **
consensus_6431#0 CTTTCTACTTCTGTTGCAGGTCTTAGATGATGAAGATTATTTCCTATTGTACTAAATTCT 598
consensus_6431#1 CTATCTGGAACCATCGC-----CCTGCTCCTGA--NCTNTCNTTTTCCTAGCCNTATCCT 647
consensus_6431#2 CTTCTCGGTTTAATTAC------TTTATCTCGA--TCGAATTCGATAAATTCCGTATGTC 577
** * * * ** * **
consensus_6431#0 AGTTGCTTTC-AACTCATTCACTCTTTCGGCTACTGGGACATTTCAAACGTTTCGTCGAT 657
consensus_6431#1 GTTNGCCACA-GGTNTTTACAATGCATTGNACAC---GCCACTTTAATTTGTCCCCCNAC 703
consensus_6431#2 ACTCGTTAGACAACATGGTCTANACACTGTTTATT--TNCCNATCAAAC--TTTGGCAAA 633
* * * * * * * ** * * *
consensus_6431#0 CAAGACACTACCACGCAAAACATAAACCAAGAAACATTATTTGATCTACATTATTTAAAG 717
consensus_6431#1 TCNGGGCTTACCCCTAACANAACTTCCCTTNANAC--CNTCAANCCCCNTATCTCCAAAA 761
consensus_6431#2 CAGGCCATTAACA-ACCCGCAATTGGGCTTTAACCACCCGCAAGGTTGGGGTGGTCATGG 692
* ** * * * * * * *
consensus_6431#0 TGAGAGGATTTCTTTTCGAGCGTTTCATGAACAAATTNCTTCCATGAAAATGAGAGTNAT 777
consensus_6431#1 CCATCCAATTNCC-------CACCTC-----CNTATTATCCCNAGACACCTAAAA--CAN 807
consensus_6431#2 GCANACG-TTCCAACACAACTGCACC--------CTTAGGCACACCTGNGTGGGG---CC 740
* ** * * ** * *
consensus_6431#0 GCAGAAAAAAAACATTATCATGACTTAACATTCAATATCATAAGTAAAATAGGCCAACAG 837
consensus_6431#1 NNGNGTCCGNACCACTGTTCTCNCCGAACACCGCCNTTTNTCCCTNCNNCAACNCAGAAA 867
consensus_6431#2 CCANAGGNGATACATANTTCTGGCACTACATTCNCTAACTNTCCCACCATA-CTCAAATT 799
** * * * *** * **
consensus_6431#0 TGACTTACACATTGCAGCATTTTGNTTTTCCTTTTGATGTGCAA-ACGCTTCCACTAAGT 896
consensus_6431#1 CTANCCTCCGTTCACCCCACCGCCCACACACACCCCACATTCAATNCCCCAACNCCGAAC 927
consensus_6431#2 CCCTCATTCCNCGACNCCTTCANACTC--------------------------------- 826
* *
consensus_6431#0 GACTATNAAATAGGAAACGATTGACTGNATCATTTTATTCAATTCTTANAGTTAGACNAA 956
consensus_6431#1 GNCCACATNAGAN----------------------------------------------- 940
consensus_6431#2 ------------------------------------------------------------
consensus_6431#0 CTTGCTGCATTCTGGNATCCATNATATATAAGCGA 991
consensus_6431#1 -----------------------------------
consensus_6431#2 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||