These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 913 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGACCTAACCGTGCAACATCGACGCTCGCGCGTTGTTTCAATATCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGGTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGCATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCTGGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAAGCTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTCGCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACCTGTTTGCAACCATCTCTTACGAAACAA-CTCGAGCTGCGATTCTAACGTGCGCGCGTAACGACTGCCTTTCAAGACAAATCAGTGTGTGTGT-GGAATGAGCTGACCAGCGTGAAATCCGGCAATGCACCTCCTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACATTCGGTCATAATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGGTTTCAGCTT] [+] EMBL BM588647 [CCGCCCACGCGTCCGCCCACGCGTCCGACCTAACCGTGCAACATCGACGCTCGCGCGTTGTTTCAATATCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGGTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGTATGAAGGTGAAGGCCGATCGTGACGAAGCGTCCCCGTACGCCGCTATGTTGGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAAGCTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTCGCCCGTTCGTCGATGAAGATCGGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGC ] [+] EMBL CNS093DP [ CAATTTCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCA GTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGCATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCTGGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAAGCTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTCGCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACCTGTTTGCAACCATCTCTTACGAAACAA CTCGAGCTGCGATTCTAACGTGCGCGCGTAACGACTGCCTTTCAAGACAAATCAGTGTGTGTGT GGAATGAGCTGACCAGCGTGAAATCCGGCAATGCACCTCCTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACATTCGGTCATAATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGG ] [-] EMBL CNS093DQ [ GCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGGTCCGCGACGGTGAGGTCGTGTTCGGCGTGGCAAACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGTGACGGGCGGCATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCTGGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGTACTGCACATCAAAGTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCTCCGTGCGCTCGCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCCGTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACCTGTTTGCAACCATTTCTTACGAAACAATCTCGAGCTGCGATTCTAACGTGCGCGCGTAACAACTGCCTTTCAAGACAAATCAGTGTGTGTGTGGGAATGAGCTGACCAGCGTGAAATCCGGCAATGCACCTCCTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACATTCGGTCATAATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGGTTTCAGCTT] consensusID : consensus_6438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [CGCGTCCGTATCCGCCTAACCGTGCAACATCGACGCTCGGCCGTTGTTTCAATTTCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGTCGCCGACGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGATCTGTCGCAAGAAACCATCTCCCGGTGACGCGGCATG] [+] EMBL AGAA13322 [CGCGTCCGTATCCGCCTAACCGTGCAACATCGACGCTCGGCCGTTGTTTCAATTTCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGACGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCGCTCGGCCCGCAGTCGCCGACGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAGCTTCAACGATACGTTCGTGCATGTGACGATCTGTCGCAAGAAACCATCTCCCGGTGACGCGGCATG] consensusID : consensus_6438#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [GTCACACTTCGGTCTAATCGTTGTTAGAAAAGCAGCCAATCGAATCGAAGAACTCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGAGTGTGGGGTAAATGTAGTGTGTATTTTTGTTTTAAATTCGCTCGAAAATACACGTAATCGATAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AF002676 [GTCACACTTCGGTCTAATCGTTGTTAGAAAAGCAGCCAATCGAATCGAAGAACTCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTTTTGTTGGTGCAAGAGTGTGGGGTAAATGTAGTGTGTATTTTTGTTTTAAATTCGCTCGAAAATACACGTAATCGATAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6438#0 CCGCCCACGCGTCCGCCCACGCGTCCGACCTAACCGT-GCAACATCGACGCTCGCGCG-- 57 consensus_6438#1 -------------CGCGTCCGTATCCG-CCTAACCGT-GCAACATCGACGCTCGGCCG-- 43 consensus_6438#2 ----------------GTCACACTTCGGTCTAATCGTTGTTAGAAAAGCAGCCAATCGAA 44 * ** **** *** * * * * * ** consensus_6438#0 TTG------TTTCAATATCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGA 111 consensus_6438#1 TTG------TTTCAATTTCAGGCGTAAAAACACGTCCCCGCTCGTTAGCAAGCTGCCCGA 97 consensus_6438#2 TCGAAGAACTCCTAATCTATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGA 104 * * * *** * * * *** * * ***** * *** consensus_6438#0 CGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCG 171 consensus_6438#1 CGCTTAGCCATGGCTCCGTCTCGCAAGAATAAGGTCGCGAAGGAAGAGGTGCAGGTGTCG 157 consensus_6438#2 CTCTTAAGGTTCGGTT--TTTTGTTGGTGCAAGAGTGTGGGGTAAATGTAGT--GTGTAT 160 * **** * * * * * * * *** * * * ** * * **** consensus_6438#0 CTCGGCCCGCAGGTCCG-CGACGGTGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAG 230 consensus_6438#1 CTCGGCCCGCAG-TCGC-CGACG-TGAGGTCGTGTTCGGCGTGGCACACATCTACGCCAG 214 consensus_6438#2 TTTTGTTTTAAATTCGCTCGAAAATACA--CGTAATCGATAACAGAAAAAAAAAAAAAAA 218 * * * ** *** * *** *** * * * * * consensus_6438#0 CTTCAACGATACGTTCGTGCATGTGACGGATCTGTCCGGCAAGGAAACCATCTCCCGGGT 290 consensus_6438#1 CTTCAACGATACGTTCGTGCATGTGACG-ATCTGTC--GCAAG-AAACCATCTCCCGG-T 269 consensus_6438#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------- 270 ** * * * * * ** *** * consensus_6438#0 GACGGGCGGCATGAAGGTGAAGGCCGATCGTGACGAAGCGTCGCCGTACGCCGCTATGCT 350 consensus_6438#1 GAC--GCGGCATG----------------------------------------------- 280 consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 GGCCGCCCAGGATGTGGCCGAGAAGTGCAAATCGCTCGGCATCACCGCACTGCACATCAA 410 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 GCTGCGCGCTACCGGTGGTAACCGCACCAAGACGCCCGGCCCGGGTGCCCAGTCGGCGCT 470 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 CCGTGCGCTCGCCCGTTCGTCGATGAAGATCAGCCGCATCGAGGATGTGACCCCGATCCC 530 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 GTCGGATTCTACCCGCCGCAAGGGTGGTCGTCGTGGACGTCGTTTGTAAGCGCGCCAACC 590 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 TGTTTGCAACCATCTCTTACGAAACAACTCGAGCTGCGATTCTAACGTGCGCGCGTAACG 650 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 ACTGCCTTTCAAGACAAATCAGTGTGTGTGTGGAATGAGCTGACCAGCGTGAAATCCGGC 710 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 AATGCACCTCCTCCCAAACGCTACCATCCATCGCAGCGGATTTTGCAGCGGGTCACCACA 770 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 TTCGGTCATAATCGTTGTTAGAAAAAAAGCAGCCAATCGAATCGAAGAACATCCTAATCT 830 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 ATGAACGACGAACGAAAGAGAGAGAGAGAGCAAAGAACACGACTCTTAAGGTTCGGTTTT 890 consensus_6438#1 ------------------------------------------------------------ consensus_6438#2 ------------------------------------------------------------ consensus_6438#0 TTGTTGGTGCAAGGTTTCAGCTT 913 consensus_6438#1 ----------------------- consensus_6438#2 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||