cluster # 6438

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Anopheles gambiae
cluster # 6438 cluster # 6438 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6438#0 length = 913 sequences # 3

consensus_6438#1 length = 280 sequences # 1
consensus_6438#2 length = 270 sequences # 1

consensusID : consensus_6438#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 913
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGACCTAACCGTGCAACATCGACGCTCGCGCGTTGTTTCAATATCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGGTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGCATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCTGGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAAGCTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTCGCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACCTGTTTGCAACCATCTCTTACGAAACAA-CTCGAGCTGCGATTCTAACGTGCGCGCGTAACGACTGCCTTTCAAGACAAATCAGTGTGTGTGT-GGAATGAGCTGACCAGCGTGAAATCCGGCAATGCACCTCCTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACATTCGGTCATAATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGGTTTCAGCTT]

[+] EMBL BM588647             [CCGCCCACGCGTCCGCCCACGCGTCCGACCTAACCGTGCAACATCGACGCTCGCGCGTTGTTTCAATATCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGGTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGTATGAAGGTGAAGGCCGATCGTGACGAAGCGTCCCCGTACGCCGCTATGTTGGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAAGCTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTCGCCCGTTCGTCGATGAAGATCGGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGC                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS093DP             [                                                               CAATTTCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCA GTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGCATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCTGGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAAGCTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTCGCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACCTGTTTGCAACCATCTCTTACGAAACAA CTCGAGCTGCGATTCTAACGTGCGCGCGTAACGACTGCCTTTCAAGACAAATCAGTGTGTGTGT GGAATGAGCTGACCAGCGTGAAATCCGGCAATGCACCTCCTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACATTCGGTCATAATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGG         ]
[-] EMBL CNS093DQ             [                                                                                                                                                   GCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGGTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCAAACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGCATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCTGGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGTACTGCACATCAAAGTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTCGCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACCTGTTTGCAACCATTTCTTACGAAACAATCTCGAGCTGCGATTCTAACGTGCGCGCGTAACAACTGCCTTTCAAGACAAATCAGTGTGTGTGTGGGAATGAGCTGACCAGCGTGAAATCCGGCAATGCACCTCCTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACATTCGGTCATAATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGGTTTCAGCTT]




>consensus_6438#0
CCGCCCACGCGTCCGCCCACGCGTCCGACCTAACCGTGCAACATCGACGCTCGCGCGTTG
TTTCAATATCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCC
ATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCG
CAGGTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGAT
ACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGC
ATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCTGGCCGCCCAG
GATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAAGCTGCGCGCT
ACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTC
GCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCT
ACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACCTGTTTGCAAC
CATCTCTTACGAAACAACTCGAGCTGCGATTCTAACGTGCGCGCGTAACGACTGCCTTTC
AAGACAAATCAGTGTGTGTGTGGAATGAGCTGACCAGCGTGAAATCCGGCAATGCACCTC
CTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACATTCGGTCATA
ATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCTATGAACGACG
AACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGC
AAGGTTTCAGCTT

consensusID : consensus_6438#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [CGCGTCCGTATCCGCCTAACCGTGCAACATCGACGCTCGGCCGTTGTTTCAATTTCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGTCGCCGACGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGATCTGTCGCAAGAAACCATCTCCCGGTGACGCGGCATG]

[+] EMBL AGAA13322            [CGCGTCCGTATCCGCCTAACCGTGCAACATCGACGCTCGGCCGTTGTTTCAATTTCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGTCGCCGACGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGATCTGTCGCAAGAAACCATCTCCCGGTGACGCGGCATG]




>consensus_6438#1
CGCGTCCGTATCCGCCTAACCGTGCAACATCGACGCTCGGCCGTTGTTTCAATTTCAGGC
GTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCG
CAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGTCGCCGACGTG
AGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGA
CGATCTGTCGCAAGAAACCATCTCCCGGTGACGCGGCATG

consensusID : consensus_6438#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [GTCACACTTCGGTCTAATCGTTGTTAGAAAAGCAGCCAATCGAATCGAAGAACTCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGAGTGTGGGGTAAATGTAGTGTGTATTTTTGTTTTAAATTCGCTCGAAAATACACGTAATCGATAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AF002676             [GTCACACTTCGGTCTAATCGTTGTTAGAAAAGCAGCCAATCGAATCGAAGAACTCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGAGTGTGGGGTAAATGTAGTGTGTATTTTTGTTTTAAATTCGCTCGAAAATACACGTAATCGATAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6438#2
GTCACACTTCGGTCTAATCGTTGTTAGAAAAGCAGCCAATCGAATCGAAGAACTCCTAAT
CTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTT
TTTTGTTGGTGCAAGAGTGTGGGGTAAATGTAGTGTGTATTTTTGTTTTAAATTCGCTCG
AAAATACACGTAATCGATAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6438#0      CCGCCCACGCGTCCGCCCACGCGTCCGACCTAACCGT-GCAACATCGACGCTCGCGCG-- 57
consensus_6438#1      -------------CGCGTCCGTATCCG-CCTAACCGT-GCAACATCGACGCTCGGCCG-- 43
consensus_6438#2      ----------------GTCACACTTCGGTCTAATCGTTGTTAGAAAAGCAGCCAATCGAA 44
                                             * **  **** *** *  * *    *   *   **  

consensus_6438#0      TTG------TTTCAATATCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGA 111
consensus_6438#1      TTG------TTTCAATTTCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGA 97
consensus_6438#2      TCGAAGAACTCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGA 104
                      * *      *   *** *  *    *  ***        *   *  *****    * ***

consensus_6438#0      CGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCG 171
consensus_6438#1      CGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCG 157
consensus_6438#2      CTCTTAAGGTTCGGTT--TTTTGTTGGTGCAAGAGTGTGGGGTAAATGTAGT--GTGTAT 160
                      * ****    * * *   * * *   *   ***   * *  * **  *  *   ****  

consensus_6438#0      CTCGGCCCGCAGGTCCG-CGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAG 230
consensus_6438#1      CTCGGCCCGCAG-TCGC-CGACG-TGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAG 214
consensus_6438#2      TTTTGTTTTAAATTCGCTCGAAAATACA--CGTAATCGATAACAGAAAAAAAAAAAAAAA 218
                       *  *     *  **   ***   *     ***  ***       * * *   *    * 

consensus_6438#0      CTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGT 290
consensus_6438#1      CTTCAACGATACGTTCGTGCATGTGACG-ATCTGTC--GCAAG-AAACCATCTCCCGG-T 269
consensus_6438#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------- 270
                          **  * *         *    *   *          **  ***  *          

consensus_6438#0      GACGGGCGGCATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCT 350
consensus_6438#1      GAC--GCGGCATG----------------------------------------------- 280
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      GGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAA 410
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      GCTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCT 470
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      CCGTGCGCTCGCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCC 530
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      GTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACC 590
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      TGTTTGCAACCATCTCTTACGAAACAACTCGAGCTGCGATTCTAACGTGCGCGCGTAACG 650
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      ACTGCCTTTCAAGACAAATCAGTGTGTGTGTGGAATGAGCTGACCAGCGTGAAATCCGGC 710
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      AATGCACCTCCTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACA 770
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      TTCGGTCATAATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCT 830
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      ATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTT 890
consensus_6438#1      ------------------------------------------------------------
consensus_6438#2      ------------------------------------------------------------
                                                                                  

consensus_6438#0      TTGTTGGTGCAAGGTTTCAGCTT 913
consensus_6438#1      -----------------------
consensus_6438#2      -----------------------