These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1014 fasta sequence [GGGCAGAATCCCCCGACGGTAGCATCGGCAGCTCCTACCTGGTTCCGGATTGACATGGAAACGATCATCGATGCGACCAAGTGCGGCAACTTGTGCCCGATTCATTAACCATAGTTGCAATACCCAACTGTTACGCTAAAGTGATTACGATACGAGTCGGAGAAAAAGATCGTACATACTACTCGAAGCAACCGATCGGGGTGAACTGAGGAGATTACGTACGATACAAGTNCCCTGCTCGAGTGACGAAAAGATCCCTATGCTATGTGCGGTGCTGCCCGGTNTGCCTGCTGGTACACTCAACTAAAACCACACACGCTTCAAACTGATCNGTTGCTGCAACTGCCCCGAGCATAGTTGTCTNTGGCCCTGGGNCATCNGGCGCAGTGCAGCAGCAGCCAGTAAGCTGGCGCAATAACTNGGACCCATATTGGCCCCACAATANCTATAGTCACAATATTNTACNGTCAGACTTAGTAATTCAATNCTAACACTAAATAATATAAAAAAACCGTAAAAGACCAATAANACAAATGCCGCCAAANATANAGGCTACAAAAACAAAGGAANTACNAACACCACAACAACCCTAGGGTACNCCACCCGGCNCAATACTAGTCNAGAACNAAGCACACGCGAACAACNCGCACACCTNTGGGACAATNACCTANAGGCAAANCACTACACAAGGNNNNNAACACGGCATNAAGAACANCAGGGATTANNGCCCCCAANGACACCCGNGCCCNGGCCGCCANAGCGACCCCAAGCACCAAGATNCNAGTNCCNANAGAGCTNCNGCCCACTACCANNACAACCCGCCAAAACGCATNCNACACACACACCACCAANCGCACCNCACCCCCNCCACACNCCACATCTAGGCACCGCCACCCCCGGNCTCACCCCTGGGNTCANCCGGCCCGCACGTCTCTCCCGGANCCCAAANTAACNCGCNTTAAANCAACCACCCACACNNCCCGACCCNCCCACNCGCCANCCCCGCCCCCANCC] [+] EMBL AL694897 [GGGCAGAATCCCCCGACGGTAGCATCGGCAGCTCCTACCTGGTTCCGGATTGACATGGAAACGATCATCGATGCGACCAAGTGCGGCAACTTGTGCCCGATTCATTAACCATAGTTGCAATACCCAACTGTTACGCTAAAGTGATTACGATACGAGTCGGAGAAAAAGATCGTACATACTACTCGAAGCAACCGATCGGGGTGAACTGAGGAGATTACGTACGATACAAGTNCCCTGCTCGAGTGACGAAAAGATCCCTATGCTATGTGCGGTGCTGCCCGGTNTGCCTGCTGGTACACTCAACTAAAACCACACACGCTTCAAACTGATCNGTTGCTGCAACTGCCCCGAGCATAGTTGTCTNTGGCCCTGGGNCATCNGGCGCAGTGCAGCAGCAGCCAGTAAGCTGGCGCAATAACTNGGACCCATATTGGCCCCACAATANCTATAGTCACAATATTNTACNGTCAGACTTAGTAATTCAATNCTAACACTAAATAATATAAAAAAACCGTAAAAGACCAATAANACAAATGCCGCCAAANATANAGGCTACAAAAACAAAGGAANTACNAACACCACAACAACCCTAGGGTACNCCACCCGGCNCAATACTAGTCNAGAACNAAGCACACGCGAACAACNCGCACACCTNTGGGACAATNACCTANAGGCAAANCACTACACAAGGNNNNNAACACGGCATNAAGAACANCAGGGATTANNGCCCCCAANGACACCCGNGCCCNGGCCGCCANAGCGACCCCAAGCACCAAGATNCNAGTNCCNANAGAGCTNCNGCCCACTACCANNACAACCCGCCAAAACGCATNCNACACACACACCACCAANCGCACCNCACCCCCNCCACACNCCACATCTAGGCACCGCCACCCCCGGNCTCACCCCTGGGNTCANCCGGCCCGCACGTCTCTCCCGGANCCCAAANTAACNCGCNTTAAANCAACCACCCACACNNCCCGACCCNCCCACNCGCCANCCCCGCCCCCANCC] consensusID : consensus_6442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [TGAAGGGTACGGTGGCCGCGAACCACCTCACCAACCTCGAGCTGGCCAAGGCGGTTGCCAAGATGCAGGGCATCTCGCGCGAGGCCCGCTCGAACCAGCGCCGGCTGCTGAACGCGTTCGGGGCGAGCACCGAGTCGGAGCTGCTCAAGTTTAACCAGCTCAAGTTCCGCAAGAAGCAGCTCAAGTTTGCGAAATCGGCCATCCACGACTGGGGCCTGTTCGCGATGGAACCGATCGCGGCGGACGAGATGGTGATCGAGTACGTCGGGCAGATGGTGCGACCGTCGGTGGCGGATCTGCGCGAAACCAAGTACGAAGCGATCGGCATCGGCAGCTCCTACCTGTTCCGGATCGACATGGAAACGATCATCGATGCGACCAAGTGCGGCAACTTGGCCCGATTCATTAACCATAGTTGCAATCCCAACTGTTACGCTAAAGTGATTACGATCGAGTCGGAGAAAAAGATCGTCATCTACTCGAAGCAACCGATCGGGGTGAACGAGGAGATTACGTACGACTACAAGTTCCCGCTCGAGGACGAAAAGATCCCTTGCTTGTGCGGTGCGCCCGGTTGCCGCGGTACACTCAACTAAACCCACACACGCTTCAAACGATCGTGCGCAACGCCGGATGTGTCTGCCCCGGCATCGGGAGGAGAGAGCAGTAGCGGCAATACTGCCCATTGCCCAATTTATGTACATTTTTGTAGCTGTATATATACATATATTTACGTTTTCATTAGGCGCAAATGCTCNACAGATCAAAACACTGGTCCCGTATCTGTGCGGNGGAACCGTCTGCATCTGCACATTAGTTTACCGCT] [+] EMBL BX623372 [TGAAGGGTACGGTGGCCGCGAACCACCTCACCAACCTCGAGCTGGCCAAGGCGGTTGCCAAGATGCAGGGCATCTCGCGCGAGGCCCGCTCGAACCAGCGCCGGCTGCTGAACGCGTTCGGGGCGAGCACCGAGTCGGAGCTGCTCAAGTTTAACCAGCTCAAGTTCCGCAAGAAGCAGCTCAAGTTTGCGAAATCGGCCATCCACGACTGGGGCCTGTTCGCGATGGAACCGATCGCGGCGGACGAGATGGTGATCGAGTACGTCGGGCAGATGGTGCGACCGTCGGTGGCGGATCTGCGCGAAACCAAGTACGAAGCGATCGGCATCGGCAGCTCCTACCTGTTCCGGATCGACATGGAAACGATCATCGATGCGACCAAGTGCGGCAACTTGGCCCGATTCATTAACCATAGTTGCAATCCCAACTGTTACGCTAAAGTGATTACGATCGAGTCGGAGAAAAAGATCGTCATCTACTCGAAGCAACCGATCGGGGTGAACGAGGAGATTACGTACGACTACAAGTTCCCGCTCGAGGACGAAAAGATCCCTTGCTTGTGCGGTGCGCCCGGTTGCCGCGGTACACTCAACTAAACCCACACACGCTTCAAACGATCGTGCGCAACGCCGGATGTGTCTGCCCCGGCATCGGGAGGAGAGAGCAGTAGCGGCAATACTGCCCATTGCCCAATTTATGTACATTTTTGTAGCTGTATATATACATATATTTACGTTTTCATTAGGCGCAAATGCTCNACAGATCAAAACACTGGTCCCGTATCTGTGCGGNGGAACCGTCTGCATCTGCACATTAGTTTACCGCT] consensusID : consensus_6442#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 754 fasta sequence [GAATCGCCCGAGGTTCACTGGCCGATTCATTAACCATAGTTGCAATCCCAACTGTTACGCTAAAGTGATTACGATCGAGTCGGAGAAAAAGATCGTCATCTACTCGAAGCAACCGATCGGGGTGAACGAGGAGATTACGTACGACTACAAGTTCCCGCTCGAGGACGAAAAGATCCCTTGCTTGTGCGGTGCGCCCGGTTGCCGCGGTACACTCAACTAAACCCACACACGCTTCAAACGATCGTGCGCAACGCCGGATGTGTCTGCCCCGGCATCGGGAGGAGAGAGCAGTAGCGGCAATACTGCCCATTGCCCAATTTATGTACATTTTTGTAGCTGTATATATACATATATTTACGTTTTCATTAGGCGCAAATGCTCAACAGATCAAAACACTGGTCCCGTATCTGTGCGGCGGAACCGTCTGCATCTGCACATTAGTTTACCGCTACACAGCTAGCCAGCCCGCCAGCCAGCCAGTCAGTCATCAGTCCCTCACACCCACTCACACAAGAGACAGAACATTGAGACCGTTATTGTTCGCTTTCCGTCATACGTTAGACACACTCGGGTGTCGGTCGTGTCGTAATGCAAGAACACACTACAAAAAATACCAACAGGAAAGTGAATGTGAACTCTTTTTTTGTAGCTAGTTTTACCTGTTGCGTTCCGTTCTATTCCCCTCCCTCCTCGTTGAATGTGTTTTTTACAACGTTTCCTAGTTTGTTTTCGAAATCATATGTGCATTCAGGAA] [+] EMBL