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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGCCCACGCGTCCGCGATGTGACCCAGATGATCGTGACCATACCGGCGGACGATGCGGACCTACCCGGACCAAAAGTGCCGAAGGGCTTTATCGTGTGGGGACCGGGCTGCCAGATCATGGACCTGAACCCGGTAGCTAAGGACGTGATGCGGCTGTTCAGCAAGGAGCGGTTCGTGCCGTGCAGCCCGAAGCAACCGCTCACGTCGATCGAGCAGCACTTTGACAACGACACGGTGCTGGTGCGGTACCACCGGGACCAGCTGGACGCGTTCATGCCGCACTACATGCGGTACGTCCGGTGCTGCTACCAGAGCATCGAGCGGGCCGGCACGAAGGATAAGGCTGATAAGAATTTCTGGGTGGGGGATTGTGTCCCGTTCAACGAATCGTTCCTATTGCCACCGTCGGTACGGAACGGTGTGCTGGTACGCTGCAAGGCCGGTGTGTCCGAGTCGAGCAAGTCGAAGAAGGCGATCTATACCAACGTGCACGCACTGATACGCCCGCAGCCGAGCGTGCGCGAGCGTATGGACAAGTTCCGGGGGAGGACGGAGAAGCGACCGCTCAGCGTGCTGATGATCGGCATCGACAGCATATCGCGGCTCAATCTCATCCGTGCTATGCCCCACACGGCCCAGCATCTGTACGATACGGGCTGGTTTGAGCTCAAGGGATACAAT]
[+] EMBL BM639476 [CCGCCCACGCGTCCGCGATGTGACCCAGATGATCGTGACCATACCGGCGGACGATGCGGACCTACCCGGACCAAAAGTGCCGAAGGGCTTTATCGTGTGGGGACCGGGCTGCCAGATCATGGACCTGAACCCGGTAGCTAAGGACGTGATGCGGCTGTTCAGCAAGGAGCGGTTCGTGCCGTGCAGCCCGAAGCAACCGCTCACGTCGATCGAGCAGCACTTTGACAACGACACGGTGCTGGTGCGGTACCACCGGGACCAGCTGGACGCGTTCATGCCGCACTACATGCGGTACGTCCGGTGCTGCTACCAGAGCATCGAGCGGGCCGGCACGAAGGATAAGGCTGATAAGAATTTCTGGGTGGGGGATTGTGTCCCGTTCAACGAATCGTTCCTATTGCCACCGTCGGTACGGAACGGTGTGCTGGTACGCTGCAAGGCCGGTGTGTCCGAGTCGAGCAAGTCGAAGAAGGCGATCTATACCAACGTGCACGCACTGATACGCCCGCAGCCGAGCGTGCGCGAGCGTATGGACAAGTTCCGGGGGAGGACGGAGAAGCGACCGCTCAGCGTGCTGATGATCGGCATCGACAGCATATCGCGGCTCAATCTCATCCGTGCTATGCCCCACACGGCCCAGCATCTGTACGATACGGGCTGGTTTGAGCTCAAGGGATACAAT]
consensusID : consensus_6432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[CCGCGTAGGCTTGTGCGAATTCTGTTGGGGCCCGCTGCCGCACAGACGCTCGATGTTTTTGCTGTGACGCGCGCGCTGTGATGATACATGTGTGTGTGTGTGAGAGTGTGTGTTTGATGCTGCAGCTCTCGCGTTCTAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCGGTGGATCGGTGCGGCCGGGCGCCAGTACTCGCCATCGGGTTGCTGTTTTGCGTCACCGTGTACCTGTACTTCATGACTGGGACCGATGTGACCCAGATGATCGTGACCATACCGGCGGACGATGCGGACCTACCCGGACCAAAAGATCAAATTGCAACAAAATGCACCAATAACAACGAGCCTGATGCTGCTGCACTCGCGAGCGCAGACGAACTGCAACTCACCTTCAATCGAATTGTTCCGATCGTTCCCCCAAACCAATGCCTCCACTACTACCACCATCATCACCACTACCGGCACCACCACCAACACCACTACCACCAACAACATTGTCCCTGCGATCAACAACAA]
[+] EMBL BM620234 [CCGCGTAGGCTTGTGCGAATTCTGTTGGGGCCCGCTGCCGCACAGACGCTCGATGTTTTTGCTGTGACGCGCGCGCTGTGATGATACATGTGTGTGTGTGTGAGAGTGTGTGTTTGATGCTGCAGCTCTCGCGTTCTAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCGGTGGATCGGTGCGGCCGGGCGCCAGTACTCGCCATCGGGTTGCTGTTTTGCGTCACCGTGTACCTGTACTTCATGACTGGGACCGATGTGACCCAGATGATCGTGACCATACCGGCGGACGATGCGGACCTACCCGGACCAAAAGATCAAATTGCAACAAAATGCACCAATAACAACGAGCCTGATGCTGCTGCACTCGCGAGCGCAGACGAACTGCAACTCACCTTCAATCGAATTGTTCCGATCGTTCCCCCAAACCAATGCCTCCACTACTACCACCATCATCACCACTACCGGCACCACCACCAACACCACTACCACCAACAACATTGTCCCTGCGATCAACAACAA]
