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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 832 fasta sequence
[GAATCCCCCGAGG-NCA-AGTGTAGATGCGTGTGTGAAACGAGCTTAGATTAATTATTCTATTTCAGTGATAAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACTTTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCTGCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGCATCGTGTAGACGTGTGCGATGAATGTAGGTGAAACAGCCGTAAGTAGGATTATGAACTCGCAAGATCAAACATTGAGCCAGCAGCAGGCTGCCTGGATGGCAGCCGCCCAGGCAGTCCAGCAGCAGACCGCAGCTGGTGGGGGCTATGGCGGAGCGTACGGAATGAACCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAATATGCTCAGTTTTACGCGCTGTACCAGCAGCTGCAGTACAGCAACTCTGGCGGTGGCCTGCAGGGCAACATGGGACAGGCTGGCTTCGGGACGGCCAACAGCAACAAGGGCGTTAGCGGCGTGGGCGGCACGATGAACAACTCACCAGCCGGATTTTCGGCTGGCCCAATGTCCGATAACGGTGTCGCCGGTGGTATGGGTTCGCCTGGCATTGGAATTGCGGGTGGCAAGTTTTTCAGCTCTCCTCAGCAGAACCAGCAGCAGCAGCAACAGCAGTCCGGTAATGACGGAATGGGCTTCAAGCAGGCGCCCAGTCAGTTCGGGNCGATTCGCTTCAACATCAACAAGCATCCGCAGCGGGTGAGCCCCGATCGTGGCCAGCAATCCNCTGGCACA]
[+] EMBL AL932334 [GAATCCCCCGAGG NCA AGTGTAGATGCGTGTGTGAAACGAGCTTAGATTAATTATTCTATTTCAGTGATAAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACTTTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCTGCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGCATCGTGTAGACGTGTGCGATGAATGTAGGTGAAACAGCCGTAAGTAGGATTATGAACTCGCAAGATCAAACATTGAGCCAGCAGCAGGCTGCCTGGATGGCAGCCGCCCAGGCAGTCCAGCAGCAGACCGCAGCTGGTGG ]
[+] EMBL AL929733 [ gATCGCCCGAGGTGCAGAGTGTAGATGCGTGTGTGAAACGAGCTTAGATTAATTATTCTATTTCAGTGATAAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACTTTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCTGCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGCATCGTGTAGACGTGTGCGATGAATGTAGGTGAAACAGCCGTAAGTAGGATTATGAACTCGCAAGATCAAACATTGAGCCAGCAGCAGGCTGCC ]
[+] EMBL BX620028 [ AGGAACACTTTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCTGCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGCATCGTGTAGACGTGTGCGATGAATGTAGGTGAAACAGCCGTAAGTAGGATTATGAACTCGCAAGATCAAACATTGAGCCAGCAGCAGGCTGCCTGGATGGCAGCCGCCCAGGCAGTCCAGCAGCAGACCGCAGCTGGTGGGGGCTATGGCGGAGCGTACGGAATGAACCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAATATGCTCAGTTTTACGCGCTGTACCAGCAGCTGCAGTACAGCAACTCTGGCGGTGGCCTGCAGGGCAACATGGGACAGGCTGGCTTCGGGACGGCCAACAGCAACAAGGGCGTTAGCGGCGTGGGCGGCACGATGAACAACTCACCAGCCGGATTTTCGGCTGGCCCAATGTCCGATAACGGTGTCGCCGGTGGTATGGGTTCGCCTGGCATTGGAATTGCGGGTGGCAAGTTTTTCAGCTCTCCTCAGCAGAACCAGCAGCAGCAGCAACAGCAGTCCGGTAATGACGGAATGGGCTTCAAGCAGGCGCCCAGTCAGTTCGGGNCGATTCGCTTCAACATCAACAAGCATCCGCAGCGGGTGAGCCCCGATCGTGGCCAGCAATCCNCTGGCACA]
consensusID : consensus_6436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[CCGATTTTCGCAGAGTGTAGATGCGTGTGTGAAACGAGCTTAGATTAATTATTCTATTTCAGTGATAAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACTTTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCTGCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGCATCGTGTAGACGTGTGCGATGAATGTAGGTGAAACAGCCGTAAGTAGGATTATGAACTCGCAAGATCAAACATTGAGCCAGCAGCAGGCTGCCTGGATGGCAGCCGCCCAGGCAGTCCAGCAGCAGACCGCAGCTGGTGGGGGCTATGGCGGAGCGTACGGAATGAACCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAATATGCTCAGTTTTACGCGCTGTACCAGCAGCTGCAGTACAGCAACTCTGGCGGTGGCCTGCAGGGCAACATGGGACAGGCTGGCTTCGGGACGGCCAACAGCAACAAGGGCGTTAGCGGCGTGGGCGGCACGATGAACAACTCACCAGCCGGATTTTCGGCTGGCCCAATGTCCGATAACGGTGTCGCCGGGGGGTATGGGTTCGCCTGGCATTGGAATTGCGGGTGGCAAGTTTTTCAGCTCTCCTC]