AL930939 [GAATCGCCCGAGGTTCACTGGCCGATTCATTAACCATAGTTGCAATCCCAACTGTTACGCTAAAGTGATTACGATCGAGTCGGAGAAAAAGATCGTCATCTACTCGAAGCAACCGATCGGGGTGAACGAGGAGATTACGTACGACTACAAGTTCCCGCTCGAGGACGAAAAGATCCCTTGCTTGTGCGGTGCGCCCGGTTGCCGCGGTACACTCAACTAAACCCACACACGCTTCAAACGATCGTGCGCAACGCCGGATGTGTCTGCCCCGGCATCGGGAGGAGAGAGCAGTAGCGGCAATACTGCCCATTGCCCAATTTATGTACATTTTTGTAGCTGTATATATACATATATTTACGTTTTCATTAGGCGCAAATGCTCAACAGATCAAAACACTGGTCCCGTATCTGTGCGGCGGAACCGTCTGCATCTGCACATTAGTTTACCGCTACACAGCTAGCCAGCCCGCCAGCCAGCCAGTCAGTCATCAGTCCCTCACACCCACTCACACAAGAGACAGAACATTGAGACCGTTATTGTTCGCTT ] [-] EMBL BX609761 [ ATACATATATTTACGTTTTCATTAGGCGCAAATGCTCAACAGATCAAAACACTGGTCCCGTATCTGTGCGGCGGAACCGTCTGCATCTGCACATTAGTTTACCGCTACACAGCTAGCCAGCCCGCCAGCCAGCCAGTCAGTCATCAGTCCCTCACACCCACTCACACAAGAGACAGAACATTGAGACCGTT TTGTTCGCTTTCCGTCATACGTTAGACACACTCGGGTGTCGGTCGTGTCGTAATGCAAGAACACACTACAAAAAATACCAACAGGAAAGTGAATGTGAACTCTTTTTTTGTAGCTAGTTTTACCTGTTGCGTTCCGTTCTATTCCCCTCCCTCCTCGTTGAATGTGTTTTTTACAACGTTTCCTAGTTTGTTTTCGAAATCATATGTGCA ] [-] EMBL BX609834 [ CACTACAAAAAATACCAACAGGAAAGTGAATGTGAACTCTTTTTTTGTAGCTAGTTTTACCTGTTGCGTTCCGTTCTATTCCCCTCCCTCCTCGTTGAATGTGTTTTTTACAACGTTTCCTAGTTTGTTTTCGAAATCATATGTGCCTTCAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6442#1 TGAAGGGTACGGTGGCCGCGAACCACCTCACCAACCTCGAGCTGGCCAAGGCGGTTGCCA 60 consensus_6442#2 ------------------------------------------------------------ consensus_6442#0 ------------------------------------------------------------ consensus_6442#1 AGATGCAGGGCATCTCGCGCGAGGCCCGCTCGAACCAGCGCCGGCTGCTGAACGCGTTCG 120 consensus_6442#2 ------------------------------------------------------------ consensus_6442#0 ------------------------------------------------------------ consensus_6442#1 GGGCGAGCACCGAGTCGGAGCTGCTCAAGTTTAACCAGCTCAAGTTCCGCAAGAAGCAGC 180 consensus_6442#2 ------------------------------------------------------------ consensus_6442#0 ------------------------------------------------------------ consensus_6442#1 TCAAGTTTGCGAAATCGGCCATCCACGACTGGGGCCTGTTCGCGATGGAACCGATCGCGG 240 consensus_6442#2 ------------------------------------------------------------ consensus_6442#0 ------------------------------------------------------------ consensus_6442#1 CGGACGAGATGGTGATCGAGTACGTCGGGCAGATGGTGCGACCGTCGGTGGCGGATCTGC 300 consensus_6442#2 ------------------------------------------------------------ consensus_6442#0 ------------------------------------------------------------ consensus_6442#1 GCGAAACCAAGTACGAAGCGATCGGCATCGGCAGCTCCTACCTG-TTCCGGATCGACATG 359 consensus_6442#2 ------------------------------------------------------------ consensus_6442#0 ---GGGCAGAATCCCCCGACGGTAGCATCGGCAGCTCCTACCTGGTTCCGGATTGACATG 57 consensus_6442#1 GAAACGATCATCGATGCGACCAAGTGCGGCAACTTGG-CCCGATTCATTAACCATAGTTG 418 consensus_6442#2 ------------GAATCGCCCGAG---GTTCACTGG---CCGATTCATTAACCATAGTTG 42 consensus_6442#0 GAAACGATCATCGATGCGACCAAGTGCGGCAACTTGTGCCCGATTCATTAACCATAGTTG 117 ** ** ** ** * *** * ********************* consensus_6442#1 CAAT-CCCAACTGTTACGCTAAAGTGATTACGAT-CGAGTCGGAGAAAAAGATCGT-CAT 475 consensus_6442#2 CAAT-CCCAACTGTTACGCTAAAGTGATTACGAT-CGAGTCGGAGAAAAAGATCGT-CAT 99 consensus_6442#0 CAATACCCAACTGTTACGCTAAAGTGATTACGATACGAGTCGGAGAAAAAGATCGTACAT 177 **** ***************************** ********************* *** consensus_6442#1 -CTACTCGAAGCAACCGATCGGGGTGAAC-GAGGAGATTACGTACGACTACAAGTTCCC- 532 consensus_6442#2 -CTACTCGAAGCAACCGATCGGGGTGAAC-GAGGAGATTACGTACGACTACAAGTTCCC- 156 consensus_6442#0 ACTACTCGAAGCAACCGATCGGGGTGAACTGAGGAGATTACGTACGA-TACAAGTNCCCT 236 **************************** ***************** ******* *** consensus_6442#1 GCTCGAG-GACGAAAAGATCCCT-TGCT-TGTGCGGTGC-GCCCGGTTG--CCGC-GGTA 585 consensus_6442#2 GCTCGAG-GACGAAAAGATCCCT-TGCT-TGTGCGGTGC-GCCCGGTTG--CCGC-GGTA 209 consensus_6442#0 GCTCGAGTGACGAAAAGATCCCTATGCTATGTGCGGTGCTGCCCGGTNTGCCTGCTGGTA 296 ******* *************** **** ********** ******* * ** **** consensus_6442#1 CACTCAACTAAACCCACACACGCTTCAAAC-GATCG--TGC-GCAAC-GCC--------G 632 consensus_6442#2 CACTCAACTAAACCCACACACGCTTCAAAC-GATCG--TGC-GCAAC-GCC--------G 256 consensus_6442#0 CACTCAACTAAAACCACACACGCTTCAAACTGATCNGTTGCTGCAACTGCCCCGAGCATA 356 ************ ***************** **** *** ***** *** consensus_6442#1 GATGTGTCTGCCCC---GGCATCGGGAGGAGAG-AGCAGTAGC-GGCAATACTGCCCATT 687 consensus_6442#2 GATGTGTCTGCCCC---GGCATCGGGAGGAGAG-AGCAGTAGC-GGCAATACTGCCCATT 311 consensus_6442#0 GTTGTCTNTGGCCCTGGGNCATCNGGCGCAGTGCAGCAGCAGCCAGTAAGCTGGCGCAAT 416 * *** * ** *** * **** ** * ** * ***** *** * ** ** ** * consensus_6442#1 GCCCA--ATTTATGT--ACATTTTTGTAGCTGTATATATA----CATATATTTACGTTT- 738 consensus_6442#2 GCCCA--ATTTATGT--ACATTTTTGTAGCTGTATATATA----CATATATTTACGTTT- 362 consensus_6442#0 AACTNGGACCCATATTGGCCCCACAATANCTATAGTCACAATATTNTACNGTCAGACTTA 476 * * ** * * ** ** ** * * ** * * ** consensus_6442#1 -TCATTAGGCGCAAATGCTCNACAGATCAAAACACTGGTCCCGTATCTGTGCGGNGGAAC 797 consensus_6442#2 -TCATTAGGCGCAAATGCTCAACAGATCAAAACACTGGTCCCGTATCTGTGCGGCGGAAC 421 consensus_6442#0 GTAATTCAATNCTAACACTAAATAATATAAAAAAACCGTAAAAGACCAATAANACAAATG 536 * *** * ** ** * * **** * ** * * * * consensus_6442#1 CGTCTGCATCTGCACATTA------------GTTTACCGCT------------------- 826 consensus_6442#2 CGTCTGCATCTGCACATTA------------GTTTACCGCTACACAGCTAGCCAGCCCGC 469 consensus_6442#0 CCGCCAAANATANAGGCTACAAAAACAAAGGAANTACNAACACCACAACAACCCTAGGGT 596 * * * * * ** *** consensus_6442#1 ------------------------------------------------------------ consensus_6442#2 CAGCCAGCCAGTCAGTCATCAGTCCCTCACA---CCCACTCACACAAGAGACAGAACATT 526 consensus_6442#0 ACNCCACCCGGCNCAATACTAGTCNAGAACNAAGCACACGCGAACAACNCGCACACCTNT 656 consensus_6442#1 ------------------------------------------------------------ consensus_6442#2 GAGACCGTTAT-TGTTCGCTTTCCGTCATACGTTAGACACACTCGGGTGTCGGTCGTGTC 585 consensus_6442#0 GGGACAATNACCTANAGGCAAANCACTACACAAGGNNNNNAACACGGCATNAAGAACANC 716 consensus_6442#1 ------------------------------------------------------------ consensus_6442#2 GTAATGCAAGAACACACTACAAAAAATACCAACAGGAAAGTGAATGTGAACTCTTTTTTT 645 consensus_6442#0 ---AGGGATTANNGCCCCCAANGACACCCGNGCCCNGGCCGCCANAGCGACCCCAAGCAC 773 consensus_6442#1 ------------------------------------------------------------ consensus_6442#2 GTAGCTAGTTTTACCTGTTGCGTTCCGTTCTATTCCCCTCCCTCCTCGTTGAA-TGTGTT 704 consensus_6442#0 CAAGATNCNAGTNCCNANAGAGCTNCNGCCCACTACCANNACAACCCGCCAAAACGCATN 833 consensus_6442#1 ------------------------------------------------------------ consensus_6442#2 TTTTACA-ACGTTTCCTAGTTTGTTTT--CGAAATCATATGT-GCATTCAGGAA------ 754 consensus_6442#0 CNACACACACACCACCAANCGCACCNCACCCCCNCCACACNCCACATCTAGGCACCGCCA 893 consensus_6442#1 ------------------------------------------------------------ consensus_6442#2 ------------------------------------------------------------ consensus_6442#0 CCCCCGGNCTCACCCCTGGGNTCANCCGGCCCGCACGTCTCTCCCGGANCCCAAANTAAC 953 consensus_6442#1 ------------------------------------------------------------ consensus_6442#2 ------------------------------------------------------------ consensus_6442#0 NCGCNTTAAANCAACCACCCACACNNCCCGACCCNCCCACNCGCCANCCCCGCCCCCANC 1013 consensus_6442#1 - consensus_6442#2 - consensus_6442#0 C 1014 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||