consensusID : consensus_6432#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[CCGGTGGCATCTCTGTTGGGTTGGCGTATGTCGAGATAACGTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAAGACGTCTCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTCAGTGCCGAGATAGCACAACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGGATATAGCGTGACCCGGGCGTATTTAGTGTCCCTCTTAGTAAATTGTCCTTTGTGAGGTGTTCGTGTAGTATCAATCAGTGTGTTCGTTGTATAGACAGATTTAATGCCATGTGGGGTAGGTTGGGAGGCAACTGTCAGTGTCCAAATGTGAAAAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCGGTGGATCGGTGCGGCCGGGCGCCAATACTCGCCATCGGGCTGCTGTTTTGCGTCA]
[+] EMBL BM626820 [CCGGTGGCATCTCTGTTGGGTTGGCGTATGTCGAGATAACGTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAAGACGTCTCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTCAGTGCCGAGATAGCACAACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGGATATAGCGTGACCCGGGCGTATTTAGTGTCCCTCTTAGTAAATTGTCCTTTGTGAGGTGTTCGTGTAGTATCAATCAGTGTGTTCGTTGTATAGACAGATTTAATGCCATGTGGGGTAGGTTGGGAGGCAACTGTCAGTGTCCAAATGTGAAAAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCGGTGGATCGGTGCGGCCGGGCGCCAATACTCGCCATCGGGCTGCTGTTTTGCGTCA]
consensusID : consensus_6432#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[CCGCGCCAAGTTGCCAAGCTCTGTGCGTGCACTGCGTCTGCAAAAGCGGGCCCGTCCCCTGGTGTGCGTGTGTCCCTCCTTCGCTCCAGGATGTGCAAGGAAGTGAAGGCTCCTATCGCTGTCGTCGTCCCAGTGCTGTGCTAAATGCGTGTAGCGCATAAAAACATCTAAACGAAACGTCACGGTCCCGTCAATCCGAAGGTGGCGATGGCAATCCTTTAAAAAAGCTACCCACAACCTTTGCTCCTTGATTGGCTGCTAGCTGGTACCGATGGTCCGGATGGTTCTTCGGGCTGCCGGAGCTACTTCCTGCGCTGCGTCCTCTGTGAGCGTACTGTGAAAGCTGCGTACTGTAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCCGGTGGATCGGTGCGGCCGGGCGCCAGTACTCGCCATCGGGTTGCT]
[+] EMBL BM655466 [CCGCGCCAAGTTGCCAAGCTCTGTGCGTGCACTGCGTCTGCAAAAGCGGGCCCGTCCCCTGGTGTGCGTGTGTCCCTCCTTCGCTCCAGGATGTGCAAGGAAGTGAAGGCTCCTATCGCTGTCGTCGTCCCAGTGCTGTGCTAAATGCGTGTAGCGCATAAAAACATCTAAACGAAACGTCACGGTCCCGTCAATCCGAAGGTGGCGATGGCAATCCTTTAAAAAAGCTACCCACAACCTTTGCTCCTTGATTGGCTGCTAGCTGGTACCGATGGTCCGGATGGTTCTTCGGGCTGCCGGAGCTACTTCCTGCGCTGCGTCCTCTGTGAGCGTACTGTGAAAGCTGCGTACTGTAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCCGGTGGATCGGTGCGGCCGGGCGCCAGTACTCGCCATCGGGTTGCT]
consensusID : consensus_6432#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[CCGCCCACGCGTCCGCGATTCACCCGATCAACGTCAACAAGAGAGCGTGCTGCTGTGACGCTTCTCCGTTGGTGCGTATGGTTCAACGCGCAGCGAGATGTGCTGTGGCATCTCTGTTGGGTTGGCGTATGTCGAGATAACGTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAAGACGTCTCGTGTGTGTGTGTGCCCTCAGTGCCGAGATAGCACGACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGGATATAGCGTGACCCGGGCGTATTTAGTGTCCCTTTCAGTAAATTGTCCTTTGTGAGCTGTTCGTGTAGTATCAATCAGTGTGTCCGGTGTGTAGACAGATTTAATGTCATGTGGGGTAGGTTGGGAGGCAACTGTCCGTGGCAAAATGTGAAAAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCG]
[+] EMBL BM652904 [CCGCCCACGCGTCCGCGATTCACCCGATCAACGTCAACAAGAGAGCGTGCTGCTGTGACGCTTCTCCGTTGGTGCGTATGGTTCAACGCGCAGCGAGATGTGCTGTGGCATCTCTGTTGGGTTGGCGTATGTCGAGATAACGTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAAGACGTCTCGTGTGTGTGTGTGCCCTCAGTGCCGAGATAGCACGACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGGATATAGCGTGACCCGGGCGTATTTAGTGTCCCTTTCAGTAAATTGTCCTTTGTGAGCTGTTCGTGTAGTATCAATCAGTGTGTCCGGTGTGTAGACAGATTTAATGTCATGTGGGGTAGGTTGGGAGGCAACTGTCCGTGGCAAAATGTGAAAAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6432#1 ------------------------------------------------------------