[+] EMBL BM640399 [CCGATTTTCGCAGAGTGTAGATGCGTGTGTGAAACGAGCTTAGATTAATTATTCTATTTCAGTGATAAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACTTTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCTGCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGCATCGTGTAGACGTGTGCGATGAATGTAGGTGAAACAGCCGTAAGTAGGATTATGAACTCGCAAGATCAAACATTGAGCCAGCAGCAGGCTGCCTGGATGGCAGCCGCCCAGGCAGTCCAGCAGCAGACCGCAGCTGGTGGGGGCTATGGCGGAGCGTACGGAATGAACCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAATATGCTCAGTTTTACGCGCTGTACCAGCAGCTGCAGTACAGCAACTCTGGCGGTGGCCTGCAGGGCAACATGGGACAGGCTGGCTTCGGGACGGCCAACAGCAACAAGGGCGTTAGCGGCGTGGGCGGCACGATGAACAACTCACCAGCCGGATTTTCGGCTGGCCCAATGTCCGATAACGGTGTCGCCGGGGGGTATGGGTTCGCCTGGCATTGGAATTGCGGGTGGCAAGTTTTTCAGCTCTCCTC]
consensusID : consensus_6436#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[GCAGAATTCCCGCACGAGGGTGATAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACTTTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCTGCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGGCATCGTGGTAAGACGTGTGCGATGAATGTAGGTGAAACAGGCGGTAAAGGTAGGGATTATTGAACTCGGCAAGATCAAACATTGAGCCAAAGCAAGNAAGCTTGGCTTGGGATTGGCCAAGGACCGGCCCAAGGCCAGGTCCCANNGCAAGCAAGAACCGCGAAGCTTGTGAGGGGCTTAATTGGCCGGAGCGTTTTAGCTCTGGTATTGGGAAAACTTTCTCGGTGGCCACNATTGCATGGCGGAAACNAGAAAACTTACTATTTTTATTTCCNATTGNCATTCCCCGGCTTTTTAAACAATGNGATGNCTTGTACGTAATTTGAAGTTTGGTTAATCCCCNGTTTGTGGATAAAGGCAAAACGGANTATAGACCTTNNGCACAATTTTTGTAAGAACCCACATTCACTT]
[+] EMBL BX467685 [GCAGAATTCCCGCACGAGGGTGATAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACTTTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCTGCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGGCATCGTGGTAAGACGTGTGCGATGAATGTAGGTGAAACAGGCGGTAAAGGTAGGGATTATTGAACTCGGCAAGATCAAACATTGAGCCAAAGCAAGNAAGCTTGGCTTGGGATTGGCCAAGGACCGGCCCAAGGCCAGGTCCCANNGCAAGCAAGAACCGCGAAGCTTGTGAGGGGCTTAATTGGCCGGAGCGTTTTAGCTCTGGTATTGGGAAAACTTTCTCGGTGGCCACNATTGCATGGCGGAAACNAGAAAACTTACTATTTTTATTTCCNATTGNCATTCCCCGGCTTTTTAAACAATGNGATGNCTTGTACGTAATTTGAAGTTTGGTTAATCCCCNGTTTGTGGATAAAGGCAAAACGGANTATAGACCTTNNGCACAATTTTTGTAAGAACCCACATTCACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6436#0 GAATCCCCCGAGGNCAAGTGTAGATGCGTGTGTGAAACGAGCTTAGATTAATTATTCTAT 60
consensus_6436#1 ---CCGATTTTCGCAGAGTGTAGATGCGTGTGTGAAACGAGCTTAGATTAATTATTCTAT 57
consensus_6436#2 ---------------------------------------------GCAGAATTCCCGCAC 15
* **** *
consensus_6436#0 TTCAGTGATAAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACT 120
consensus_6436#1 TTCAGTGATAAAAACGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACT 117
consensus_6436#2 GAGGGTGATAAAA-CGTGCAAAACCCTTTGAAAAACCAGCACCAGCCAACGAGGAACACT 74
********* **********************************************
consensus_6436#0 TTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCT 180
consensus_6436#1 TTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCT 177
consensus_6436#2 TTTCTGCTACACTAGCACCATTTCCTTTTCGGCACGGGTGGTGTGTTTTTTCGGGACGCT 134
************************************************************
consensus_6436#0 GCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCG-CATCGTGT 239