consensus_6432#3 ------------------------------------------------------------
consensus_6432#2 ------------------------------------------------------------
consensus_6432#4 CCGCCCACGCGTCCGCGATTCACCCGATCAACGTCAACAAGAGAGCGTGCTGCTGTGACG 60
consensus_6432#0 ------------------------------------------------------------
consensus_6432#1 ------------------CCGCGTAGGCTTGTGCGAATTCTGTTGGGGC-CCGCTGCCGC 41
consensus_6432#3 ------------------CCGCGCCAAGTTGC-CAAGCTCTGTGCGTGCACTGCGTCTGC 41
consensus_6432#2 -----------------------------------------CCGGTGGCATCTCTGTTGG 19
consensus_6432#4 CTTCTCCGTTGGTGCGTATGGTTCAACGCGCAGCGAGATGTGCTGTGGCATCTCTGTTGG 120
consensus_6432#0 ------------------CCGCCCACGCGTCCGCGATGTGACCCAGATGATCGTGACCAT 42
consensus_6432#1 ACAGACGCTCGATGTTTTTGCTGTGACGCGCGCGCTGTGATGATACATGTGTGTGTGTGT 101
consensus_6432#3 AAAAGCG---GGCCCGTCCCCTGGTGTGCGTGTGTCCCTCCTTCGCTCCAGGATGTGCAA 98
consensus_6432#2 GTTGGCGTATGTCGAGATAAC-GTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAA 78
consensus_6432#4 GTTGGCGTATGTCGAGATAAC-GTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAA 179
consensus_6432#0 ACCGGCGGACGATGCGGACCTACCCGGACCAAAAGTGCCGAAGGGCTTTATCGTGTGGGG 102
** * * * *
consensus_6432#1 GAGAGTGTGTGTTTGATGCTGCAGCTCTCG-CGTTCTAGCAATGAGCATCCGCTATGAAA 160
consensus_6432#3 GGAAGTGAAGGCTC----CTATCGCTGTCGTCGTCCCAGTGCTGTGC--------TAAAT 146
consensus_6432#2 GACGTCTCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTCAGTGC---CGAGATAGCA 135
consensus_6432#4 GACGTCTCG----------------TGTGTGTGTGTGCCCTCAGTGC---CGAGATAGCA 220
consensus_6432#0 ACCGGGCTG----CCAGATCATGGACCTGAACCCGGTAGCTAAGGACG--TGATGCGGCT 156
* * *
consensus_6432#1 CCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGA 220
consensus_6432#3 GCGTGTAGCGCATAAAAACATCTAAACGAAACG-TCACGGTCCCGTCAATCCGAAGGTGG 205
consensus_6432#2 CAACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGG 195
consensus_6432#4 CGACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGG 280
consensus_6432#0 GTTCAGCAAGGAGCGGTTCGTGCCGTGCAGCCCGAAGCAACCGCTCACGTCGATCGAGCA 216
* *
consensus_6432#1 AAGCAACAGCATCATCACAGA-CCATCGCCAACCTGCAC-CAACAATCGGCGCGATGCTG 278
consensus_6432#3 CGATGGCAATCCTTTAAAAAAGCTACCCACAACCTTTGCTCCTTGATTGGCTGCTAGCTG 265
consensus_6432#2 ATATAGCGTGACCCGGGCGTATTTAGTGTCC-CTCTTAGTAAATTGTCCTTTGTGAGGTG 254
consensus_6432#4 ATATAGCGTGACCCGGGCGTATTTAGTGTCC-CTTTCAGTAAATTGTCCTTTGTGAGCTG 339
consensus_6432#0 GCACTTTGACAACGACACGGTGCTGGTGCGGTACCACCGGGACCAGCTGGACGCGTTCAT 276
consensus_6432#1 GCGGCGGTGG-CCGAGTGGC-CGGCGGG--CTGCTGCACCCGGTGGAT-CGGTGCGGCCG 333
consensus_6432#3 GTACCGATGGTCCGGATGGTTCTTCGGG--CTGCCGGAGCTACTTCCTGCGCTGCGTCCT 323