consensus_6436#1 GCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCG-CATCGTGT 236
consensus_6436#2 GCGGGAAGCAAACGACGTGGACATCGATCCCTGGCGTCAACGTGTCCATCGGCATCGTGG 194
*************************************************** *******
consensus_6436#0 --AGACGTGTGCGATGAATGTAGGTGAAACAGCCGT---AAGTAGG-ATTAT-GAACTCG 292
consensus_6436#1 --AGACGTGTGCGATGAATGTAGGTGAAACAGCCGT---AAGTAGG-ATTAT-GAACTCG 289
consensus_6436#2 TAAGACGTGTGCGATGAATGTAGGTGAAACAGGCGGTAAAGGTAGGGATTATTGAACTCG 254
****************************** ** * ***** ***** *******
consensus_6436#0 -CAAGATCAAACATTGAGCCAGCAGCAGGCTGCCTGGATGGCAGCCGCCCAGGCAGTCCA 351
consensus_6436#1 -CAAGATCAAACATTGAGCCAGCAGCAGGCTGCCTGGATGGCAGCCGCCCAGGCAGTCCA 348
consensus_6436#2 GCAAGATCAAACATTGAGCCAAAGCAAGNAAGCTTGGCTTGGGATTGGCCAAG------- 307
******************** ** ** *** * * * *** *
consensus_6436#0 GCAGCAGACCGCAGCTGGTGGGGGCTATGGCGGAGCGTACGGAATGAACCAGCAGCAGCA 411
consensus_6436#1 GCAGCAGACCGCAGCTGGTGGGGGCTATGGCGGAGCGTACGGAATGAACCAGCAGCAGCA 408
consensus_6436#2 ------GACCG-----------GCCCAAGGCCAGGT------------CCCANNGCA--A 336
***** * * * *** * ** *** *
consensus_6436#0 GCAGCAACAGCAACAGCAACAGCAATATGCTCAGTTTTACGCGCTGTACCAGCAGCTGCA 471
consensus_6436#1 GCAGCAACAGCAACAGCAACAGCAATATGCTCAGTTTTACGCGCTGTACCAGCAGCTGCA 468
consensus_6436#2 GCAAGAACCGCGA-AGC--TTGTGAGGGGCTTAATTGGCCGGAGCGTTTTAGCTCTGGTA 393
*** *** ** * *** * * *** * ** ** ** *** * *
consensus_6436#0 GTACAGCAACTCTGGCGGTGGCCTGCAGGGCAACATGGGACAGGCTGGCTTCGGGACGGC 531
consensus_6436#1 GTACAGCAACTCTGGCGGTGGCCTGCAGGGCAACATGGGACAGGCTGGCTTCGGGACGGC 528
consensus_6436#2 TTGGGAAAACTTTCTCGGTGGCCACNATTGCATGGCGGAAACNAGAAAACTTACTATTTT 453
* **** * ******** * *** ** * * *
consensus_6436#0 CAACAGCAACAAGGG--CGTTAGCGGCGTGGGCGGCACGATGAACAACTCACCAGCCGGA 589
consensus_6436#1 CAACAGCAACAAGGG--CGTTAGCGGCGTGGGCGGCACGATGAACAACTCACCAGCCGGA 586
consensus_6436#2 TATTTCCNATTGNCATTCCCCGGCTTTTTAAACAATGNGATGNCTTGTACGTAATTTGAA 513
* * * * ** * * **** * * * *
consensus_6436#0 TTTTCGGCTGGCCCAATGTCCGATAACGGTGTCGCCGGTGG-TATGGGTTCGCCTGGCAT 648
consensus_6436#1 TTTTCGGCTGGCCCAATGTCCGATAACGGTGTCGCCGGGGGGTATGGGTTCGCCTGGCAT 646
consensus_6436#2 GTTT-GGTTAATCCCCNGTTTGTGGATAAAGGCAAAACGGANTATAGACCT--TNNGCAC 570
*** ** * ** ** * * * * * *** * ***
consensus_6436#0 TGGAATTGCGGGTGGCAAGTTTTTCAGCTCTCCTCAGCAGAACCAGCAGCAGCAGCAACA 708
consensus_6436#1 TGGAATTGCGGGTGGCAAGTTTTTCAGCTCTCCTC------------------------- 681
consensus_6436#2 AATTTTTGTAAGAACCCA--CATTCACTT------------------------------- 597
*** * * * **** *
consensus_6436#0 GCAGTCCGGTAATGACGGAATGGGCTTCAAGCAGGCGCCCAGTCAGTTCGGGNCGATTCG 768
consensus_6436#1 ------------------------------------------------------------
consensus_6436#2 ------------------------------------------------------------
consensus_6436#0 CTTCAACATCAACAAGCATCCGCAGCGGGTGAGCCCCGATCGTGGCCAGCAATCCNCTGG 828
consensus_6436#1 ------------------------------------------------------------
consensus_6436#2 ------------------------------------------------------------
consensus_6436#0 CACA 832
consensus_6436#1 ----
consensus_6436#2 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||