consensus_6432#2 TTCGTGTAGTATCAATCAGTGTGTTCGT--TGTATAGACAGATTTAATGCCATGTGGGGT 312
consensus_6432#4 TTCGTGTAGTATCAATCAGTGTGTCCGG--TGTGTAGACAGATTTAATGTCATGTGGGGT 397
consensus_6432#0 GCCGCACTA---CATGCGGTACGTCCGGTGCTGCTACCAGAGCATCGAGCGGGCCGGCAC 333
* * * *
consensus_6432#1 G-GCGCCAGTACT--CGCCATCGGGTTGCTGTTTTGC---GTCACCGTGTACCTGTACTT 387
consensus_6432#3 CTGTGAGCGTACTG-TGAAAGCTGCGTACTGTAGCA----ATGAGCATCCGCTATGAAAC 378
consensus_6432#2 AGGTTGGGAGGCAACTGTCAGTGTCCAAATGTGAAAAGCAATGAGCATCCGCTATGAAAC 372
consensus_6432#4 AGGTTGGGAGGCAACTGTCCGTGGCAAAATGTGAAAAGCAATGAGCATCCGCTATGAAAC 457
consensus_6432#0 GAAGGATAAGGCTGATAAGAATTTCTGGGTGGGGGATTGTGTCCCGTTCAACGAATCGTT 393
* ** * * *
consensus_6432#1 C--ATGACTGGGACCGATG-TGACCCAGATGATCGT-GACCATACCGGCGGACGATGCGG 443
consensus_6432#3 C--ATCGGTGTTACAGACACTGCTCGAGCCGGCGAC-CACCGCACTGGCGG-TGCTCAGT 434
consensus_6432#2 C--ATCGGTGTTACAGACACTGCTCGAGCCGGCGAC-CACCGCACTGGCGG-TGCTCAGT 428
consensus_6432#4 C--ATCGGTGTTACAGACACTGCTCGAGCCGGCGAC-CACCGCACTGGCGG-TGCTCAGT 513
consensus_6432#0 CCTATTGCCACCGTCGGTACGGAACGGTGTGCTGGTACGCTGCAAGGCCGGTGTGTCCGA 453
* ** * * * * * * * *** * *
consensus_6432#1 ACCTACCCGGACCAAAAGATCAAATTG-CAACAAAATGCACCAATAACAACGAGCCTGAT 502
consensus_6432#3 AGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAA---CAATCGGCGCGAT 491
consensus_6432#2 AGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAA---CAATCGGCGCGAT 485
consensus_6432#4 AGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAA---CAATCG------- 563
consensus_6432#0 GTCGAGCAAGTCGAAGAAGGCGATCTA-TACCAACGTGCACGCAC--TGATACGCCCGCA 510
* * * * * *** ***** * *
consensus_6432#1 GCTG-CTGCACTCGC-GAGCG--CAGACGAACTGCAACTCACCTTCAATCGAATTGTTCC 558
consensus_6432#3 GCTGGCGGCGGTGGCCGAGTG-GCCGGCGGGCTGCTGCACCCC----GGTGGATCGGTGC 546
consensus_6432#2 GCTGGCGGCGGTGGCCGAGTG-GCCGGCGGGCTGCTGCACCCG-----GTGGATCGGTGC 539
consensus_6432#4 ------------------------------------------------------------
consensus_6432#0 GCCG--AGCGTGCGC-GAGCGTATGGACAAGTTCCGGGGGAGGAC--GGAGAAGCGACCG 565
consensus_6432#1 GATCGTTCCCCCAAACCAATGCCTCCACTACTACCACCATCATCACCACTACCGGCACCA 618
consensus_6432#3 GGCCGGGCGCCAGTACTCGCCATCGGGTTGCT---------------------------- 578
consensus_6432#2 GGCCGGGCGCCAATACTCGCCATCGGGCTGCTGTTTTGCGTCA----------------- 582
consensus_6432#4 ------------------------------------------------------------
consensus_6432#0 CTCAGCGTGCTGATGATCGGCATCGACAGCATATCGCGGCTCAATCTCATCCGTGCTATG 625
consensus_6432#1 CCACCAACACCACTACCACCAACAACATTGTCCCTGCGATCAACAACAA--------- 667
consensus_6432#3 ----------------------------------------------------------
consensus_6432#2 ----------------------------------------------------------
consensus_6432#4 ----------------------------------------------------------
consensus_6432#0 CCCCACACGGC-CCAGCATCTGTACGATACGGGCTGGTTTGAGCTCAAGGGATACAAT 682
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||